Wall clock time and date at job start Tue Mar 31 2020 06:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46904 * 109.47193 * 2 1 4 4 C 1.46845 * 110.99770 * 66.04729 * 3 2 1 5 5 C 1.53038 * 109.52386 * 174.16450 * 4 3 2 6 6 C 1.53115 * 109.28003 * 59.17616 * 5 4 3 7 7 C 1.53123 * 109.16324 * 302.34742 * 6 5 4 8 8 H 1.08994 * 109.50499 * 297.67884 * 7 6 5 9 9 C 1.52997 * 109.50582 * 177.59214 * 7 6 5 10 10 N 1.46907 * 109.46765 * 65.07926 * 9 7 6 11 11 C 1.46902 * 110.99665 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.46901 * 179.97438 * 11 10 9 13 13 C 1.53002 * 109.46637 * 60.00331 * 12 11 10 14 14 C 1.52996 * 109.47302 * 300.00243 * 12 11 10 15 15 C 1.53000 * 109.46886 * 180.02562 * 12 11 10 16 16 C 1.50703 * 109.46912 * 180.02562 * 15 12 11 17 17 H 1.07996 * 119.99751 * 0.02562 * 16 15 12 18 18 C 1.37877 * 120.00001 * 180.02562 * 16 15 12 19 19 N 1.31517 * 120.00094 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99955 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47171 * 89.99544 * 20 18 16 22 22 H 1.48500 * 109.46632 * 209.99795 * 20 18 16 23 23 H 1.48494 * 109.47053 * 329.99231 * 20 18 16 24 24 C 1.46847 * 110.99702 * 301.79721 * 3 2 1 25 25 H 1.09005 * 109.46848 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47537 * 299.99480 * 1 2 3 27 27 H 1.09004 * 109.47442 * 60.00345 * 1 2 3 28 28 H 1.09003 * 109.47537 * 240.00520 * 2 1 3 29 29 H 1.09000 * 109.47604 * 120.00139 * 2 1 3 30 30 H 1.08997 * 109.46642 * 54.14492 * 4 3 2 31 31 H 1.09008 * 109.46224 * 294.17701 * 4 3 2 32 32 H 1.08996 * 109.49963 * 299.23868 * 5 4 3 33 33 H 1.08998 * 109.53510 * 179.14182 * 5 4 3 34 34 H 1.08996 * 109.52706 * 182.44367 * 6 5 4 35 35 H 1.09005 * 109.57557 * 62.28072 * 6 5 4 36 36 H 1.08995 * 109.47319 * 305.08196 * 9 7 6 37 37 H 1.08993 * 109.46983 * 185.07827 * 9 7 6 38 38 H 1.00898 * 110.99982 * 303.95153 * 10 9 7 39 39 H 1.09001 * 109.46712 * 60.00151 * 11 10 9 40 40 H 1.09002 * 109.47411 * 300.00262 * 11 10 9 41 41 H 1.09000 * 109.46986 * 179.97438 * 13 12 11 42 42 H 1.08993 * 109.47662 * 299.99908 * 13 12 11 43 43 H 1.09002 * 109.47075 * 60.00414 * 13 12 11 44 44 H 1.08992 * 109.47554 * 299.99692 * 14 12 11 45 45 H 1.09004 * 109.47108 * 59.99942 * 14 12 11 46 46 H 1.09000 * 109.46870 * 179.97438 * 14 12 11 47 47 H 1.09002 * 109.47398 * 300.00496 * 15 12 11 48 48 H 1.09001 * 109.47194 * 60.00677 * 15 12 11 49 49 H 0.97000 * 120.00333 * 179.97438 * 19 18 16 50 50 H 1.08999 * 109.42715 * 65.79710 * 24 3 2 51 51 H 1.09004 * 109.49573 * 305.83975 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6703 2.0666 1.2529 5 6 2.3183 3.4528 1.2789 6 6 1.8233 4.2649 0.0790 7 6 2.1566 3.5100 -1.2109 8 1 3.2378 3.4075 -1.3035 9 6 1.6122 4.2857 -2.4120 10 7 2.3145 5.5712 -2.5238 11 6 1.8172 6.3448 -3.6694 12 6 2.5702 7.6741 -3.7525 13 6 4.0654 7.4028 -3.9308 14 6 2.3460 8.4687 -2.4645 15 6 2.0518 8.4801 -4.9452 16 6 2.7939 9.7891 -5.0275 17 1 3.5590 10.0225 -4.3020 18 6 2.4960 10.6887 -6.0291 19 7 1.5646 10.4041 -6.9129 20 14 3.4164 12.3110 -6.1315 21 1 4.6224 12.1431 -6.9816 22 1 2.5318 13.3451 -6.7258 23 1 3.8265 12.7343 -4.7685 24 6 1.5140 2.1219 -1.1652 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 2.0316 1.4809 2.0981 31 1 0.5873 2.1708 1.3199 32 1 3.4020 3.3488 1.2257 33 1 2.0467 3.9649 2.2020 34 1 2.3154 5.2374 0.0693 35 1 0.7445 4.4032 0.1516 36 1 0.5458 4.4650 -2.2757 37 1 1.7698 3.7053 -3.3210 38 1 2.2375 6.1009 -1.6686 39 1 0.7521 6.5383 -3.5421 40 1 1.9765 5.7785 -4.5870 41 1 4.6018 8.3498 -3.9905 42 1 4.4344 6.8288 -3.0810 43 1 4.2251 6.8367 -4.8485 44 1 1.2809 8.6620 -2.3375 45 1 2.7150 7.8946 -1.6145 46 1 2.8828 9.4155 -2.5236 47 1 2.2111 7.9141 -5.8631 48 1 0.9866 8.6733 -4.8178 49 1 1.3548 11.0371 -7.6173 50 1 0.4317 2.2250 -1.0872 51 1 1.7618 1.5768 -2.0760 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337880698.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:17 Heat of formation + Delta-G solvation = -46.386715 kcal Electronic energy + Delta-G solvation = -23146.215637 eV Core-core repulsion = 20078.203137 eV Total energy + Delta-G solvation = -3068.012499 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.47022 -39.10657 -36.64175 -34.85041 -33.94868 -31.97138 -30.32906 -28.99674 -27.88801 -27.28357 -25.99767 -25.46443 -23.82272 -23.21326 -21.73878 -20.33200 -19.49565 -18.32882 -16.97874 -16.78846 -16.57425 -16.15939 -15.63840 -15.61992 -15.32343 -15.15437 -14.91109 -14.58814 -14.23841 -14.18475 -13.87097 -13.78519 -13.41307 -13.23168 -13.02102 -12.78620 -12.75393 -12.64706 -12.56632 -12.40348 -12.24301 -12.19539 -12.11197 -11.90712 -11.59708 -11.53514 -11.36117 -11.28884 -11.10210 -10.84930 -10.67879 -10.50176 -9.27668 -9.17969 -8.13629 -6.20634 1.41218 1.41895 1.52407 2.44103 2.92102 3.20238 3.39393 3.81715 3.89233 3.98502 4.13427 4.15248 4.22619 4.33579 4.35375 4.39269 4.45688 4.48820 4.53489 4.60166 4.65174 4.70820 4.76950 4.81934 4.84963 4.91019 4.96762 4.98522 5.00322 5.08233 5.09054 5.17772 5.21306 5.22532 5.27330 5.29297 5.37825 5.52198 5.53867 5.54674 5.59315 5.66911 5.88086 5.93313 6.09623 6.20259 6.22029 6.37855 6.56513 6.94537 7.46652 8.98833 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.041486 B = 0.002736 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.768770 B =10231.518429 C =10535.858256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.049 3.951 3 N -0.547 5.547 4 C 0.054 3.946 5 C -0.113 4.113 6 C -0.117 4.117 7 C -0.072 4.072 8 H 0.075 0.925 9 C 0.066 3.934 10 N -0.681 5.681 11 C 0.082 3.918 12 C -0.055 4.055 13 C -0.107 4.107 14 C -0.122 4.122 15 C 0.039 3.961 16 C -0.513 4.513 17 H 0.066 0.934 18 C -0.006 4.006 19 N -0.939 5.939 20 Si 0.957 3.043 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.262 1.262 24 C 0.065 3.935 25 H 0.070 0.930 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.033 0.967 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.065 0.935 35 H 0.054 0.946 36 H 0.024 0.976 37 H 0.066 0.934 38 H 0.343 0.657 39 H 0.015 0.985 40 H 0.055 0.945 41 H 0.039 0.961 42 H 0.067 0.933 43 H 0.029 0.971 44 H 0.036 0.964 45 H 0.066 0.934 46 H 0.047 0.953 47 H -0.017 1.017 48 H -0.016 1.016 49 H 0.259 0.741 50 H 0.034 0.966 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.720 -19.470 17.802 26.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.078 4.078 3 N -0.270 5.270 4 C -0.073 4.073 5 C -0.150 4.150 6 C -0.155 4.155 7 C -0.091 4.091 8 H 0.094 0.906 9 C -0.064 4.064 10 N -0.314 5.314 11 C -0.047 4.047 12 C -0.055 4.055 13 C -0.164 4.164 14 C -0.179 4.179 15 C 0.001 3.999 16 C -0.551 4.551 17 H 0.084 0.916 18 C -0.202 4.202 19 N -0.580 5.580 20 Si 0.782 3.218 21 H -0.201 1.201 22 H -0.213 1.213 23 H -0.186 1.186 24 C -0.063 4.063 25 H 0.089 0.911 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.095 0.905 29 H 0.101 0.899 30 H 0.100 0.900 31 H 0.051 0.949 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.042 0.958 37 H 0.085 0.915 38 H 0.164 0.836 39 H 0.033 0.967 40 H 0.074 0.926 41 H 0.058 0.942 42 H 0.086 0.914 43 H 0.048 0.952 44 H 0.055 0.945 45 H 0.085 0.915 46 H 0.066 0.934 47 H 0.002 0.998 48 H 0.002 0.998 49 H 0.068 0.932 50 H 0.052 0.948 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.243 -19.688 17.296 26.207 hybrid contribution -1.756 1.339 -0.494 2.263 sum -1.513 -18.349 16.802 24.926 Atomic orbital electron populations 1.22392 0.97924 1.02823 1.01591 1.22204 0.93136 0.89202 1.03291 1.62106 1.59798 1.02608 1.02515 1.22125 0.97884 0.95340 0.91978 1.21546 1.00941 0.94552 0.97994 1.21638 1.00462 0.98964 0.94451 1.21056 1.00988 0.93472 0.93604 0.90622 1.21934 0.94946 0.90827 0.98653 1.60508 1.58757 1.05364 1.06752 1.21812 0.95232 0.93764 0.93927 1.20486 0.96055 0.93104 0.95858 1.21498 0.94728 0.99861 1.00293 1.21679 1.00169 0.99870 0.96181 1.19018 0.94239 0.94147 0.92451 1.21619 1.19556 1.02294 1.11629 0.91557 1.25936 0.96283 1.02271 0.95728 1.70112 1.33421 1.37555 1.16944 0.85565 0.78327 0.79208 0.78686 1.20133 1.21254 1.18611 1.22000 0.96730 0.93859 0.93725 0.91098 0.92814 0.93143 0.90540 0.89878 0.90040 0.94895 0.91605 0.90424 0.91645 0.92707 0.95787 0.91545 0.83628 0.96677 0.92634 0.94218 0.91393 0.95178 0.94519 0.91487 0.93380 0.99817 0.99812 0.93179 0.94755 0.90882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.33 9.21 71.98 0.66 -1.67 16 2 C 0.05 0.66 6.08 86.30 0.52 1.18 16 3 N -0.55 -9.12 4.86 -896.35 -4.35 -13.48 16 4 C 0.05 0.81 5.05 86.33 0.44 1.25 16 5 C -0.11 -1.75 6.09 30.65 0.19 -1.56 16 6 C -0.12 -2.12 5.00 30.67 0.15 -1.97 16 7 C -0.07 -1.44 2.56 -10.74 -0.03 -1.47 16 8 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 9 C 0.07 1.56 5.15 86.30 0.44 2.01 16 10 N -0.68 -18.95 5.71 -513.88 -2.93 -21.88 16 11 C 0.08 2.87 4.65 86.30 0.40 3.27 16 12 C -0.05 -2.20 0.60 -52.18 -0.03 -2.23 16 13 C -0.11 -4.11 8.06 71.98 0.58 -3.53 16 14 C -0.12 -4.43 7.89 71.98 0.57 -3.86 16 15 C 0.04 2.05 4.04 29.85 0.12 2.17 16 16 C -0.51 -28.65 7.65 25.60 0.20 -28.46 16 17 H 0.07 3.55 5.68 -2.91 -0.02 3.53 16 18 C -0.01 -0.33 5.46 84.65 0.46 0.14 16 19 N -0.94 -57.97 13.29 21.45 0.28 -57.68 16 20 Si 0.96 44.79 29.54 68.60 2.03 46.81 16 21 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 22 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 23 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 24 C 0.07 1.17 4.12 86.33 0.36 1.53 16 25 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 26 H 0.05 0.68 6.68 -2.39 -0.02 0.67 16 27 H 0.05 0.71 6.51 -2.39 -0.02 0.70 16 28 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.08 0.95 8.06 -2.39 -0.02 0.93 16 30 H 0.08 1.05 8.06 -2.39 -0.02 1.03 16 31 H 0.03 0.50 6.76 -2.38 -0.02 0.48 16 32 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.06 1.23 6.80 -2.39 -0.02 1.22 16 35 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 36 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 37 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.34 8.91 5.09 -89.70 -0.46 8.46 16 39 H 0.02 0.54 8.14 -2.39 -0.02 0.52 16 40 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.04 1.62 6.62 -2.39 -0.02 1.61 16 42 H 0.07 2.28 7.60 -2.39 -0.02 2.26 16 43 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.07 1.97 6.57 -2.38 -0.02 1.96 16 46 H 0.05 1.90 6.62 -2.39 -0.02 1.88 16 47 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 48 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 49 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 50 H 0.03 0.62 6.60 -2.39 -0.02 0.61 16 51 H 0.07 1.32 8.12 -2.39 -0.02 1.30 16 Total: -1.00 -62.53 374.39 0.46 -62.07 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: 0.40 Total: 17.36 kcal Atomic # 6 Polarization: -38.24 SS G_CDS: 5.03 Total: -33.21 kcal Atomic # 7 Polarization: -86.04 SS G_CDS: -7.00 Total: -93.04 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.81 kcal Total: -62.53 0.46 -62.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337880698.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.685 kcal (2) G-P(sol) polarization free energy of solvation -62.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds