Wall clock time and date at job start Tue Mar 31 2020 05:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46896 * 111.00397 * 2 1 4 4 C 1.52993 * 109.47263 * 293.96183 * 3 2 1 5 5 H 1.08997 * 109.47504 * 59.99561 * 4 3 2 6 6 O 1.42903 * 109.47031 * 299.99223 * 4 3 2 7 7 C 1.53004 * 109.47231 * 179.97438 * 4 3 2 8 8 N 1.46492 * 109.47351 * 184.99828 * 7 4 3 9 9 C 1.36944 * 119.99756 * 269.99866 * 8 7 4 10 10 H 1.07997 * 119.99978 * 141.36955 * 9 8 7 11 11 C 1.38807 * 120.00011 * 321.36461 * 9 8 7 12 12 N 1.31619 * 120.00153 * 339.48360 * 11 9 8 13 13 Si 1.86804 * 119.99952 * 159.47795 * 11 9 8 14 14 H 1.48501 * 109.46893 * 0.02562 * 13 11 9 15 15 H 1.48505 * 109.47126 * 120.00169 * 13 11 9 16 16 H 1.48501 * 109.47298 * 240.00397 * 13 11 9 17 17 C 1.46505 * 120.00418 * 89.99907 * 8 7 4 18 18 C 1.55236 * 110.57975 * 240.10351 * 17 8 7 19 19 C 1.54886 * 102.58551 * 203.33512 * 18 17 8 20 20 C 1.54260 * 104.31413 * 37.93396 * 19 18 17 21 21 C 1.53874 * 106.59865 * 336.32517 * 20 19 18 22 22 C 1.46899 * 111.00042 * 123.96114 * 2 1 3 23 23 C 1.53006 * 117.50061 * 124.66317 * 22 2 1 24 24 C 1.52998 * 59.99875 * 252.51096 * 23 22 2 25 25 H 1.08994 * 109.47161 * 59.99149 * 1 2 3 26 26 H 1.08994 * 109.47211 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46713 * 299.99867 * 1 2 3 28 28 H 1.08997 * 109.47219 * 173.95570 * 3 2 1 29 29 H 1.09007 * 109.46708 * 53.95564 * 3 2 1 30 30 H 0.96700 * 114.00427 * 300.00702 * 6 4 3 31 31 H 1.09001 * 109.46808 * 64.99607 * 7 4 3 32 32 H 1.09003 * 109.46717 * 304.99696 * 7 4 3 33 33 H 0.97003 * 120.00150 * 179.97438 * 12 11 9 34 34 H 1.09000 * 110.42657 * 2.68738 * 17 8 7 35 35 H 1.09000 * 110.89345 * 85.04504 * 18 17 8 36 36 H 1.08998 * 110.76868 * 321.56918 * 18 17 8 37 37 H 1.09006 * 110.48980 * 279.18752 * 19 18 17 38 38 H 1.09001 * 110.48407 * 156.68108 * 19 18 17 39 39 H 1.08999 * 110.03409 * 95.60553 * 20 19 18 40 40 H 1.09001 * 110.03358 * 216.99043 * 20 19 18 41 41 H 1.09001 * 110.03588 * 119.28697 * 21 20 19 42 42 H 1.09010 * 110.03180 * 240.66661 * 21 20 19 43 43 H 1.08989 * 115.55025 * 270.37151 * 22 2 1 44 44 H 1.09005 * 117.49635 * 359.97438 * 23 22 2 45 45 H 1.08997 * 117.49598 * 145.01636 * 23 22 2 46 46 H 1.08998 * 117.49698 * 252.50727 * 24 23 22 47 47 H 1.09006 * 117.51974 * 107.47963 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.6315 2.0575 -1.3181 5 1 0.5473 2.0845 -1.4263 6 8 2.2009 1.3288 -2.4076 7 6 2.1794 3.4860 -1.3178 8 7 1.7301 4.1816 -2.5263 9 6 2.4891 4.1352 -3.6652 10 1 2.0108 4.0516 -4.6298 11 6 3.8732 4.1958 -3.5797 12 7 4.4450 4.6915 -2.5028 13 14 4.9244 3.5737 -4.9930 14 1 4.0457 3.0697 -6.0789 15 1 5.7641 4.6836 -5.5113 16 1 5.7991 2.4739 -4.5127 17 6 0.4688 4.9269 -2.5165 18 6 -0.5125 4.3526 -3.5734 19 6 -1.4529 5.5524 -3.8478 20 6 -0.5224 6.7822 -3.8121 21 6 0.6995 6.3845 -2.9656 22 6 1.9955 -0.7661 1.1375 23 6 2.9693 -1.9059 0.8315 24 6 1.5410 -2.2200 1.2810 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 3.0798 1.3443 0.1082 29 1 1.5612 1.9273 0.8310 30 1 3.1652 1.2641 -2.3763 31 1 3.2688 3.4573 -1.2989 32 1 1.8145 4.0149 -0.4373 33 1 5.4123 4.7335 -2.4429 34 1 0.0188 4.9001 -1.5241 35 1 -1.0709 3.5091 -3.1676 36 1 0.0205 4.0645 -4.4794 37 1 -2.2134 5.6267 -3.0704 38 1 -1.9192 5.4551 -4.8282 39 1 -0.2078 7.0420 -4.8228 40 1 -1.0368 7.6264 -3.3529 41 1 1.6071 6.4513 -3.5656 42 1 0.7789 7.0360 -2.0953 43 1 2.1580 -0.1970 2.0527 44 1 3.2190 -2.0876 -0.2139 45 1 3.7729 -2.0866 1.5455 46 1 1.4048 -2.6074 2.2907 47 1 0.8509 -2.6079 0.5316 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336786292.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:57 Heat of formation + Delta-G solvation = -4.903509 kcal Electronic energy + Delta-G solvation = -23826.862437 eV Core-core repulsion = 20624.815690 eV Total energy + Delta-G solvation = -3202.046747 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -38.61127 -37.68328 -36.32521 -33.98014 -33.42296 -31.03634 -29.14661 -27.81375 -26.82799 -26.12773 -24.54844 -22.31693 -22.13504 -20.40101 -20.16651 -19.74977 -19.08683 -16.78338 -16.07571 -15.64170 -15.17848 -15.00620 -14.57949 -14.55271 -14.14881 -13.97802 -13.30637 -13.17508 -12.99012 -12.63898 -12.49752 -12.48328 -11.69784 -11.30029 -11.23263 -11.18575 -11.03489 -10.89648 -10.72022 -10.54326 -10.50153 -10.34523 -10.27027 -10.14811 -10.04629 -9.91767 -9.76534 -9.66361 -9.43486 -8.92021 -8.39117 -8.01949 -6.42058 -5.70045 -3.26826 3.40035 3.49865 3.55326 3.82099 3.95006 4.55209 4.95396 5.00809 5.16330 5.25584 5.35027 5.36105 5.45724 5.45930 5.48853 5.59584 5.63271 5.67509 5.75774 5.83295 5.91864 6.00940 6.12823 6.15492 6.19547 6.22970 6.25559 6.27945 6.39531 6.43105 6.53664 6.56018 6.66441 6.68513 6.85259 6.93891 7.09406 7.19912 7.26970 7.35016 7.43300 7.62369 7.93787 8.60675 8.76193 9.27755 9.89621 10.48138 11.29267 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.014288 B = 0.005734 C = 0.004489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.238081 B = 4881.694212 C = 6235.414635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.502 5.502 3 C 0.027 3.973 4 C 0.097 3.903 5 H 0.076 0.924 6 O -0.536 6.536 7 C 0.119 3.881 8 N -0.568 5.568 9 C -0.224 4.224 10 H 0.058 0.942 11 C 0.008 3.992 12 N -0.895 5.895 13 Si 0.892 3.108 14 H -0.277 1.277 15 H -0.294 1.294 16 H -0.289 1.289 17 C 0.172 3.828 18 C -0.133 4.133 19 C -0.123 4.123 20 C -0.120 4.120 21 C -0.132 4.132 22 C 0.005 3.995 23 C -0.163 4.163 24 C -0.178 4.178 25 H 0.073 0.927 26 H 0.062 0.938 27 H 0.019 0.981 28 H 0.074 0.926 29 H 0.033 0.967 30 H 0.363 0.637 31 H 0.097 0.903 32 H 0.025 0.975 33 H 0.251 0.749 34 H 0.047 0.953 35 H 0.047 0.953 36 H 0.072 0.928 37 H 0.053 0.947 38 H 0.051 0.949 39 H 0.053 0.947 40 H 0.047 0.953 41 H 0.084 0.916 42 H 0.042 0.958 43 H 0.084 0.916 44 H 0.101 0.899 45 H 0.090 0.910 46 H 0.090 0.910 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.979 -6.389 6.563 11.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.225 5.225 3 C -0.102 4.102 4 C 0.034 3.966 5 H 0.093 0.907 6 O -0.339 6.339 7 C -0.009 4.009 8 N -0.285 5.285 9 C -0.354 4.354 10 H 0.075 0.925 11 C -0.190 4.190 12 N -0.539 5.539 13 Si 0.722 3.278 14 H -0.202 1.202 15 H -0.222 1.222 16 H -0.216 1.216 17 C 0.064 3.936 18 C -0.173 4.173 19 C -0.161 4.161 20 C -0.158 4.158 21 C -0.171 4.171 22 C -0.104 4.104 23 C -0.201 4.201 24 C -0.216 4.216 25 H 0.092 0.908 26 H 0.081 0.919 27 H 0.037 0.963 28 H 0.093 0.907 29 H 0.051 0.949 30 H 0.208 0.792 31 H 0.115 0.885 32 H 0.044 0.956 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.091 0.909 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.066 0.934 41 H 0.102 0.898 42 H 0.061 0.939 43 H 0.101 0.899 44 H 0.119 0.881 45 H 0.108 0.892 46 H 0.108 0.892 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -7.274 -6.618 5.992 11.516 hybrid contribution 0.907 0.192 0.371 0.998 sum -6.368 -6.427 6.363 11.061 Atomic orbital electron populations 1.22365 0.87632 1.01445 1.00577 1.61753 1.07351 1.14196 1.39248 1.22981 1.00392 0.87360 0.99455 1.22687 0.97629 0.92757 0.83487 0.90652 1.86500 1.24270 1.75941 1.47182 1.21567 1.02711 0.88684 0.87950 1.43661 1.20439 1.54371 1.10069 1.18826 0.87235 1.43008 0.86370 0.92464 1.25097 0.97670 0.99400 0.96870 1.70009 1.09141 1.45771 1.28966 0.86396 0.80408 0.78273 0.82712 1.20168 1.22169 1.21569 1.21300 0.87413 0.89966 0.94906 1.22946 0.96950 0.95805 1.01582 1.22285 0.97548 0.96362 0.99912 1.22066 0.96932 0.96851 0.99955 1.22509 0.98233 0.97585 0.98794 1.22457 1.04379 0.89579 0.94006 1.23041 0.92331 1.02037 1.02727 1.23019 0.98780 0.97673 1.02123 0.90792 0.91928 0.96254 0.90733 0.94912 0.79179 0.88504 0.95614 0.93916 0.93505 0.93394 0.90895 0.92870 0.93018 0.92770 0.93444 0.89781 0.93901 0.89851 0.88057 0.89157 0.89150 0.88490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 9.18 60.07 0.55 0.93 16 2 N -0.50 -7.58 4.78 -234.89 -1.12 -8.70 16 3 C 0.03 0.44 4.58 -3.83 -0.02 0.42 16 4 C 0.10 1.85 3.08 -26.73 -0.08 1.77 16 5 H 0.08 1.49 6.55 -51.93 -0.34 1.14 16 6 O -0.54 -11.36 12.68 -35.23 -0.45 -11.81 16 7 C 0.12 2.59 4.96 -4.04 -0.02 2.57 16 8 N -0.57 -13.27 2.44 -163.57 -0.40 -13.67 16 9 C -0.22 -5.80 7.24 -15.06 -0.11 -5.91 16 10 H 0.06 1.55 6.73 -52.49 -0.35 1.20 16 11 C 0.01 0.22 4.97 -17.43 -0.09 0.13 16 12 N -0.90 -24.58 11.49 55.49 0.64 -23.94 16 13 Si 0.89 21.36 29.60 -169.99 -5.03 16.33 16 14 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 15 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 16 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 17 C 0.17 3.55 3.39 -66.08 -0.22 3.32 16 18 C -0.13 -2.51 6.47 -24.55 -0.16 -2.67 16 19 C -0.12 -1.96 6.82 -25.08 -0.17 -2.14 16 20 C -0.12 -2.01 6.80 -25.62 -0.17 -2.18 16 21 C -0.13 -2.65 6.41 -25.62 -0.16 -2.82 16 22 C 0.00 0.06 5.27 -67.71 -0.36 -0.29 16 23 C -0.16 -1.93 10.46 -26.73 -0.28 -2.21 16 24 C -0.18 -1.94 9.72 -26.73 -0.26 -2.20 16 25 H 0.07 1.11 6.47 -51.93 -0.34 0.77 16 26 H 0.06 0.77 6.76 -51.93 -0.35 0.42 16 27 H 0.02 0.25 8.14 -51.93 -0.42 -0.18 16 28 H 0.07 1.25 8.08 -51.93 -0.42 0.83 16 29 H 0.03 0.51 8.12 -51.92 -0.42 0.09 16 30 H 0.36 7.41 9.05 45.56 0.41 7.82 16 31 H 0.10 2.39 5.56 -51.93 -0.29 2.10 16 32 H 0.03 0.54 7.92 -51.93 -0.41 0.13 16 33 H 0.25 6.74 8.31 -40.82 -0.34 6.40 16 34 H 0.05 0.93 7.84 -51.93 -0.41 0.52 16 35 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.07 1.54 6.63 -51.93 -0.34 1.20 16 37 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.08 1.98 6.92 -51.93 -0.36 1.62 16 42 H 0.04 0.84 8.14 -51.92 -0.42 0.41 16 43 H 0.08 1.05 8.08 -51.93 -0.42 0.63 16 44 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 45 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 46 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.10 1.08 7.25 -51.93 -0.38 0.71 16 LS Contribution 363.36 15.07 5.48 5.48 Total: -1.00 -27.46 363.36 -10.22 -37.68 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: -7.78 Total: 9.92 kcal Atomic # 6 Polarization: -9.72 SS G_CDS: -1.55 Total: -11.28 kcal Atomic # 7 Polarization: -45.43 SS G_CDS: -0.88 Total: -46.32 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: -0.45 Total: -11.81 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.03 Total: 16.33 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -27.46 -10.22 -37.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336786292.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.773 kcal (2) G-P(sol) polarization free energy of solvation -27.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds