Wall clock time and date at job start Tue Mar 31 2020 06:05:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46903 * 109.47339 * 2 1 4 4 C 1.46844 * 111.00174 * 45.78649 * 3 2 1 5 5 C 1.53039 * 109.52598 * 185.84318 * 4 3 2 6 6 C 1.53117 * 109.27593 * 300.81958 * 5 4 3 7 7 C 1.53119 * 109.15850 * 57.65766 * 6 5 4 8 8 H 1.08994 * 109.53662 * 62.30256 * 7 6 5 9 9 C 1.53008 * 109.50265 * 182.40430 * 7 6 5 10 10 N 1.46902 * 109.46622 * 294.80006 * 9 7 6 11 11 C 1.46906 * 110.99573 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47020 * 179.97438 * 11 10 9 13 13 C 1.53000 * 109.47381 * 300.00339 * 12 11 10 14 14 C 1.53010 * 109.47013 * 60.00056 * 12 11 10 15 15 C 1.52996 * 109.47077 * 179.97438 * 12 11 10 16 16 C 1.50699 * 109.47047 * 180.02562 * 15 12 11 17 17 H 1.07999 * 120.00136 * 0.02562 * 16 15 12 18 18 C 1.37876 * 120.00116 * 180.02562 * 16 15 12 19 19 N 1.31512 * 120.00112 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00300 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47104 * 60.00043 * 20 18 16 22 22 H 1.48496 * 109.47638 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47155 * 300.00196 * 20 18 16 24 24 C 1.46845 * 111.00322 * 169.99881 * 3 2 1 25 25 H 1.08990 * 109.47118 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47412 * 300.00468 * 1 2 3 27 27 H 1.08998 * 109.46888 * 60.00233 * 1 2 3 28 28 H 1.08993 * 109.47485 * 239.99893 * 2 1 3 29 29 H 1.09002 * 109.47352 * 119.99686 * 2 1 3 30 30 H 1.09003 * 109.46310 * 305.86126 * 4 3 2 31 31 H 1.08997 * 109.46135 * 65.82553 * 4 3 2 32 32 H 1.08994 * 109.49990 * 60.76315 * 5 4 3 33 33 H 1.09003 * 109.49920 * 180.83995 * 5 4 3 34 34 H 1.09000 * 109.52338 * 297.75162 * 6 5 4 35 35 H 1.09000 * 109.52264 * 177.55610 * 6 5 4 36 36 H 1.08990 * 109.46924 * 174.80144 * 9 7 6 37 37 H 1.09004 * 109.46978 * 54.80021 * 9 7 6 38 38 H 1.00896 * 111.00219 * 303.95583 * 10 9 7 39 39 H 1.09002 * 109.46991 * 299.99841 * 11 10 9 40 40 H 1.09000 * 109.47202 * 60.00133 * 11 10 9 41 41 H 1.09002 * 109.47185 * 59.99218 * 13 12 11 42 42 H 1.08994 * 109.47063 * 180.02562 * 13 12 11 43 43 H 1.09008 * 109.46699 * 300.00074 * 13 12 11 44 44 H 1.08992 * 109.46866 * 59.99807 * 14 12 11 45 45 H 1.09000 * 109.46687 * 179.97438 * 14 12 11 46 46 H 1.09002 * 109.47213 * 300.00043 * 14 12 11 47 47 H 1.08993 * 109.47277 * 299.99937 * 15 12 11 48 48 H 1.09000 * 109.47041 * 60.00238 * 15 12 11 49 49 H 0.96998 * 120.00461 * 180.02562 * 19 18 16 50 50 H 1.09002 * 109.46282 * 54.14337 * 24 3 2 51 51 H 1.08996 * 109.45254 * 294.17149 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.2939 2.1999 0.9826 5 6 1.7265 3.6622 0.8539 6 6 3.2354 3.7657 1.0921 7 6 3.9655 2.8705 0.0871 8 1 3.7651 3.2205 -0.9255 9 6 5.4707 2.9216 0.3568 10 7 5.9692 4.2785 0.0954 11 6 7.4142 4.3656 0.3450 12 6 7.8957 5.7901 0.0621 13 6 7.6079 6.1452 -1.3980 14 6 7.1597 6.7688 0.9796 15 6 9.4005 5.8810 0.3227 16 6 9.8746 7.2842 0.0446 17 1 9.1727 8.0360 -0.2845 18 6 11.2045 7.6081 0.2105 19 7 12.0594 6.6925 0.6108 20 14 11.7923 9.3473 -0.1348 21 1 11.0779 10.2972 0.7555 22 1 13.2531 9.4353 0.1169 23 1 11.5131 9.6919 -1.5520 24 6 3.4680 1.4311 0.2381 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 0.2222 2.1207 0.7994 31 1 1.5178 1.8420 1.9875 32 1 1.4902 4.0248 -0.1465 33 1 1.1985 4.2643 1.5934 34 1 3.4673 3.4397 2.1060 35 1 3.5552 4.7992 0.9587 36 1 5.9812 2.2148 -0.2973 37 1 5.6626 2.6580 1.3969 38 1 5.7458 4.5711 -0.8440 39 1 7.6192 4.1122 1.3852 40 1 7.9386 3.6687 -0.3089 41 1 6.5357 6.0805 -1.5832 42 1 7.9513 7.1598 -1.5996 43 1 8.1322 5.4479 -2.0516 44 1 7.3647 6.5158 2.0197 45 1 7.5031 7.7835 0.7783 46 1 6.0875 6.7041 0.7944 47 1 9.6051 5.6282 1.3630 48 1 9.9251 5.1837 -0.3306 49 1 12.9949 6.9204 0.7279 50 1 3.9756 0.7936 -0.4859 51 1 3.6815 1.0769 1.2465 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337880697.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:16 Heat of formation + Delta-G solvation = -27.766124 kcal Electronic energy + Delta-G solvation = -23024.426430 eV Core-core repulsion = 19957.221380 eV Total energy + Delta-G solvation = -3067.205050 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.53986 -37.61791 -35.49351 -33.51893 -32.22430 -31.12087 -29.85799 -27.01154 -26.30084 -25.99471 -24.96398 -23.73781 -22.67185 -22.00582 -20.66470 -19.81503 -17.78748 -16.41857 -16.18188 -15.42333 -15.34961 -15.21928 -14.64148 -14.42897 -14.18878 -13.87544 -13.64828 -13.41976 -13.08791 -12.84215 -12.51130 -12.40991 -12.11258 -11.97975 -11.94572 -11.71782 -11.64186 -11.30462 -11.13476 -10.94327 -10.84627 -10.76507 -10.61243 -10.45270 -10.37205 -10.32341 -10.20244 -10.06034 -9.63903 -8.97675 -8.80165 -8.52263 -8.29034 -8.00827 -5.93660 -3.93705 3.36423 3.40911 3.43218 3.61748 4.42648 4.52289 4.65563 4.73571 4.76221 4.89927 4.94188 5.11326 5.15553 5.25740 5.31791 5.40540 5.41934 5.48188 5.55702 5.58406 5.61642 5.71380 5.72409 5.79959 5.81858 5.86112 5.90349 6.01623 6.05044 6.06681 6.30305 6.35309 6.40319 6.41384 6.55626 6.70408 6.82867 6.86706 6.88094 6.89318 7.24914 7.27821 7.30128 7.46025 7.71802 7.75906 7.89288 8.06758 8.51329 9.11518 9.68824 11.17980 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.046876 B = 0.002639 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.181609 B =10607.873943 C =10863.358772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.050 3.950 3 N -0.538 5.538 4 C 0.049 3.951 5 C -0.119 4.119 6 C -0.107 4.107 7 C -0.079 4.079 8 H 0.076 0.924 9 C 0.063 3.937 10 N -0.684 5.684 11 C 0.071 3.929 12 C -0.058 4.058 13 C -0.129 4.129 14 C -0.115 4.115 15 C 0.033 3.967 16 C -0.506 4.506 17 H 0.058 0.942 18 C 0.054 3.946 19 N -0.898 5.898 20 Si 0.888 3.112 21 H -0.278 1.278 22 H -0.289 1.289 23 H -0.278 1.278 24 C 0.062 3.938 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.064 0.936 28 H 0.074 0.926 29 H 0.030 0.970 30 H 0.078 0.922 31 H 0.029 0.971 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.054 0.946 35 H 0.079 0.921 36 H 0.024 0.976 37 H 0.067 0.933 38 H 0.338 0.662 39 H 0.064 0.936 40 H 0.021 0.979 41 H 0.034 0.966 42 H 0.063 0.937 43 H 0.039 0.961 44 H 0.038 0.962 45 H 0.053 0.947 46 H 0.042 0.958 47 H 0.014 0.986 48 H 0.012 0.988 49 H 0.259 0.741 50 H 0.071 0.929 51 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.926 -11.810 -0.433 24.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.078 4.078 3 N -0.263 5.263 4 C -0.078 4.078 5 C -0.157 4.157 6 C -0.144 4.144 7 C -0.098 4.098 8 H 0.094 0.906 9 C -0.067 4.067 10 N -0.315 5.315 11 C -0.058 4.058 12 C -0.058 4.058 13 C -0.186 4.186 14 C -0.172 4.172 15 C -0.004 4.004 16 C -0.545 4.545 17 H 0.076 0.924 18 C -0.147 4.147 19 N -0.538 5.538 20 Si 0.716 3.284 21 H -0.203 1.203 22 H -0.215 1.215 23 H -0.204 1.204 24 C -0.066 4.066 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.083 0.917 28 H 0.092 0.908 29 H 0.049 0.951 30 H 0.096 0.904 31 H 0.047 0.953 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.098 0.902 36 H 0.042 0.958 37 H 0.085 0.915 38 H 0.157 0.843 39 H 0.083 0.917 40 H 0.040 0.960 41 H 0.052 0.948 42 H 0.082 0.918 43 H 0.058 0.942 44 H 0.057 0.943 45 H 0.072 0.928 46 H 0.061 0.939 47 H 0.033 0.967 48 H 0.030 0.970 49 H 0.069 0.931 50 H 0.090 0.910 51 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -21.998 -11.417 -0.225 24.786 hybrid contribution 1.106 -0.038 -0.098 1.111 sum -20.892 -11.455 -0.323 23.829 Atomic orbital electron populations 1.21940 0.95106 1.01786 1.02522 1.22072 0.95677 0.89335 1.00681 1.61977 1.04026 1.10218 1.50094 1.22229 0.98635 0.93981 0.92983 1.21634 0.96857 0.95009 1.02199 1.21515 0.93486 1.01183 0.98228 1.21146 0.94124 0.94047 1.00506 0.90584 1.21924 0.93599 0.90409 1.00760 1.60532 1.15659 1.22927 1.32403 1.22093 0.85648 0.97869 1.00188 1.20616 0.98677 0.91838 0.94673 1.21767 0.98121 1.02396 0.96324 1.21592 0.98109 0.99299 0.98248 1.19120 0.87640 0.96942 0.96698 1.21203 0.93096 0.95870 1.44282 0.92353 1.25022 0.97118 0.96857 0.95668 1.69955 1.03188 1.33168 1.47496 0.86721 0.77529 0.85388 0.78723 1.20318 1.21480 1.20371 1.22086 0.87575 0.97462 0.99512 0.92293 0.92345 0.91734 0.90757 0.95125 0.90419 0.95269 0.91299 0.91768 0.92720 0.90217 0.95765 0.91466 0.84346 0.91742 0.96026 0.94754 0.91777 0.94171 0.94272 0.92777 0.93871 0.96739 0.96967 0.93140 0.91020 0.94927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.03 9.16 37.16 0.34 -0.69 16 2 C 0.05 0.40 5.99 -3.82 -0.02 0.38 16 3 N -0.54 -5.13 4.81 -234.67 -1.13 -6.26 16 4 C 0.05 0.44 4.85 -3.83 -0.02 0.42 16 5 C -0.12 -1.11 6.09 -26.65 -0.16 -1.27 16 6 C -0.11 -1.14 5.14 -26.61 -0.14 -1.28 16 7 C -0.08 -0.85 2.49 -90.53 -0.23 -1.07 16 8 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 9 C 0.06 0.78 5.08 -3.82 -0.02 0.76 16 10 N -0.68 -9.79 5.23 -113.77 -0.59 -10.38 16 11 C 0.07 1.23 4.65 -3.82 -0.02 1.21 16 12 C -0.06 -1.15 0.60 -154.51 -0.09 -1.25 16 13 C -0.13 -2.41 7.89 37.16 0.29 -2.12 16 14 C -0.12 -2.24 8.06 37.16 0.30 -1.94 16 15 C 0.03 0.85 4.04 -27.89 -0.11 0.74 16 16 C -0.51 -13.94 7.65 -34.44 -0.26 -14.20 16 17 H 0.06 1.56 5.68 -52.49 -0.30 1.26 16 18 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 19 N -0.90 -27.05 13.29 55.43 0.74 -26.32 16 20 Si 0.89 21.75 29.54 -169.99 -5.02 16.72 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 C 0.06 0.62 4.71 -3.83 -0.02 0.60 16 25 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.06 0.38 6.21 -51.93 -0.32 0.05 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.03 0.25 8.08 -51.93 -0.42 -0.17 16 30 H 0.08 0.61 5.81 -51.93 -0.30 0.31 16 31 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.08 0.96 7.84 -51.93 -0.41 0.55 16 36 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.34 4.71 6.77 -39.29 -0.27 4.44 16 39 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 40 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.03 0.54 6.57 -51.93 -0.34 0.20 16 42 H 0.06 1.30 6.62 -51.93 -0.34 0.96 16 43 H 0.04 0.75 8.14 -51.92 -0.42 0.32 16 44 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.05 1.13 6.61 -51.93 -0.34 0.78 16 46 H 0.04 0.75 7.60 -51.93 -0.39 0.36 16 47 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 49 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 50 H 0.07 0.69 8.12 -51.93 -0.42 0.27 16 51 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 378.68 15.07 5.71 5.71 Total: -1.00 -28.79 378.68 -10.74 -39.53 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -10.18 Total: -0.72 kcal Atomic # 6 Polarization: -18.02 SS G_CDS: -0.25 Total: -18.28 kcal Atomic # 7 Polarization: -41.97 SS G_CDS: -0.99 Total: -42.96 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -28.79 -10.74 -39.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337880697.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.759 kcal (2) G-P(sol) polarization free energy of solvation -28.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds