Wall clock time and date at job start Tue Mar 31 2020 06:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46904 * 109.47193 * 2 1 4 4 C 1.46845 * 110.99770 * 66.04729 * 3 2 1 5 5 C 1.53038 * 109.52386 * 174.16450 * 4 3 2 6 6 C 1.53115 * 109.28003 * 59.17616 * 5 4 3 7 7 C 1.53123 * 109.16324 * 302.34742 * 6 5 4 8 8 H 1.08994 * 109.50499 * 297.67884 * 7 6 5 9 9 C 1.52997 * 109.50582 * 177.59214 * 7 6 5 10 10 N 1.46907 * 109.46765 * 65.07926 * 9 7 6 11 11 C 1.46902 * 110.99665 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.46901 * 179.97438 * 11 10 9 13 13 C 1.53002 * 109.46637 * 60.00331 * 12 11 10 14 14 C 1.52996 * 109.47302 * 300.00243 * 12 11 10 15 15 C 1.53000 * 109.46886 * 180.02562 * 12 11 10 16 16 C 1.50703 * 109.46912 * 180.02562 * 15 12 11 17 17 H 1.07996 * 119.99751 * 0.02562 * 16 15 12 18 18 C 1.37877 * 120.00001 * 180.02562 * 16 15 12 19 19 N 1.31517 * 120.00094 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99955 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47171 * 89.99544 * 20 18 16 22 22 H 1.48500 * 109.46632 * 209.99795 * 20 18 16 23 23 H 1.48494 * 109.47053 * 329.99231 * 20 18 16 24 24 C 1.46847 * 110.99702 * 301.79721 * 3 2 1 25 25 H 1.09005 * 109.46848 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47537 * 299.99480 * 1 2 3 27 27 H 1.09004 * 109.47442 * 60.00345 * 1 2 3 28 28 H 1.09003 * 109.47537 * 240.00520 * 2 1 3 29 29 H 1.09000 * 109.47604 * 120.00139 * 2 1 3 30 30 H 1.08997 * 109.46642 * 54.14492 * 4 3 2 31 31 H 1.09008 * 109.46224 * 294.17701 * 4 3 2 32 32 H 1.08996 * 109.49963 * 299.23868 * 5 4 3 33 33 H 1.08998 * 109.53510 * 179.14182 * 5 4 3 34 34 H 1.08996 * 109.52706 * 182.44367 * 6 5 4 35 35 H 1.09005 * 109.57557 * 62.28072 * 6 5 4 36 36 H 1.08995 * 109.47319 * 305.08196 * 9 7 6 37 37 H 1.08993 * 109.46983 * 185.07827 * 9 7 6 38 38 H 1.00898 * 110.99982 * 303.95153 * 10 9 7 39 39 H 1.09001 * 109.46712 * 60.00151 * 11 10 9 40 40 H 1.09002 * 109.47411 * 300.00262 * 11 10 9 41 41 H 1.09000 * 109.46986 * 179.97438 * 13 12 11 42 42 H 1.08993 * 109.47662 * 299.99908 * 13 12 11 43 43 H 1.09002 * 109.47075 * 60.00414 * 13 12 11 44 44 H 1.08992 * 109.47554 * 299.99692 * 14 12 11 45 45 H 1.09004 * 109.47108 * 59.99942 * 14 12 11 46 46 H 1.09000 * 109.46870 * 179.97438 * 14 12 11 47 47 H 1.09002 * 109.47398 * 300.00496 * 15 12 11 48 48 H 1.09001 * 109.47194 * 60.00677 * 15 12 11 49 49 H 0.97000 * 120.00333 * 179.97438 * 19 18 16 50 50 H 1.08999 * 109.42715 * 65.79710 * 24 3 2 51 51 H 1.09004 * 109.49573 * 305.83975 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6703 2.0666 1.2529 5 6 2.3183 3.4528 1.2789 6 6 1.8233 4.2649 0.0790 7 6 2.1566 3.5100 -1.2109 8 1 3.2378 3.4075 -1.3035 9 6 1.6122 4.2857 -2.4120 10 7 2.3145 5.5712 -2.5238 11 6 1.8172 6.3448 -3.6694 12 6 2.5702 7.6741 -3.7525 13 6 4.0654 7.4028 -3.9308 14 6 2.3460 8.4687 -2.4645 15 6 2.0518 8.4801 -4.9452 16 6 2.7939 9.7891 -5.0275 17 1 3.5590 10.0225 -4.3020 18 6 2.4960 10.6887 -6.0291 19 7 1.5646 10.4041 -6.9129 20 14 3.4164 12.3110 -6.1315 21 1 4.6224 12.1431 -6.9816 22 1 2.5318 13.3451 -6.7258 23 1 3.8265 12.7343 -4.7685 24 6 1.5140 2.1219 -1.1652 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 2.0316 1.4809 2.0981 31 1 0.5873 2.1708 1.3199 32 1 3.4020 3.3488 1.2257 33 1 2.0467 3.9649 2.2020 34 1 2.3154 5.2374 0.0693 35 1 0.7445 4.4032 0.1516 36 1 0.5458 4.4650 -2.2757 37 1 1.7698 3.7053 -3.3210 38 1 2.2375 6.1009 -1.6686 39 1 0.7521 6.5383 -3.5421 40 1 1.9765 5.7785 -4.5870 41 1 4.6018 8.3498 -3.9905 42 1 4.4344 6.8288 -3.0810 43 1 4.2251 6.8367 -4.8485 44 1 1.2809 8.6620 -2.3375 45 1 2.7150 7.8946 -1.6145 46 1 2.8828 9.4155 -2.5236 47 1 2.2111 7.9141 -5.8631 48 1 0.9866 8.6733 -4.8178 49 1 1.3548 11.0371 -7.6173 50 1 0.4317 2.2250 -1.0872 51 1 1.7618 1.5768 -2.0760 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337880698.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:18 Heat of formation + Delta-G solvation = -29.418829 kcal Electronic energy + Delta-G solvation = -23145.479854 eV Core-core repulsion = 20078.203137 eV Total energy + Delta-G solvation = -3067.276717 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.69010 -37.63896 -35.52772 -33.55335 -32.26871 -30.93240 -29.65674 -27.03615 -26.30099 -25.99648 -25.16911 -24.08617 -22.49902 -22.15427 -20.88131 -19.56668 -17.83803 -16.26600 -16.05747 -15.75942 -15.31926 -14.96566 -14.76764 -14.42787 -14.21381 -13.94110 -13.79524 -13.40684 -13.03441 -12.87294 -12.63304 -12.52403 -12.14015 -12.08179 -11.96503 -11.73595 -11.64960 -11.45298 -10.97886 -10.94079 -10.86908 -10.74568 -10.65134 -10.55406 -10.46675 -10.31601 -10.19005 -10.05695 -9.64417 -8.98005 -8.79455 -8.50977 -8.29380 -8.01988 -5.93961 -3.93904 3.35041 3.41411 3.44232 3.64426 4.44643 4.53146 4.59296 4.65736 4.73966 4.77159 4.95434 5.07444 5.12887 5.20787 5.27619 5.36768 5.41814 5.42475 5.53982 5.54263 5.58061 5.64181 5.68564 5.77383 5.81943 5.83753 5.86065 5.96993 6.01803 6.04405 6.19378 6.28101 6.36017 6.41209 6.55132 6.70758 6.82838 6.86522 6.86922 6.87624 7.24595 7.28075 7.30357 7.46346 7.71878 7.75984 7.89168 8.06636 8.51260 9.11574 9.68746 11.17769 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.041486 B = 0.002736 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.768770 B =10231.518429 C =10535.858256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.050 3.950 3 N -0.536 5.536 4 C 0.054 3.946 5 C -0.116 4.116 6 C -0.119 4.119 7 C -0.082 4.082 8 H 0.088 0.912 9 C 0.064 3.936 10 N -0.685 5.685 11 C 0.070 3.930 12 C -0.058 4.058 13 C -0.116 4.116 14 C -0.129 4.129 15 C 0.033 3.967 16 C -0.506 4.506 17 H 0.059 0.941 18 C 0.054 3.946 19 N -0.898 5.898 20 Si 0.888 3.112 21 H -0.281 1.281 22 H -0.288 1.288 23 H -0.275 1.275 24 C 0.061 3.939 25 H 0.059 0.941 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.033 0.967 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.054 0.946 36 H 0.022 0.978 37 H 0.069 0.931 38 H 0.337 0.663 39 H 0.021 0.979 40 H 0.065 0.935 41 H 0.053 0.947 42 H 0.042 0.958 43 H 0.039 0.961 44 H 0.039 0.961 45 H 0.032 0.968 46 H 0.064 0.936 47 H 0.015 0.985 48 H 0.012 0.988 49 H 0.258 0.742 50 H 0.035 0.965 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.480 -18.893 15.800 24.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.078 4.078 3 N -0.259 5.259 4 C -0.074 4.074 5 C -0.154 4.154 6 C -0.156 4.156 7 C -0.101 4.101 8 H 0.106 0.894 9 C -0.066 4.066 10 N -0.318 5.318 11 C -0.059 4.059 12 C -0.058 4.058 13 C -0.173 4.173 14 C -0.186 4.186 15 C -0.004 4.004 16 C -0.544 4.544 17 H 0.077 0.923 18 C -0.147 4.147 19 N -0.538 5.538 20 Si 0.716 3.284 21 H -0.208 1.208 22 H -0.214 1.214 23 H -0.200 1.200 24 C -0.068 4.068 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.051 0.949 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.073 0.927 36 H 0.040 0.960 37 H 0.088 0.912 38 H 0.157 0.843 39 H 0.039 0.961 40 H 0.084 0.916 41 H 0.072 0.928 42 H 0.062 0.938 43 H 0.058 0.942 44 H 0.058 0.942 45 H 0.051 0.949 46 H 0.083 0.917 47 H 0.033 0.967 48 H 0.030 0.970 49 H 0.068 0.932 50 H 0.053 0.947 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.526 -19.098 15.269 24.457 hybrid contribution -1.498 1.229 0.127 1.942 sum -2.024 -17.869 15.396 23.673 Atomic orbital electron populations 1.22450 0.98358 1.02278 1.02166 1.22152 0.92806 0.90078 1.02741 1.62102 1.59434 1.01886 1.02513 1.22101 0.97890 0.95427 0.91956 1.21567 1.01405 0.94370 0.98020 1.21653 1.00501 0.99094 0.94388 1.21187 1.01930 0.92928 0.94026 0.89363 1.21910 0.94973 0.91941 0.97812 1.60573 1.58660 1.04966 1.07560 1.22103 0.95975 0.94873 0.92921 1.20620 0.95527 0.92276 0.97417 1.21593 0.95500 1.00483 0.99721 1.21766 1.00428 1.00475 0.95924 1.19129 0.95904 0.94076 0.91324 1.21244 1.19694 1.01644 1.11807 0.92290 1.25022 0.95344 0.98326 0.95963 1.69968 1.31641 1.36117 1.16102 0.86662 0.79711 0.83877 0.78162 1.20774 1.21423 1.19952 1.22099 0.96926 0.94460 0.93290 0.92168 0.92632 0.92259 0.90624 0.90848 0.91107 0.94900 0.90970 0.91715 0.91256 0.92695 0.95987 0.91243 0.84288 0.96067 0.91640 0.92757 0.93848 0.94202 0.94183 0.94875 0.91718 0.96693 0.96963 0.93193 0.94711 0.90760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.36 9.21 37.15 0.34 -1.02 16 2 C 0.05 0.38 6.08 -3.83 -0.02 0.36 16 3 N -0.54 -4.94 4.86 -234.67 -1.14 -6.08 16 4 C 0.05 0.46 5.05 -3.83 -0.02 0.44 16 5 C -0.12 -1.02 6.09 -26.65 -0.16 -1.18 16 6 C -0.12 -1.18 5.00 -26.61 -0.13 -1.32 16 7 C -0.08 -0.87 2.56 -90.54 -0.23 -1.11 16 8 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 9 C 0.06 0.79 5.15 -3.82 -0.02 0.77 16 10 N -0.69 -10.03 5.71 -113.78 -0.65 -10.68 16 11 C 0.07 1.23 4.65 -3.82 -0.02 1.21 16 12 C -0.06 -1.17 0.60 -154.51 -0.09 -1.26 16 13 C -0.12 -2.28 8.06 37.16 0.30 -1.98 16 14 C -0.13 -2.42 7.89 37.16 0.29 -2.12 16 15 C 0.03 0.84 4.04 -27.88 -0.11 0.73 16 16 C -0.51 -13.94 7.65 -34.44 -0.26 -14.21 16 17 H 0.06 1.58 5.68 -52.49 -0.30 1.29 16 18 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 19 N -0.90 -27.08 13.29 55.43 0.74 -26.34 16 20 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 24 C 0.06 0.59 4.12 -3.83 -0.02 0.57 16 25 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.05 0.40 6.68 -51.93 -0.35 0.06 16 27 H 0.06 0.46 6.51 -51.93 -0.34 0.12 16 28 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.50 8.06 -51.93 -0.42 0.08 16 30 H 0.07 0.54 8.06 -51.93 -0.42 0.12 16 31 H 0.03 0.28 6.76 -51.92 -0.35 -0.07 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.73 6.80 -51.93 -0.35 0.38 16 35 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.02 0.28 8.14 -51.93 -0.42 -0.15 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.34 4.76 5.09 -39.29 -0.20 4.56 16 39 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.05 1.14 6.62 -51.93 -0.34 0.79 16 42 H 0.04 0.77 7.60 -51.93 -0.39 0.38 16 43 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 45 H 0.03 0.53 6.57 -51.93 -0.34 0.19 16 46 H 0.06 1.32 6.62 -51.93 -0.34 0.97 16 47 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 48 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 49 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 50 H 0.03 0.34 6.60 -51.93 -0.34 0.00 16 51 H 0.07 0.71 8.12 -51.93 -0.42 0.29 16 LS Contribution 374.39 15.07 5.64 5.64 Total: -1.00 -28.98 374.39 -10.65 -39.63 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -9.97 Total: -0.22 kcal Atomic # 6 Polarization: -18.42 SS G_CDS: -0.25 Total: -18.67 kcal Atomic # 7 Polarization: -42.05 SS G_CDS: -1.05 Total: -43.10 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -28.98 -10.65 -39.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337880698.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.211 kcal (2) G-P(sol) polarization free energy of solvation -28.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds