Wall clock time and date at job start Tue Mar 31 2020 05:32:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46903 * 111.00072 * 2 1 4 4 C 1.53005 * 109.47007 * 199.45308 * 3 2 1 5 5 H 1.08999 * 109.46529 * 299.31088 * 4 3 2 6 6 O 1.42892 * 109.47087 * 59.31128 * 4 3 2 7 7 C 1.52997 * 109.46855 * 179.31297 * 4 3 2 8 8 N 1.46497 * 109.47041 * 174.35773 * 7 4 3 9 9 C 1.36940 * 119.99953 * 94.55043 * 8 7 4 10 10 H 1.08003 * 119.99332 * 216.59428 * 9 8 7 11 11 C 1.38805 * 120.00217 * 36.59599 * 9 8 7 12 12 N 1.31613 * 120.00187 * 21.86711 * 11 9 8 13 13 Si 1.86803 * 119.99897 * 201.87325 * 11 9 8 14 14 H 1.48496 * 109.47317 * 89.99782 * 13 11 9 15 15 H 1.48507 * 109.46938 * 209.99599 * 13 11 9 16 16 H 1.48498 * 109.46984 * 329.99749 * 13 11 9 17 17 C 1.46504 * 119.99824 * 274.82388 * 8 7 4 18 18 C 1.54270 * 110.03074 * 237.63256 * 17 8 7 19 19 C 1.54969 * 104.15986 * 217.13748 * 18 17 8 20 20 C 1.54895 * 102.77512 * 37.88603 * 19 18 17 21 21 C 1.53877 * 110.03103 * 120.41655 * 17 8 7 22 22 C 1.46901 * 111.00143 * 123.95480 * 2 1 3 23 23 C 1.53004 * 117.49902 * 124.79307 * 22 2 1 24 24 C 1.52995 * 117.49976 * 56.13383 * 22 2 1 25 25 H 1.08997 * 109.47737 * 62.52197 * 1 2 3 26 26 H 1.09001 * 109.47164 * 182.52580 * 1 2 3 27 27 H 1.09001 * 109.46978 * 302.52142 * 1 2 3 28 28 H 1.08996 * 109.46831 * 79.45079 * 3 2 1 29 29 H 1.08995 * 109.46829 * 319.44889 * 3 2 1 30 30 H 0.96697 * 114.00513 * 64.45439 * 6 4 3 31 31 H 1.09006 * 109.47211 * 54.35729 * 7 4 3 32 32 H 1.08996 * 109.47068 * 294.35528 * 7 4 3 33 33 H 0.96995 * 120.00495 * 180.02562 * 12 11 9 34 34 H 1.08995 * 110.01887 * 359.02382 * 17 8 7 35 35 H 1.08999 * 110.48835 * 335.78187 * 18 17 8 36 36 H 1.08997 * 110.48871 * 98.42959 * 18 17 8 37 37 H 1.08993 * 110.71761 * 279.57692 * 19 18 17 38 38 H 1.08996 * 110.92401 * 156.29630 * 19 18 17 39 39 H 1.08995 * 110.48613 * 203.40292 * 20 19 18 40 40 H 1.08999 * 110.59438 * 80.81937 * 20 19 18 41 41 H 1.09003 * 110.03185 * 238.56571 * 21 17 8 42 42 H 1.08998 * 110.03410 * 359.94655 * 21 17 8 43 43 H 1.08998 * 115.54754 * 270.45813 * 22 2 1 44 44 H 1.08994 * 117.49881 * 359.97438 * 23 22 2 45 45 H 1.08996 * 117.49601 * 145.02170 * 23 22 2 46 46 H 1.08998 * 117.49762 * 214.98144 * 24 22 2 47 47 H 1.08998 * 117.50127 * 359.97337 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 3.4480 1.3601 -0.4804 5 1 4.0491 0.7509 0.1946 6 8 3.5095 0.8122 -1.7987 7 6 3.9909 2.7904 -0.4967 8 7 5.4182 2.7673 -0.8263 9 6 5.8243 2.9373 -2.1230 10 1 6.6731 2.3858 -2.4997 11 6 5.1452 3.8185 -2.9531 12 7 4.4205 4.7863 -2.4333 13 14 5.2599 3.6306 -4.8081 14 1 4.1739 2.7360 -5.2831 15 1 5.1204 4.9624 -5.4501 16 1 6.5764 3.0440 -5.1657 17 6 6.4106 2.5562 0.2305 18 6 7.3999 3.7392 0.2703 19 6 8.7644 3.0815 0.5977 20 6 8.7078 1.7577 -0.2045 21 6 7.2417 1.2967 -0.0709 22 6 1.9954 -0.7660 1.1376 23 6 2.9716 -1.9038 0.8319 24 6 1.5426 -2.2204 1.2801 25 1 -0.3634 0.4741 -0.9117 26 1 -0.3633 -1.0267 0.0453 27 1 -0.3633 0.5525 0.8665 28 1 1.9500 1.7780 1.0103 29 1 1.3967 1.9904 -0.6681 30 1 3.0526 1.3417 -2.4665 31 1 3.8520 3.2430 0.4852 32 1 3.4547 3.3740 -1.2450 33 1 3.9456 5.4019 -3.0133 34 1 5.9128 2.4532 1.1947 35 1 7.4391 4.2365 -0.6989 36 1 7.1188 4.4455 1.0514 37 1 8.8501 2.8825 1.6658 38 1 9.5896 3.7058 0.2551 39 1 9.3811 1.0191 0.2303 40 1 8.9589 1.9323 -1.2507 41 1 7.1480 0.5828 0.7475 42 1 6.9061 0.8420 -1.0029 43 1 2.1566 -0.1970 2.0532 44 1 3.2228 -2.0843 -0.2132 45 1 3.7746 -2.0836 1.5467 46 1 1.4061 -2.6084 2.2894 47 1 0.8537 -2.6089 0.5300 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336786393.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:59 Heat of formation + Delta-G solvation = -3.985943 kcal Electronic energy + Delta-G solvation = -24083.027968 eV Core-core repulsion = 20881.021009 eV Total energy + Delta-G solvation = -3202.006959 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -38.60082 -37.70217 -36.15112 -33.89568 -33.46133 -31.04062 -29.34562 -27.78432 -26.79993 -25.96178 -24.24195 -22.39700 -22.10455 -20.67728 -20.00076 -19.82498 -19.00469 -16.70103 -16.02923 -15.53804 -15.33513 -14.72209 -14.63363 -14.38781 -14.12341 -13.95145 -13.56043 -13.14632 -12.82273 -12.68824 -12.48891 -12.29532 -11.72397 -11.47497 -11.24887 -11.19884 -11.04826 -10.81108 -10.64553 -10.39062 -10.28799 -10.24699 -10.22110 -10.05634 -9.99852 -9.92162 -9.82769 -9.75994 -9.45579 -8.95969 -8.37723 -7.98471 -6.44551 -5.71152 -3.23012 3.41962 3.49799 3.52835 3.91560 3.98664 4.55437 5.04424 5.08766 5.15513 5.28873 5.35542 5.38095 5.47836 5.50931 5.54720 5.59020 5.68474 5.71231 5.78230 5.83843 5.95722 5.99196 6.13325 6.15602 6.18216 6.31955 6.35467 6.38754 6.40977 6.49119 6.58257 6.61535 6.67886 6.71060 6.91640 6.95851 7.03901 7.26427 7.32640 7.35826 7.41953 7.63098 7.93567 8.59827 8.78563 9.27960 9.91070 10.48801 11.29913 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.013620 B = 0.006384 C = 0.004953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.330726 B = 4384.962795 C = 5651.797033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.502 5.502 3 C 0.027 3.973 4 C 0.100 3.900 5 H 0.076 0.924 6 O -0.538 6.538 7 C 0.119 3.881 8 N -0.569 5.569 9 C -0.225 4.225 10 H 0.059 0.941 11 C 0.006 3.994 12 N -0.896 5.896 13 Si 0.892 3.108 14 H -0.286 1.286 15 H -0.296 1.296 16 H -0.280 1.280 17 C 0.172 3.828 18 C -0.129 4.129 19 C -0.124 4.124 20 C -0.117 4.117 21 C -0.134 4.134 22 C 0.010 3.990 23 C -0.156 4.156 24 C -0.182 4.182 25 H 0.066 0.934 26 H 0.063 0.937 27 H 0.019 0.981 28 H 0.035 0.965 29 H 0.072 0.928 30 H 0.362 0.638 31 H 0.023 0.977 32 H 0.098 0.902 33 H 0.251 0.749 34 H 0.044 0.956 35 H 0.085 0.915 36 H 0.043 0.957 37 H 0.051 0.949 38 H 0.052 0.948 39 H 0.046 0.954 40 H 0.061 0.939 41 H 0.041 0.959 42 H 0.075 0.925 43 H 0.083 0.917 44 H 0.104 0.896 45 H 0.089 0.911 46 H 0.089 0.911 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.579 -7.931 7.720 11.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.226 5.226 3 C -0.102 4.102 4 C 0.038 3.962 5 H 0.094 0.906 6 O -0.340 6.340 7 C -0.009 4.009 8 N -0.287 5.287 9 C -0.355 4.355 10 H 0.077 0.923 11 C -0.193 4.193 12 N -0.540 5.540 13 Si 0.722 3.278 14 H -0.213 1.213 15 H -0.223 1.223 16 H -0.205 1.205 17 C 0.064 3.936 18 C -0.169 4.169 19 C -0.162 4.162 20 C -0.155 4.155 21 C -0.173 4.173 22 C -0.099 4.099 23 C -0.194 4.194 24 C -0.220 4.220 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.038 0.962 28 H 0.053 0.947 29 H 0.090 0.910 30 H 0.207 0.793 31 H 0.042 0.958 32 H 0.116 0.884 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.103 0.897 36 H 0.062 0.938 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.080 0.920 41 H 0.059 0.941 42 H 0.093 0.907 43 H 0.101 0.899 44 H 0.122 0.878 45 H 0.108 0.892 46 H 0.108 0.892 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.176 -8.466 7.511 11.755 hybrid contribution -0.686 0.853 -0.389 1.161 sum -3.862 -7.614 7.122 11.118 Atomic orbital electron populations 1.22363 0.88081 1.01403 1.00263 1.61763 1.06458 1.14272 1.40065 1.22995 0.99549 0.87785 0.99859 1.22615 0.90947 0.97873 0.84810 0.90586 1.86489 1.78953 1.51737 1.16854 1.21576 0.87057 0.92701 0.99548 1.43744 0.98998 1.82568 1.03382 1.18844 1.14037 1.16638 0.85945 0.92337 1.25037 1.01392 0.94944 0.97922 1.70025 1.35020 1.15181 1.33729 0.86458 0.78168 0.76598 0.86552 1.21336 1.22280 1.20528 1.21015 0.89937 0.91889 0.90762 1.22789 0.93538 0.98461 1.02068 1.22447 0.98260 0.96907 0.98566 1.22247 0.97006 0.96341 0.99907 1.22609 0.94650 0.98715 1.01336 1.22415 1.04522 0.89423 0.93539 1.23038 0.91910 1.01476 1.02991 1.23047 0.99223 0.97710 1.01992 0.91553 0.91776 0.96233 0.94704 0.90968 0.79306 0.95839 0.88437 0.93895 0.93818 0.89673 0.93785 0.92979 0.92930 0.93534 0.92027 0.94052 0.90673 0.89911 0.87752 0.89236 0.89246 0.88675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.39 60.06 0.56 0.90 16 2 N -0.50 -7.56 4.69 -234.89 -1.10 -8.66 16 3 C 0.03 0.44 4.69 -3.82 -0.02 0.42 16 4 C 0.10 1.92 3.27 -26.73 -0.09 1.83 16 5 H 0.08 1.53 7.74 -51.93 -0.40 1.13 16 6 O -0.54 -11.33 12.91 -35.23 -0.45 -11.79 16 7 C 0.12 2.60 4.81 -4.04 -0.02 2.58 16 8 N -0.57 -13.25 2.34 -164.39 -0.38 -13.63 16 9 C -0.22 -5.78 7.39 -15.06 -0.11 -5.89 16 10 H 0.06 1.58 7.23 -52.48 -0.38 1.20 16 11 C 0.01 0.15 4.90 -17.44 -0.09 0.06 16 12 N -0.90 -24.58 11.50 55.49 0.64 -23.94 16 13 Si 0.89 21.30 29.61 -169.99 -5.03 16.27 16 14 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 15 H -0.30 -7.22 7.11 56.52 0.40 -6.82 16 16 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 17 C 0.17 3.54 3.42 -66.81 -0.23 3.31 16 18 C -0.13 -2.59 6.42 -25.03 -0.16 -2.75 16 19 C -0.12 -2.07 6.91 -24.69 -0.17 -2.24 16 20 C -0.12 -2.01 6.83 -25.07 -0.17 -2.18 16 21 C -0.13 -2.54 6.16 -25.61 -0.16 -2.70 16 22 C 0.01 0.14 4.67 -67.71 -0.32 -0.18 16 23 C -0.16 -2.10 10.46 -26.69 -0.28 -2.38 16 24 C -0.18 -2.11 9.70 -26.70 -0.26 -2.36 16 25 H 0.07 0.82 8.12 -51.93 -0.42 0.39 16 26 H 0.06 0.73 6.68 -51.93 -0.35 0.38 16 27 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.03 0.55 7.84 -51.93 -0.41 0.14 16 29 H 0.07 1.18 7.92 -51.93 -0.41 0.77 16 30 H 0.36 7.38 9.03 45.56 0.41 7.79 16 31 H 0.02 0.50 8.03 -51.93 -0.42 0.09 16 32 H 0.10 2.40 5.52 -51.93 -0.29 2.11 16 33 H 0.25 6.76 8.31 -40.82 -0.34 6.42 16 34 H 0.04 0.87 7.89 -51.93 -0.41 0.46 16 35 H 0.08 2.00 7.03 -51.93 -0.37 1.63 16 36 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 41 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.07 1.62 7.02 -51.93 -0.36 1.25 16 43 H 0.08 1.13 7.89 -51.93 -0.41 0.72 16 44 H 0.10 1.60 8.14 -51.93 -0.42 1.18 16 45 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 46 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 47 H 0.09 1.09 7.25 -51.93 -0.38 0.71 16 LS Contribution 366.33 15.07 5.52 5.52 Total: -1.00 -27.32 366.33 -10.27 -37.58 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: -7.95 Total: 10.22 kcal Atomic # 6 Polarization: -10.07 SS G_CDS: -1.50 Total: -11.57 kcal Atomic # 7 Polarization: -45.39 SS G_CDS: -0.85 Total: -46.24 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: -0.45 Total: -11.79 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.03 Total: 16.27 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -27.32 -10.27 -37.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336786393.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.598 kcal (2) G-P(sol) polarization free energy of solvation -27.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds