Wall clock time and date at job start Tue Mar 31 2020 06:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46903 * 109.47339 * 2 1 4 4 C 1.46844 * 111.00174 * 45.78649 * 3 2 1 5 5 C 1.53039 * 109.52598 * 185.84318 * 4 3 2 6 6 C 1.53117 * 109.27593 * 300.81958 * 5 4 3 7 7 C 1.53119 * 109.15850 * 57.65766 * 6 5 4 8 8 H 1.08994 * 109.53662 * 62.30256 * 7 6 5 9 9 C 1.53008 * 109.50265 * 182.40430 * 7 6 5 10 10 N 1.46902 * 109.46622 * 294.80006 * 9 7 6 11 11 C 1.46906 * 110.99573 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47020 * 179.97438 * 11 10 9 13 13 C 1.53000 * 109.47381 * 300.00339 * 12 11 10 14 14 C 1.53010 * 109.47013 * 60.00056 * 12 11 10 15 15 C 1.52996 * 109.47077 * 179.97438 * 12 11 10 16 16 C 1.50699 * 109.47047 * 180.02562 * 15 12 11 17 17 H 1.07999 * 120.00136 * 0.02562 * 16 15 12 18 18 C 1.37876 * 120.00116 * 180.02562 * 16 15 12 19 19 N 1.31512 * 120.00112 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00300 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47104 * 60.00043 * 20 18 16 22 22 H 1.48496 * 109.47638 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47155 * 300.00196 * 20 18 16 24 24 C 1.46845 * 111.00322 * 169.99881 * 3 2 1 25 25 H 1.08990 * 109.47118 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47412 * 300.00468 * 1 2 3 27 27 H 1.08998 * 109.46888 * 60.00233 * 1 2 3 28 28 H 1.08993 * 109.47485 * 239.99893 * 2 1 3 29 29 H 1.09002 * 109.47352 * 119.99686 * 2 1 3 30 30 H 1.09003 * 109.46310 * 305.86126 * 4 3 2 31 31 H 1.08997 * 109.46135 * 65.82553 * 4 3 2 32 32 H 1.08994 * 109.49990 * 60.76315 * 5 4 3 33 33 H 1.09003 * 109.49920 * 180.83995 * 5 4 3 34 34 H 1.09000 * 109.52338 * 297.75162 * 6 5 4 35 35 H 1.09000 * 109.52264 * 177.55610 * 6 5 4 36 36 H 1.08990 * 109.46924 * 174.80144 * 9 7 6 37 37 H 1.09004 * 109.46978 * 54.80021 * 9 7 6 38 38 H 1.00896 * 111.00219 * 303.95583 * 10 9 7 39 39 H 1.09002 * 109.46991 * 299.99841 * 11 10 9 40 40 H 1.09000 * 109.47202 * 60.00133 * 11 10 9 41 41 H 1.09002 * 109.47185 * 59.99218 * 13 12 11 42 42 H 1.08994 * 109.47063 * 180.02562 * 13 12 11 43 43 H 1.09008 * 109.46699 * 300.00074 * 13 12 11 44 44 H 1.08992 * 109.46866 * 59.99807 * 14 12 11 45 45 H 1.09000 * 109.46687 * 179.97438 * 14 12 11 46 46 H 1.09002 * 109.47213 * 300.00043 * 14 12 11 47 47 H 1.08993 * 109.47277 * 299.99937 * 15 12 11 48 48 H 1.09000 * 109.47041 * 60.00238 * 15 12 11 49 49 H 0.96998 * 120.00461 * 180.02562 * 19 18 16 50 50 H 1.09002 * 109.46282 * 54.14337 * 24 3 2 51 51 H 1.08996 * 109.45254 * 294.17149 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.2939 2.1999 0.9826 5 6 1.7265 3.6622 0.8539 6 6 3.2354 3.7657 1.0921 7 6 3.9655 2.8705 0.0871 8 1 3.7651 3.2205 -0.9255 9 6 5.4707 2.9216 0.3568 10 7 5.9692 4.2785 0.0954 11 6 7.4142 4.3656 0.3450 12 6 7.8957 5.7901 0.0621 13 6 7.6079 6.1452 -1.3980 14 6 7.1597 6.7688 0.9796 15 6 9.4005 5.8810 0.3227 16 6 9.8746 7.2842 0.0446 17 1 9.1727 8.0360 -0.2845 18 6 11.2045 7.6081 0.2105 19 7 12.0594 6.6925 0.6108 20 14 11.7923 9.3473 -0.1348 21 1 11.0779 10.2972 0.7555 22 1 13.2531 9.4353 0.1169 23 1 11.5131 9.6919 -1.5520 24 6 3.4680 1.4311 0.2381 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 0.2222 2.1207 0.7994 31 1 1.5178 1.8420 1.9875 32 1 1.4902 4.0248 -0.1465 33 1 1.1985 4.2643 1.5934 34 1 3.4673 3.4397 2.1060 35 1 3.5552 4.7992 0.9587 36 1 5.9812 2.2148 -0.2973 37 1 5.6626 2.6580 1.3969 38 1 5.7458 4.5711 -0.8440 39 1 7.6192 4.1122 1.3852 40 1 7.9386 3.6687 -0.3089 41 1 6.5357 6.0805 -1.5832 42 1 7.9513 7.1598 -1.5996 43 1 8.1322 5.4479 -2.0516 44 1 7.3647 6.5158 2.0197 45 1 7.5031 7.7835 0.7783 46 1 6.0875 6.7041 0.7944 47 1 9.6051 5.6282 1.3630 48 1 9.9251 5.1837 -0.3306 49 1 12.9949 6.9204 0.7279 50 1 3.9756 0.7936 -0.4859 51 1 3.6815 1.0769 1.2465 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337880697.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:15 Heat of formation + Delta-G solvation = -44.343666 kcal Electronic energy + Delta-G solvation = -23025.145286 eV Core-core repulsion = 19957.221380 eV Total energy + Delta-G solvation = -3067.923906 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.34808 -39.08701 -36.60054 -34.86113 -33.90887 -32.06238 -30.63642 -28.96665 -27.87552 -27.24015 -26.02464 -25.04296 -23.69803 -23.34026 -21.46640 -20.63615 -19.43056 -18.32107 -17.18353 -16.66404 -16.47720 -16.18567 -15.92499 -15.58590 -15.29280 -15.07306 -14.93703 -14.40686 -14.25168 -14.11038 -13.86345 -13.81851 -13.39137 -13.11387 -13.08072 -12.76125 -12.72466 -12.53864 -12.45911 -12.34644 -12.23813 -12.12888 -12.01321 -11.92563 -11.88017 -11.46550 -11.37801 -11.16035 -11.11022 -10.84184 -10.66912 -10.49414 -9.26601 -9.20890 -8.13227 -6.20311 1.41224 1.43651 1.50883 2.44277 2.87707 3.20377 3.37732 3.84859 3.94078 4.00676 4.15193 4.21594 4.23786 4.27465 4.35162 4.40800 4.47271 4.55370 4.59324 4.63076 4.68809 4.69889 4.79463 4.83828 4.86081 4.92744 4.95488 4.98157 5.10156 5.10401 5.14718 5.19239 5.22360 5.23776 5.26499 5.31760 5.50674 5.52937 5.55090 5.56742 5.60058 5.67726 5.88878 5.93679 6.08982 6.19667 6.20364 6.38134 6.57583 6.94669 7.46820 8.98918 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.046876 B = 0.002639 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.181609 B =10607.873943 C =10863.358772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.047 3.953 3 N -0.547 5.547 4 C 0.050 3.950 5 C -0.115 4.115 6 C -0.104 4.104 7 C -0.069 4.069 8 H 0.073 0.927 9 C 0.066 3.934 10 N -0.677 5.677 11 C 0.084 3.916 12 C -0.054 4.054 13 C -0.122 4.122 14 C -0.106 4.106 15 C 0.039 3.961 16 C -0.514 4.514 17 H 0.066 0.934 18 C -0.006 4.006 19 N -0.938 5.938 20 Si 0.957 3.043 21 H -0.268 1.268 22 H -0.288 1.288 23 H -0.267 1.267 24 C 0.065 3.935 25 H 0.070 0.930 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.076 0.924 29 H 0.030 0.970 30 H 0.090 0.910 31 H 0.026 0.974 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.048 0.952 35 H 0.067 0.933 36 H 0.027 0.973 37 H 0.062 0.938 38 H 0.343 0.657 39 H 0.053 0.947 40 H 0.015 0.985 41 H 0.068 0.932 42 H 0.046 0.954 43 H 0.035 0.965 44 H 0.028 0.972 45 H 0.038 0.962 46 H 0.069 0.931 47 H -0.017 1.017 48 H -0.017 1.017 49 H 0.259 0.741 50 H 0.074 0.926 51 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.093 -11.475 -1.080 26.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.080 4.080 3 N -0.272 5.272 4 C -0.077 4.077 5 C -0.153 4.153 6 C -0.142 4.142 7 C -0.089 4.089 8 H 0.092 0.908 9 C -0.063 4.063 10 N -0.309 5.309 11 C -0.046 4.046 12 C -0.054 4.054 13 C -0.179 4.179 14 C -0.163 4.163 15 C 0.002 3.998 16 C -0.552 4.552 17 H 0.084 0.916 18 C -0.203 4.203 19 N -0.580 5.580 20 Si 0.783 3.217 21 H -0.193 1.193 22 H -0.214 1.214 23 H -0.192 1.192 24 C -0.063 4.063 25 H 0.089 0.911 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.094 0.906 29 H 0.048 0.952 30 H 0.108 0.892 31 H 0.044 0.956 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.067 0.933 35 H 0.086 0.914 36 H 0.045 0.955 37 H 0.081 0.919 38 H 0.163 0.837 39 H 0.072 0.928 40 H 0.033 0.967 41 H 0.087 0.913 42 H 0.065 0.935 43 H 0.054 0.946 44 H 0.047 0.953 45 H 0.057 0.943 46 H 0.087 0.913 47 H 0.001 0.999 48 H 0.001 0.999 49 H 0.068 0.932 50 H 0.092 0.908 51 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -24.194 -11.083 -0.880 26.626 hybrid contribution 1.757 -0.207 0.120 1.773 sum -22.437 -11.290 -0.761 25.128 Atomic orbital electron populations 1.21904 0.93942 1.02619 1.02424 1.22139 0.96661 0.88467 1.00727 1.61994 1.03657 1.11225 1.50326 1.22248 0.99281 0.93505 0.92695 1.21601 0.95792 0.95569 1.02329 1.21468 0.94600 1.00285 0.97801 1.21031 0.92770 0.94776 1.00280 0.90847 1.21933 0.94729 0.89137 1.00543 1.60458 1.13184 1.24490 1.32791 1.21790 0.87590 0.95799 0.99404 1.20477 0.94996 0.93907 0.96041 1.21683 1.00281 1.01087 0.94872 1.21493 0.99464 0.97942 0.97395 1.19013 0.91446 0.95450 0.93936 1.21587 0.93380 0.96821 1.43374 0.91570 1.25945 0.97514 1.01198 0.95637 1.70104 1.03473 1.35462 1.48933 0.85615 0.76862 0.80201 0.79070 1.19320 1.21408 1.19242 1.22014 0.88192 0.96715 0.99407 0.91072 0.92130 0.92050 0.90590 0.95201 0.89193 0.95578 0.91592 0.90736 0.93335 0.91395 0.95476 0.91925 0.83693 0.92804 0.96686 0.91300 0.93462 0.94584 0.95280 0.94327 0.91260 0.99887 0.99876 0.93193 0.90758 0.95279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.16 71.98 0.66 -1.02 16 2 C 0.05 0.68 5.99 86.30 0.52 1.19 16 3 N -0.55 -9.44 4.81 -896.37 -4.31 -13.75 16 4 C 0.05 0.80 4.85 86.33 0.42 1.21 16 5 C -0.12 -1.92 6.09 30.65 0.19 -1.74 16 6 C -0.10 -2.06 5.14 30.67 0.16 -1.91 16 7 C -0.07 -1.38 2.49 -10.74 -0.03 -1.41 16 8 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 9 C 0.07 1.54 5.08 86.31 0.44 1.98 16 10 N -0.68 -18.37 5.23 -513.86 -2.69 -21.06 16 11 C 0.08 2.89 4.65 86.30 0.40 3.29 16 12 C -0.05 -2.15 0.60 -52.18 -0.03 -2.18 16 13 C -0.12 -4.42 7.89 71.98 0.57 -3.85 16 14 C -0.11 -4.04 8.06 71.99 0.58 -3.46 16 15 C 0.04 2.05 4.04 29.85 0.12 2.18 16 16 C -0.51 -28.67 7.65 25.60 0.20 -28.47 16 17 H 0.07 3.53 5.68 -2.91 -0.02 3.51 16 18 C -0.01 -0.37 5.46 84.65 0.46 0.09 16 19 N -0.94 -57.95 13.29 21.45 0.28 -57.66 16 20 Si 0.96 44.79 29.54 68.60 2.03 46.82 16 21 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 22 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 23 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 24 C 0.07 1.20 4.71 86.33 0.41 1.60 16 25 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.06 0.64 6.21 -2.39 -0.01 0.63 16 27 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.03 0.43 8.08 -2.39 -0.02 0.41 16 30 H 0.09 1.21 5.81 -2.39 -0.01 1.20 16 31 H 0.03 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.07 1.52 7.84 -2.39 -0.02 1.50 16 36 H 0.03 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 38 H 0.34 8.76 6.77 -89.70 -0.61 8.15 16 39 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 40 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 41 H 0.07 2.01 6.57 -2.39 -0.02 1.99 16 42 H 0.05 1.86 6.62 -2.39 -0.02 1.85 16 43 H 0.03 1.31 8.14 -2.38 -0.02 1.29 16 44 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.04 1.57 6.61 -2.39 -0.02 1.55 16 46 H 0.07 2.27 7.60 -2.39 -0.02 2.25 16 47 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 48 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 49 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 50 H 0.07 1.32 8.12 -2.39 -0.02 1.30 16 51 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 Total: -1.00 -62.30 378.68 0.62 -61.68 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: 0.24 Total: 16.45 kcal Atomic # 6 Polarization: -37.53 SS G_CDS: 5.05 Total: -32.47 kcal Atomic # 7 Polarization: -85.77 SS G_CDS: -6.71 Total: -92.47 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -62.30 0.62 -61.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337880697.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.337 kcal (2) G-P(sol) polarization free energy of solvation -62.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds