Wall clock time and date at job start Tue Mar 31 2020 05:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46897 * 110.99926 * 2 1 4 4 C 1.52998 * 109.47368 * 66.04438 * 3 2 1 5 5 H 1.08997 * 109.47251 * 305.00150 * 4 3 2 6 6 O 1.42904 * 109.47151 * 65.00076 * 4 3 2 7 7 C 1.53001 * 109.47260 * 184.99748 * 4 3 2 8 8 N 1.46898 * 109.47328 * 174.00324 * 7 4 3 9 9 C 1.46895 * 111.00315 * 201.31008 * 8 7 4 10 10 C 1.50698 * 109.47356 * 164.14285 * 9 8 7 11 11 H 1.08006 * 120.00004 * 3.56227 * 10 9 8 12 12 C 1.37881 * 120.00294 * 183.56197 * 10 9 8 13 13 N 1.31514 * 119.99892 * 180.02562 * 12 10 9 14 14 Si 1.86798 * 119.99730 * 359.97438 * 12 10 9 15 15 H 1.48506 * 109.46836 * 90.00012 * 14 12 10 16 16 H 1.48499 * 109.47301 * 209.99686 * 14 12 10 17 17 H 1.48496 * 109.47525 * 330.00411 * 14 12 10 18 18 C 1.46900 * 110.99709 * 77.35050 * 8 7 4 19 19 C 1.53003 * 109.46937 * 57.74750 * 18 8 7 20 20 C 1.53004 * 117.49795 * 242.80740 * 19 18 8 21 21 C 1.53004 * 117.50073 * 174.15222 * 19 18 8 22 22 C 1.46897 * 111.00146 * 236.04362 * 2 1 3 23 23 C 1.53003 * 117.49738 * 235.33183 * 22 2 1 24 24 C 1.53001 * 60.00031 * 107.49097 * 23 22 2 25 25 H 1.09004 * 109.47250 * 183.95871 * 1 2 3 26 26 H 1.09000 * 109.47084 * 303.95547 * 1 2 3 27 27 H 1.08993 * 109.47021 * 63.95760 * 1 2 3 28 28 H 1.09008 * 109.47012 * 186.04451 * 3 2 1 29 29 H 1.08998 * 109.47010 * 306.04532 * 3 2 1 30 30 H 0.96701 * 114.00165 * 54.34989 * 6 4 3 31 31 H 1.08999 * 109.47446 * 294.00821 * 7 4 3 32 32 H 1.08999 * 109.46815 * 54.00913 * 7 4 3 33 33 H 1.09005 * 109.47000 * 284.14304 * 9 8 7 34 34 H 1.08994 * 109.47479 * 44.13832 * 9 8 7 35 35 H 0.96996 * 119.99314 * 180.02562 * 13 12 10 36 36 H 1.08999 * 109.47358 * 177.74087 * 18 8 7 37 37 H 1.08997 * 109.47901 * 297.74473 * 18 8 7 38 38 H 1.09001 * 115.55116 * 28.47497 * 19 18 8 39 39 H 1.09001 * 117.49617 * 359.97438 * 20 19 18 40 40 H 1.08999 * 117.49798 * 145.01550 * 20 19 18 41 41 H 1.08999 * 117.49463 * 214.97901 * 21 19 18 42 42 H 1.09000 * 117.49615 * 359.97438 * 21 19 18 43 43 H 1.08997 * 115.56593 * 89.64352 * 22 2 1 44 44 H 1.08998 * 117.49610 * 214.97701 * 23 22 2 45 45 H 1.08996 * 117.50354 * 0.02562 * 23 22 2 46 46 H 1.09006 * 117.49777 * 252.51219 * 24 23 22 47 47 H 1.08998 * 117.52435 * 107.47820 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0575 1.3182 5 1 0.5532 2.0058 1.4691 6 8 2.2955 1.3976 2.3979 7 6 2.0700 3.5224 1.2688 8 7 1.5943 4.2169 2.4728 9 6 1.5356 5.6684 2.2548 10 6 0.6966 6.3047 3.3328 11 1 0.2991 5.7006 4.1350 12 6 0.4363 7.6582 3.2950 13 7 -0.2955 8.2136 4.2360 14 14 1.1244 8.7032 1.9079 15 1 0.1530 8.7372 0.7851 16 1 1.3613 10.0844 2.3993 17 1 2.4055 8.1189 1.4365 18 6 2.4337 3.8923 3.6338 19 6 3.8857 4.2709 3.3352 20 6 4.9192 3.1428 3.3105 21 6 4.8991 4.1375 4.4737 22 6 1.9955 -0.7660 -1.1375 23 6 2.9694 -1.9057 -0.8316 24 6 1.5410 -2.2199 -1.2811 25 1 -0.3634 -1.0252 0.0709 26 1 -0.3633 0.5740 0.8524 27 1 -0.3633 0.4512 -0.9233 28 1 3.0798 1.3444 -0.1082 29 1 1.5611 1.9273 -0.8309 30 1 3.2537 1.3288 2.2870 31 1 3.1578 3.5748 1.2250 32 1 1.6473 3.9985 0.3841 33 1 2.5438 6.0817 2.2875 34 1 1.0911 5.8718 1.2807 35 1 -0.4789 9.1657 4.2092 36 1 2.0841 4.4504 4.5024 37 1 2.3718 2.8237 3.8397 38 1 4.0222 5.0939 2.6337 39 1 4.5646 2.1311 3.5074 40 1 5.7357 3.2239 2.5929 41 1 5.7025 4.8727 4.5210 42 1 4.5313 3.7805 5.4356 43 1 2.1583 -0.1970 -2.0528 44 1 3.7728 -2.0864 -1.5456 45 1 3.2191 -2.0874 0.2137 46 1 0.8513 -2.6080 -0.5315 47 1 1.4044 -2.6071 -2.2908 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336785670.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:55 Heat of formation + Delta-G solvation = 19.676968 kcal Electronic energy + Delta-G solvation = -23337.258106 eV Core-core repulsion = 20136.277248 eV Total energy + Delta-G solvation = -3200.980858 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.22246 -38.25329 -36.55483 -34.95128 -34.02081 -32.37430 -29.96049 -27.88701 -26.96362 -25.39587 -23.33267 -22.44956 -22.18192 -21.49475 -20.95844 -20.49337 -19.14776 -16.94093 -16.61902 -16.10634 -15.88948 -15.36101 -15.04638 -14.71982 -14.44619 -14.24867 -13.93521 -13.54472 -13.18086 -13.14143 -12.72588 -12.37776 -12.02098 -11.93292 -11.69840 -11.50118 -11.42588 -11.31992 -11.08104 -10.96071 -10.86133 -10.68053 -10.59058 -10.44072 -10.33421 -10.19932 -9.86640 -9.53788 -9.32729 -9.01135 -8.53256 -8.37365 -7.25129 -6.01580 -3.97395 3.28171 3.35955 3.36903 3.55198 3.60769 4.14937 4.43772 4.62203 4.68518 4.73051 4.79669 4.98623 5.06000 5.10933 5.20039 5.25551 5.31065 5.33905 5.42119 5.44119 5.50875 5.55956 5.59919 5.61381 5.75648 5.77964 5.82281 5.93854 5.97153 5.99373 6.05896 6.21419 6.32652 6.38133 6.44691 6.50041 6.89047 6.91097 6.93349 7.00395 7.09459 7.65859 7.94834 8.00689 8.12855 8.71209 9.09120 9.60624 11.11952 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018573 B = 0.004250 C = 0.003761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.243244 B = 6586.038274 C = 7443.438753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.504 5.504 3 C 0.026 3.974 4 C 0.121 3.879 5 H 0.105 0.895 6 O -0.541 6.541 7 C 0.020 3.980 8 N -0.513 5.513 9 C 0.158 3.842 10 C -0.502 4.502 11 H 0.080 0.920 12 C 0.067 3.933 13 N -0.901 5.901 14 Si 0.873 3.127 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.270 1.270 18 C 0.084 3.916 19 C -0.172 4.172 20 C -0.190 4.190 21 C -0.177 4.177 22 C 0.003 3.997 23 C -0.164 4.164 24 C -0.176 4.176 25 H 0.066 0.934 26 H 0.077 0.923 27 H 0.024 0.976 28 H 0.075 0.925 29 H 0.042 0.958 30 H 0.361 0.639 31 H 0.037 0.963 32 H 0.067 0.933 33 H -0.008 1.008 34 H 0.018 0.982 35 H 0.262 0.738 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.098 0.902 39 H 0.094 0.906 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.093 0.907 43 H 0.086 0.914 44 H 0.091 0.909 45 H 0.101 0.899 46 H 0.098 0.902 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.222 -17.340 -10.231 21.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.227 5.227 3 C -0.103 4.103 4 C 0.061 3.939 5 H 0.122 0.878 6 O -0.345 6.345 7 C -0.110 4.110 8 N -0.234 5.234 9 C 0.032 3.968 10 C -0.540 4.540 11 H 0.098 0.902 12 C -0.134 4.134 13 N -0.541 5.541 14 Si 0.701 3.299 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.195 1.195 18 C -0.044 4.044 19 C -0.192 4.192 20 C -0.227 4.227 21 C -0.214 4.214 22 C -0.106 4.106 23 C -0.201 4.201 24 C -0.213 4.213 25 H 0.085 0.915 26 H 0.096 0.904 27 H 0.043 0.957 28 H 0.093 0.907 29 H 0.060 0.940 30 H 0.208 0.792 31 H 0.055 0.945 32 H 0.086 0.914 33 H 0.010 0.990 34 H 0.036 0.964 35 H 0.072 0.928 36 H 0.100 0.900 37 H 0.107 0.893 38 H 0.116 0.884 39 H 0.112 0.888 40 H 0.100 0.900 41 H 0.103 0.897 42 H 0.111 0.889 43 H 0.104 0.896 44 H 0.109 0.891 45 H 0.119 0.881 46 H 0.117 0.883 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 7.177 -17.575 -9.418 21.192 hybrid contribution 1.496 1.661 -2.051 3.034 sum 8.673 -15.914 -11.469 21.448 Atomic orbital electron populations 1.22443 0.86985 1.02252 1.00872 1.61715 1.07903 1.13337 1.39788 1.22884 1.00393 0.88319 0.98656 1.21977 0.98389 0.89226 0.84321 0.87753 1.86626 1.23406 1.80282 1.44228 1.22769 0.98167 0.94975 0.95106 1.62083 1.49210 1.10128 1.02026 1.20259 0.95543 0.83661 0.97354 1.21027 1.30581 0.92990 1.09393 0.90159 1.24889 0.94984 0.97740 0.95767 1.69895 1.38903 1.11681 1.33606 0.86898 0.79900 0.80059 0.83049 1.20292 1.21275 1.19490 1.22026 0.85868 1.01709 0.94791 1.23175 0.94557 0.99801 1.01676 1.23050 1.02267 0.95420 1.01992 1.22818 1.02252 1.02318 0.94058 1.22441 1.04613 0.89745 0.93807 1.23055 0.92523 1.01826 1.02734 1.23037 0.98646 0.97216 1.02419 0.91488 0.90396 0.95739 0.90653 0.94001 0.79204 0.94510 0.91408 0.99044 0.96371 0.92767 0.89987 0.89289 0.88360 0.88805 0.89977 0.89659 0.88880 0.89646 0.89063 0.88052 0.88310 0.88936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.19 60.06 0.55 0.79 16 2 N -0.50 -5.70 4.86 -234.89 -1.14 -6.84 16 3 C 0.03 0.30 4.51 -3.83 -0.02 0.28 16 4 C 0.12 1.69 3.16 -26.73 -0.08 1.60 16 5 H 0.10 1.64 6.26 -51.93 -0.33 1.32 16 6 O -0.54 -7.70 10.54 -35.23 -0.37 -8.07 16 7 C 0.02 0.32 4.69 -3.82 -0.02 0.30 16 8 N -0.51 -10.43 4.58 -236.08 -1.08 -11.51 16 9 C 0.16 3.78 3.66 -4.98 -0.02 3.76 16 10 C -0.50 -14.26 9.12 -34.44 -0.31 -14.58 16 11 H 0.08 2.51 7.66 -52.48 -0.40 2.11 16 12 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 13 N -0.90 -27.80 13.96 55.43 0.77 -27.02 16 14 Si 0.87 21.59 27.40 -169.99 -4.66 16.93 16 15 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 16 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 17 H -0.27 -6.43 6.65 56.52 0.38 -6.05 16 18 C 0.08 1.59 5.21 -3.82 -0.02 1.57 16 19 C -0.17 -2.85 3.85 -90.61 -0.35 -3.20 16 20 C -0.19 -2.46 9.62 -26.69 -0.26 -2.72 16 21 C -0.18 -2.56 10.25 -26.69 -0.27 -2.83 16 22 C 0.00 0.03 5.27 -67.71 -0.36 -0.33 16 23 C -0.16 -1.40 10.46 -26.73 -0.28 -1.68 16 24 C -0.18 -1.46 9.77 -26.73 -0.26 -1.72 16 25 H 0.07 0.66 6.90 -51.93 -0.36 0.30 16 26 H 0.08 0.93 6.21 -51.93 -0.32 0.61 16 27 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.08 0.81 8.08 -51.92 -0.42 0.39 16 29 H 0.04 0.48 8.12 -51.93 -0.42 0.06 16 30 H 0.36 4.28 7.10 45.56 0.32 4.61 16 31 H 0.04 0.56 6.32 -51.93 -0.33 0.23 16 32 H 0.07 1.09 7.62 -51.93 -0.40 0.70 16 33 H -0.01 -0.19 5.38 -51.93 -0.28 -0.47 16 34 H 0.02 0.44 6.90 -51.93 -0.36 0.08 16 35 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 36 H 0.08 1.80 7.08 -51.93 -0.37 1.44 16 37 H 0.09 1.58 5.37 -51.93 -0.28 1.30 16 38 H 0.10 1.82 6.34 -51.93 -0.33 1.49 16 39 H 0.09 1.11 6.58 -51.93 -0.34 0.76 16 40 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 41 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 43 H 0.09 0.80 8.08 -51.93 -0.42 0.38 16 44 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 45 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 46 H 0.10 0.85 7.27 -51.93 -0.38 0.48 16 47 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 359.02 15.07 5.41 5.41 Total: -1.00 -30.61 359.02 -10.38 -40.99 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -7.52 Total: 7.00 kcal Atomic # 6 Polarization: -15.09 SS G_CDS: -1.79 Total: -16.89 kcal Atomic # 7 Polarization: -43.93 SS G_CDS: -1.45 Total: -45.37 kcal Atomic # 8 Polarization: -7.70 SS G_CDS: -0.37 Total: -8.07 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.66 Total: 16.93 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.61 -10.38 -40.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336785670.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.668 kcal (2) G-P(sol) polarization free energy of solvation -30.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds