Wall clock time and date at job start Tue Mar 31 2020 05:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52999 * 109.46623 * 119.99900 * 2 1 3 5 5 C 1.52997 * 109.47127 * 239.99836 * 2 1 3 6 6 C 1.53002 * 109.46817 * 60.00361 * 5 2 1 7 7 N 1.46909 * 109.46750 * 179.97438 * 6 5 2 8 8 C 1.46947 * 110.99925 * 293.79834 * 7 6 5 9 9 C 1.53052 * 109.36528 * 176.81323 * 8 7 6 10 10 N 1.46956 * 109.36092 * 58.39902 * 9 8 7 11 11 C 1.46909 * 110.99593 * 176.81392 * 10 9 8 12 12 C 1.52995 * 109.47064 * 293.79957 * 11 10 9 13 13 C 1.53005 * 109.47308 * 180.02562 * 12 11 10 14 14 C 1.50698 * 109.47310 * 179.97438 * 13 12 11 15 15 H 1.07995 * 120.00115 * 0.02562 * 14 13 12 16 16 C 1.37878 * 119.99688 * 179.97438 * 14 13 12 17 17 N 1.31510 * 120.00257 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99577 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47618 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.47014 * 120.00481 * 18 16 14 21 21 H 1.48504 * 109.47131 * 239.99818 * 18 16 14 22 22 C 1.46957 * 110.88403 * 300.68027 * 10 9 8 23 23 C 1.46956 * 110.99593 * 169.99816 * 7 6 5 24 24 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 25 25 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 27 27 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 28 28 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 30 30 H 1.09001 * 109.47362 * 60.00551 * 4 2 1 31 31 H 1.09002 * 109.46716 * 179.97438 * 4 2 1 32 32 H 1.09000 * 109.47486 * 299.99829 * 4 2 1 33 33 H 1.09002 * 109.47153 * 180.02562 * 5 2 1 34 34 H 1.08996 * 109.46952 * 300.00302 * 5 2 1 35 35 H 1.09002 * 109.47075 * 299.99262 * 6 5 2 36 36 H 1.08996 * 109.47407 * 60.00219 * 6 5 2 37 37 H 1.09001 * 109.49236 * 296.78126 * 8 7 6 38 38 H 1.08998 * 109.49014 * 56.84415 * 8 7 6 39 39 H 1.09003 * 109.48923 * 298.43466 * 9 8 7 40 40 H 1.08996 * 109.49151 * 178.36490 * 9 8 7 41 41 H 1.08991 * 109.46998 * 53.80324 * 11 10 9 42 42 H 1.09005 * 109.46612 * 173.80382 * 11 10 9 43 43 H 1.09005 * 109.47455 * 299.99940 * 12 11 10 44 44 H 1.08998 * 109.47387 * 60.00101 * 12 11 10 45 45 H 1.09005 * 109.46585 * 300.00193 * 13 12 11 46 46 H 1.08998 * 109.47043 * 59.99610 * 13 12 11 47 47 H 0.97004 * 120.00143 * 179.97438 * 17 16 14 48 48 H 1.08999 * 109.48697 * 299.35495 * 22 10 9 49 49 H 1.08998 * 109.49058 * 179.29153 * 22 10 9 50 50 H 1.08994 * 109.49351 * 303.15450 * 23 7 6 51 51 H 1.09003 * 109.48824 * 63.22111 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 2.0401 -0.7213 -1.2492 6 6 1.5301 0.0001 -2.4984 7 7 2.0203 -0.6922 -3.6979 8 6 3.4817 -0.5843 -3.8079 9 6 3.9595 -1.3830 -5.0229 10 7 3.3037 -0.8680 -6.2330 11 6 3.7939 -1.5603 -7.4325 12 6 5.2698 -1.2207 -7.6498 13 6 5.7802 -1.9412 -8.8994 14 6 7.2338 -1.6062 -9.1139 15 1 7.7428 -0.9460 -8.4274 16 6 7.9141 -2.1436 -10.1860 17 7 7.2944 -2.9481 -11.0217 18 14 9.7160 -1.7290 -10.4514 19 1 10.1758 -0.8102 -9.3792 20 1 10.5217 -2.9760 -10.4132 21 1 9.8834 -1.0719 -11.7726 22 6 1.8422 -0.9759 -6.1230 23 6 1.3645 -0.1772 -4.9080 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6767 1.9563 0.8900 28 1 3.1301 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 -1.7489 1.2493 31 1 3.1300 -0.7217 1.2491 32 1 1.6766 -0.2074 2.1393 33 1 3.1301 -0.7217 -1.2490 34 1 1.6767 -1.7489 -1.2492 35 1 0.4401 0.0000 -2.4985 36 1 1.8935 1.0277 -2.4985 37 1 3.7611 0.4624 -3.9280 38 1 3.9447 -0.9833 -2.9054 39 1 3.7042 -2.4343 -4.8903 40 1 5.0400 -1.2806 -5.1234 41 1 3.6842 -2.6366 -7.3011 42 1 3.2158 -1.2391 -8.2990 43 1 5.3795 -0.1442 -7.7813 44 1 5.8479 -1.5417 -6.7834 45 1 5.6704 -3.0177 -8.7684 46 1 5.2020 -1.6198 -9.7658 47 1 7.7730 -3.3259 -11.7762 48 1 1.5629 -2.0226 -6.0029 49 1 1.3791 -0.5769 -7.0255 50 1 0.2840 -0.2795 -4.8076 51 1 1.6198 0.8741 -5.0406 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338728641.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:25 Heat of formation + Delta-G solvation = -24.270707 kcal Electronic energy + Delta-G solvation = -22725.005554 eV Core-core repulsion = 19657.952077 eV Total energy + Delta-G solvation = -3067.053477 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.54880 -38.07643 -35.68956 -33.51142 -31.59170 -30.81210 -29.61138 -27.59800 -27.59182 -26.98020 -24.99741 -23.70744 -22.55001 -21.80891 -19.90223 -19.62481 -18.82756 -16.57389 -16.09775 -15.53923 -15.06586 -14.94551 -14.73451 -14.68108 -14.42644 -14.22923 -13.97277 -13.85973 -13.40284 -13.12640 -12.72587 -12.32634 -12.25503 -12.10543 -12.03833 -11.95350 -11.60646 -11.48728 -11.22361 -11.19403 -11.08586 -10.90957 -10.81200 -10.75507 -10.66492 -10.56227 -10.36479 -10.30954 -9.55979 -9.28934 -9.00578 -8.39545 -8.31496 -8.00013 -5.96642 -3.98412 3.33174 3.40441 3.45061 3.76813 4.17951 4.47624 4.49749 4.52443 4.56228 4.88712 4.95235 5.10264 5.16046 5.23292 5.28118 5.33837 5.36732 5.39244 5.42335 5.45943 5.47813 5.50343 5.59312 5.61478 5.62933 5.72660 5.76484 5.80343 5.81276 5.86650 5.94207 6.00054 6.02273 6.09084 6.12557 6.17390 6.19463 6.36909 6.74722 6.79543 6.98782 7.00911 7.17040 7.41622 7.46027 7.72676 7.87832 8.04283 8.47836 9.09094 9.65396 11.14879 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.030674 B = 0.002535 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.619612 B =11044.307478 C =11616.281797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.070 4.070 3 C -0.144 4.144 4 C -0.140 4.140 5 C -0.105 4.105 6 C 0.053 3.947 7 N -0.541 5.541 8 C 0.057 3.943 9 C 0.055 3.945 10 N -0.541 5.541 11 C 0.057 3.943 12 C -0.104 4.104 13 C 0.021 3.979 14 C -0.516 4.516 15 H 0.055 0.945 16 C 0.055 3.945 17 N -0.897 5.897 18 Si 0.891 3.109 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C 0.056 3.944 23 C 0.060 3.940 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.035 0.965 37 H 0.040 0.960 38 H 0.077 0.923 39 H 0.038 0.962 40 H 0.086 0.914 41 H 0.029 0.971 42 H 0.069 0.931 43 H 0.054 0.946 44 H 0.046 0.954 45 H 0.013 0.987 46 H 0.015 0.985 47 H 0.259 0.741 48 H 0.038 0.962 49 H 0.076 0.924 50 H 0.074 0.926 51 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.046 6.124 22.254 27.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.070 4.070 3 C -0.202 4.202 4 C -0.198 4.198 5 C -0.143 4.143 6 C -0.074 4.074 7 N -0.266 5.266 8 C -0.071 4.071 9 C -0.073 4.073 10 N -0.266 5.266 11 C -0.070 4.070 12 C -0.142 4.142 13 C -0.016 4.016 14 C -0.555 4.555 15 H 0.073 0.927 16 C -0.146 4.146 17 N -0.536 5.536 18 Si 0.719 3.281 19 H -0.197 1.197 20 H -0.211 1.211 21 H -0.210 1.210 22 C -0.072 4.072 23 C -0.068 4.068 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.053 0.947 37 H 0.058 0.942 38 H 0.096 0.904 39 H 0.056 0.944 40 H 0.104 0.896 41 H 0.047 0.953 42 H 0.087 0.913 43 H 0.073 0.927 44 H 0.065 0.935 45 H 0.032 0.968 46 H 0.034 0.966 47 H 0.069 0.931 48 H 0.056 0.944 49 H 0.095 0.905 50 H 0.092 0.908 51 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -15.023 6.023 22.089 27.384 hybrid contribution 0.989 0.128 -0.303 1.042 sum -14.034 6.151 21.786 26.635 Atomic orbital electron populations 1.21926 0.94675 1.01822 1.01574 1.20543 0.95674 0.95576 0.95234 1.21943 1.01049 0.95526 1.01637 1.21858 1.01015 1.00163 0.96749 1.21642 1.00715 0.99665 0.92275 1.22238 1.00025 0.95513 0.89672 1.62168 1.05757 1.56405 1.02293 1.22212 0.87473 0.99259 0.98137 1.22185 0.99674 0.96623 0.88860 1.62240 1.04189 1.57113 1.03032 1.22274 0.98431 0.95399 0.90894 1.21643 0.91557 1.00848 1.00136 1.19081 0.95684 0.95307 0.91567 1.21291 0.95879 1.28129 1.10173 0.92657 1.25035 0.98246 0.95227 0.96095 1.69978 1.36367 1.32175 1.15105 0.86549 0.85354 0.78142 0.78031 1.19742 1.21065 1.21036 1.22122 0.89070 0.98758 0.97293 1.22128 0.98100 0.97250 0.89347 0.92459 0.92595 0.92951 0.92898 0.92679 0.92442 0.92638 0.92670 0.92808 0.91823 0.91176 0.90837 0.94659 0.94166 0.90448 0.94378 0.89609 0.95294 0.91292 0.92713 0.93512 0.96828 0.96632 0.93124 0.94385 0.90518 0.90802 0.94175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.94 8.12 37.16 0.30 -0.64 16 2 C -0.07 -0.49 0.80 -154.51 -0.12 -0.62 16 3 C -0.14 -1.01 8.12 37.16 0.30 -0.71 16 4 C -0.14 -0.93 8.47 37.16 0.31 -0.62 16 5 C -0.11 -0.88 4.20 -26.73 -0.11 -1.00 16 6 C 0.05 0.49 4.25 -3.82 -0.02 0.48 16 7 N -0.54 -6.24 4.71 -234.47 -1.10 -7.34 16 8 C 0.06 0.70 5.41 -3.77 -0.02 0.68 16 9 C 0.05 0.80 5.41 -3.77 -0.02 0.78 16 10 N -0.54 -8.52 4.71 -234.46 -1.10 -9.62 16 11 C 0.06 1.03 4.96 -3.82 -0.02 1.01 16 12 C -0.10 -2.22 5.09 -26.73 -0.14 -2.35 16 13 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 14 C -0.52 -14.93 9.11 -34.44 -0.31 -15.24 16 15 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 16 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 17 N -0.90 -27.38 13.29 55.43 0.74 -26.65 16 18 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 19 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 22 C 0.06 0.75 5.61 -3.77 -0.02 0.73 16 23 C 0.06 0.69 5.61 -3.77 -0.02 0.67 16 24 H 0.06 0.38 6.43 -51.93 -0.33 0.04 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.42 6.43 -51.93 -0.33 0.08 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.57 6.49 -51.93 -0.34 0.23 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.64 6.31 -51.93 -0.33 0.31 16 36 H 0.04 0.34 6.41 -51.93 -0.33 0.00 16 37 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.08 0.86 6.34 -51.93 -0.33 0.53 16 39 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.09 1.32 6.34 -51.93 -0.33 0.99 16 41 H 0.03 0.53 8.12 -51.93 -0.42 0.11 16 42 H 0.07 1.24 8.03 -51.93 -0.42 0.82 16 43 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 44 H 0.05 0.98 6.49 -51.93 -0.34 0.64 16 45 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 48 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 49 H 0.08 0.96 8.07 -51.93 -0.42 0.55 16 50 H 0.07 0.73 8.07 -51.93 -0.42 0.31 16 51 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 LS Contribution 380.87 15.07 5.74 5.74 Total: -1.00 -30.17 380.87 -11.10 -41.27 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: -10.22 Total: -5.47 kcal Atomic # 6 Polarization: -14.77 SS G_CDS: -0.12 Total: -14.89 kcal Atomic # 7 Polarization: -42.14 SS G_CDS: -1.47 Total: -43.61 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -30.17 -11.10 -41.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338728641.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.996 kcal (2) G-P(sol) polarization free energy of solvation -30.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds