Wall clock time and date at job start Tue Mar 31 2020 05:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52999 * 109.46623 * 119.99900 * 2 1 3 5 5 C 1.52997 * 109.47127 * 239.99836 * 2 1 3 6 6 C 1.53002 * 109.46817 * 60.00361 * 5 2 1 7 7 N 1.46909 * 109.46750 * 179.97438 * 6 5 2 8 8 C 1.46947 * 110.99925 * 293.79834 * 7 6 5 9 9 C 1.53052 * 109.36528 * 176.81323 * 8 7 6 10 10 N 1.46956 * 109.36092 * 58.39902 * 9 8 7 11 11 C 1.46909 * 110.99593 * 176.81392 * 10 9 8 12 12 C 1.52995 * 109.47064 * 293.79957 * 11 10 9 13 13 C 1.53005 * 109.47308 * 180.02562 * 12 11 10 14 14 C 1.50698 * 109.47310 * 179.97438 * 13 12 11 15 15 H 1.07995 * 120.00115 * 0.02562 * 14 13 12 16 16 C 1.37878 * 119.99688 * 179.97438 * 14 13 12 17 17 N 1.31510 * 120.00257 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99577 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47618 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.47014 * 120.00481 * 18 16 14 21 21 H 1.48504 * 109.47131 * 239.99818 * 18 16 14 22 22 C 1.46957 * 110.88403 * 300.68027 * 10 9 8 23 23 C 1.46956 * 110.99593 * 169.99816 * 7 6 5 24 24 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 25 25 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 27 27 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 28 28 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 30 30 H 1.09001 * 109.47362 * 60.00551 * 4 2 1 31 31 H 1.09002 * 109.46716 * 179.97438 * 4 2 1 32 32 H 1.09000 * 109.47486 * 299.99829 * 4 2 1 33 33 H 1.09002 * 109.47153 * 180.02562 * 5 2 1 34 34 H 1.08996 * 109.46952 * 300.00302 * 5 2 1 35 35 H 1.09002 * 109.47075 * 299.99262 * 6 5 2 36 36 H 1.08996 * 109.47407 * 60.00219 * 6 5 2 37 37 H 1.09001 * 109.49236 * 296.78126 * 8 7 6 38 38 H 1.08998 * 109.49014 * 56.84415 * 8 7 6 39 39 H 1.09003 * 109.48923 * 298.43466 * 9 8 7 40 40 H 1.08996 * 109.49151 * 178.36490 * 9 8 7 41 41 H 1.08991 * 109.46998 * 53.80324 * 11 10 9 42 42 H 1.09005 * 109.46612 * 173.80382 * 11 10 9 43 43 H 1.09005 * 109.47455 * 299.99940 * 12 11 10 44 44 H 1.08998 * 109.47387 * 60.00101 * 12 11 10 45 45 H 1.09005 * 109.46585 * 300.00193 * 13 12 11 46 46 H 1.08998 * 109.47043 * 59.99610 * 13 12 11 47 47 H 0.97004 * 120.00143 * 179.97438 * 17 16 14 48 48 H 1.08999 * 109.48697 * 299.35495 * 22 10 9 49 49 H 1.08998 * 109.49058 * 179.29153 * 22 10 9 50 50 H 1.08994 * 109.49351 * 303.15450 * 23 7 6 51 51 H 1.09003 * 109.48824 * 63.22111 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 2.0401 -0.7213 -1.2492 6 6 1.5301 0.0001 -2.4984 7 7 2.0203 -0.6922 -3.6979 8 6 3.4817 -0.5843 -3.8079 9 6 3.9595 -1.3830 -5.0229 10 7 3.3037 -0.8680 -6.2330 11 6 3.7939 -1.5603 -7.4325 12 6 5.2698 -1.2207 -7.6498 13 6 5.7802 -1.9412 -8.8994 14 6 7.2338 -1.6062 -9.1139 15 1 7.7428 -0.9460 -8.4274 16 6 7.9141 -2.1436 -10.1860 17 7 7.2944 -2.9481 -11.0217 18 14 9.7160 -1.7290 -10.4514 19 1 10.1758 -0.8102 -9.3792 20 1 10.5217 -2.9760 -10.4132 21 1 9.8834 -1.0719 -11.7726 22 6 1.8422 -0.9759 -6.1230 23 6 1.3645 -0.1772 -4.9080 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6767 1.9563 0.8900 28 1 3.1301 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 -1.7489 1.2493 31 1 3.1300 -0.7217 1.2491 32 1 1.6766 -0.2074 2.1393 33 1 3.1301 -0.7217 -1.2490 34 1 1.6767 -1.7489 -1.2492 35 1 0.4401 0.0000 -2.4985 36 1 1.8935 1.0277 -2.4985 37 1 3.7611 0.4624 -3.9280 38 1 3.9447 -0.9833 -2.9054 39 1 3.7042 -2.4343 -4.8903 40 1 5.0400 -1.2806 -5.1234 41 1 3.6842 -2.6366 -7.3011 42 1 3.2158 -1.2391 -8.2990 43 1 5.3795 -0.1442 -7.7813 44 1 5.8479 -1.5417 -6.7834 45 1 5.6704 -3.0177 -8.7684 46 1 5.2020 -1.6198 -9.7658 47 1 7.7730 -3.3259 -11.7762 48 1 1.5629 -2.0226 -6.0029 49 1 1.3791 -0.5769 -7.0255 50 1 0.2840 -0.2795 -4.8076 51 1 1.6198 0.8741 -5.0406 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338728641.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:25 Heat of formation + Delta-G solvation = -41.987030 kcal Electronic energy + Delta-G solvation = -22725.773791 eV Core-core repulsion = 19657.952077 eV Total energy + Delta-G solvation = -3067.821715 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.52807 -38.87730 -36.91482 -35.40234 -33.33186 -31.91942 -30.69260 -28.52873 -28.12296 -28.10095 -26.45965 -24.78622 -24.09791 -22.84367 -21.63487 -20.72874 -19.41906 -18.51450 -17.36208 -16.57045 -16.51124 -16.09320 -15.83925 -15.66788 -15.57838 -15.41090 -14.97183 -14.77680 -14.41013 -14.26803 -14.05102 -13.67346 -13.38245 -13.20595 -12.99701 -12.77505 -12.74629 -12.60329 -12.51533 -12.48911 -12.37028 -12.24622 -12.04798 -11.84031 -11.79296 -11.44787 -11.38036 -11.37022 -11.31692 -11.13890 -11.00569 -10.55881 -9.38110 -9.20838 -8.20571 -6.31533 1.39590 1.39889 1.53622 2.40561 2.88597 2.95694 3.12427 3.82743 3.88346 3.94262 4.01587 4.02598 4.14099 4.22803 4.29560 4.39303 4.42420 4.51942 4.57939 4.59100 4.66046 4.70462 4.74160 4.81307 4.82721 4.86057 4.89447 4.93886 4.95533 4.98238 5.04844 5.07656 5.09431 5.11885 5.16154 5.20300 5.25527 5.26183 5.44393 5.51506 5.55570 5.56361 5.73420 5.85256 5.99923 6.02591 6.20359 6.21081 6.28315 6.85281 7.37605 8.91627 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.030674 B = 0.002535 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.619612 B =11044.307478 C =11616.281797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.067 4.067 3 C -0.143 4.143 4 C -0.140 4.140 5 C -0.100 4.100 6 C 0.057 3.943 7 N -0.549 5.549 8 C 0.066 3.934 9 C 0.054 3.946 10 N -0.546 5.546 11 C 0.069 3.931 12 C -0.087 4.087 13 C 0.026 3.974 14 C -0.541 4.541 15 H 0.058 0.942 16 C -0.002 4.002 17 N -0.934 5.934 18 Si 0.966 3.034 19 H -0.262 1.262 20 H -0.277 1.277 21 H -0.277 1.277 22 C 0.055 3.945 23 C 0.065 3.935 24 H 0.057 0.943 25 H 0.054 0.946 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.050 0.950 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.062 0.938 35 H 0.083 0.917 36 H 0.036 0.964 37 H 0.034 0.966 38 H 0.090 0.910 39 H 0.031 0.969 40 H 0.074 0.926 41 H 0.022 0.978 42 H 0.069 0.931 43 H 0.050 0.950 44 H 0.049 0.951 45 H -0.011 1.011 46 H -0.008 1.008 47 H 0.264 0.736 48 H 0.034 0.966 49 H 0.084 0.916 50 H 0.096 0.904 51 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.234 7.091 23.692 29.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.068 4.068 3 C -0.200 4.200 4 C -0.197 4.197 5 C -0.138 4.138 6 C -0.070 4.070 7 N -0.274 5.274 8 C -0.062 4.062 9 C -0.074 4.074 10 N -0.271 5.271 11 C -0.059 4.059 12 C -0.125 4.125 13 C -0.012 4.012 14 C -0.579 4.579 15 H 0.077 0.923 16 C -0.200 4.200 17 N -0.574 5.574 18 Si 0.791 3.209 19 H -0.186 1.186 20 H -0.203 1.203 21 H -0.203 1.203 22 C -0.073 4.073 23 C -0.063 4.063 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.102 0.898 36 H 0.054 0.946 37 H 0.052 0.948 38 H 0.108 0.892 39 H 0.049 0.951 40 H 0.093 0.907 41 H 0.040 0.960 42 H 0.088 0.912 43 H 0.069 0.931 44 H 0.067 0.933 45 H 0.008 0.992 46 H 0.011 0.989 47 H 0.072 0.928 48 H 0.052 0.948 49 H 0.103 0.897 50 H 0.114 0.886 51 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -15.227 7.000 23.549 28.903 hybrid contribution 1.001 -0.195 -0.741 1.261 sum -14.226 6.805 22.807 27.728 Atomic orbital electron populations 1.21911 0.94108 1.01874 1.01950 1.20524 0.96091 0.95489 0.94693 1.21929 1.00767 0.95438 1.01887 1.21851 1.00851 1.00194 0.96825 1.21590 1.00250 0.99341 0.92595 1.22266 1.00538 0.95316 0.88884 1.62188 1.05110 1.57024 1.03076 1.22100 0.88327 0.98402 0.97381 1.22197 0.99068 0.96690 0.89423 1.62203 1.05892 1.56592 1.02423 1.21996 0.96300 0.95197 0.92365 1.21376 0.93780 0.99706 0.97665 1.18974 0.94952 0.94236 0.93020 1.21703 0.97149 1.28430 1.10610 0.92337 1.26005 1.03445 0.94877 0.95669 1.70105 1.38531 1.33091 1.15690 0.85381 0.79024 0.78244 0.78290 1.18632 1.20274 1.20259 1.22215 0.87280 0.99004 0.98814 1.22115 0.99262 0.96475 0.88487 0.92401 0.92702 0.92282 0.92176 0.93121 0.92668 0.92688 0.92950 0.92089 0.92475 0.91878 0.89845 0.94624 0.94766 0.89181 0.95058 0.90749 0.95956 0.91237 0.93073 0.93264 0.99226 0.98939 0.92753 0.94803 0.89734 0.88597 0.94547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 8.12 71.98 0.58 -0.99 16 2 C -0.07 -0.84 0.80 -52.18 -0.04 -0.88 16 3 C -0.14 -1.75 8.12 71.98 0.58 -1.17 16 4 C -0.14 -1.64 8.47 71.98 0.61 -1.03 16 5 C -0.10 -1.53 4.20 30.59 0.13 -1.40 16 6 C 0.06 0.95 4.25 86.30 0.37 1.31 16 7 N -0.55 -11.72 4.71 -895.72 -4.22 -15.94 16 8 C 0.07 1.55 5.41 86.31 0.47 2.02 16 9 C 0.05 1.57 5.41 86.31 0.47 2.04 16 10 N -0.55 -16.94 4.71 -895.71 -4.22 -21.15 16 11 C 0.07 2.52 4.96 86.30 0.43 2.95 16 12 C -0.09 -3.79 5.09 30.59 0.16 -3.63 16 13 C 0.03 1.41 4.97 29.85 0.15 1.56 16 14 C -0.54 -31.69 9.11 25.60 0.23 -31.46 16 15 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 16 C 0.00 -0.15 5.46 84.66 0.46 0.32 16 17 N -0.93 -57.87 13.29 21.45 0.28 -57.59 16 18 Si 0.97 45.09 29.54 68.60 2.03 47.11 16 19 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 20 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 21 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 22 C 0.05 1.40 5.61 86.31 0.48 1.88 16 23 C 0.06 1.37 5.61 86.31 0.48 1.85 16 24 H 0.06 0.64 6.43 -2.39 -0.02 0.62 16 25 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 26 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.05 0.70 6.43 -2.39 -0.02 0.68 16 30 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.06 0.95 6.49 -2.39 -0.02 0.93 16 34 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.08 1.25 6.31 -2.39 -0.02 1.23 16 36 H 0.04 0.61 6.41 -2.39 -0.02 0.59 16 37 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.09 1.88 6.34 -2.39 -0.02 1.87 16 39 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.07 2.29 6.34 -2.39 -0.02 2.27 16 41 H 0.02 0.84 8.12 -2.39 -0.02 0.82 16 42 H 0.07 2.51 8.03 -2.38 -0.02 2.49 16 43 H 0.05 2.24 8.14 -2.38 -0.02 2.22 16 44 H 0.05 2.09 6.49 -2.39 -0.02 2.07 16 45 H -0.01 -0.62 8.14 -2.38 -0.02 -0.64 16 46 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 47 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 48 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 49 H 0.08 2.01 8.07 -2.39 -0.02 1.99 16 50 H 0.10 1.63 8.07 -2.39 -0.02 1.61 16 51 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -64.30 380.87 0.27 -64.03 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: 0.84 Total: 10.17 kcal Atomic # 6 Polarization: -32.19 SS G_CDS: 5.56 Total: -26.63 kcal Atomic # 7 Polarization: -86.53 SS G_CDS: -8.15 Total: -94.68 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.11 kcal Total: -64.30 0.27 -64.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338728641.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.039 kcal (2) G-P(sol) polarization free energy of solvation -64.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds