Wall clock time and date at job start Tue Mar 31 2020 05:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47147 * 2 1 4 4 C 1.46506 * 119.99936 * 89.99619 * 3 2 1 5 5 C 1.50703 * 109.46877 * 90.00092 * 4 3 2 6 6 H 1.08005 * 119.99817 * 0.02562 * 5 4 3 7 7 C 1.37871 * 120.00081 * 179.97438 * 5 4 3 8 8 N 1.31520 * 119.99848 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00321 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46855 * 90.00279 * 9 7 5 11 11 H 1.48499 * 109.47326 * 210.00609 * 9 7 5 12 12 H 1.48497 * 109.46885 * 330.00481 * 9 7 5 13 13 C 1.34773 * 120.00036 * 270.27655 * 3 2 1 14 14 O 1.21281 * 120.00220 * 179.72597 * 13 3 2 15 15 C 1.50706 * 120.00080 * 359.72107 * 13 3 2 16 16 N 1.46889 * 109.47109 * 180.02562 * 15 13 3 17 17 C 1.46846 * 111.00053 * 294.20559 * 16 15 13 18 18 C 1.53042 * 109.52374 * 174.16095 * 17 16 15 19 19 C 1.53116 * 109.27706 * 59.18415 * 18 17 16 20 20 C 1.52997 * 109.52438 * 182.43670 * 19 18 17 21 21 C 1.53012 * 109.52403 * 62.24886 * 19 18 17 22 22 C 1.53119 * 109.16321 * 302.34683 * 19 18 17 23 23 C 1.46853 * 111.00065 * 170.00240 * 16 15 13 24 24 H 1.08997 * 109.47273 * 60.00010 * 1 2 3 25 25 H 1.09005 * 109.47395 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47272 * 300.00321 * 1 2 3 27 27 H 1.08994 * 109.47531 * 239.99672 * 2 1 3 28 28 H 1.09005 * 109.46544 * 119.99607 * 2 1 3 29 29 H 1.09000 * 109.46803 * 209.99571 * 4 3 2 30 30 H 1.09000 * 109.47214 * 330.00364 * 4 3 2 31 31 H 0.96998 * 119.99944 * 179.97438 * 8 7 5 32 32 H 1.09004 * 109.46762 * 300.00389 * 15 13 3 33 33 H 1.08998 * 109.46924 * 59.99727 * 15 13 3 34 34 H 1.08995 * 109.46598 * 294.17864 * 17 16 15 35 35 H 1.09007 * 109.46189 * 54.15212 * 17 16 15 36 36 H 1.09001 * 109.50572 * 299.24197 * 18 17 16 37 37 H 1.09000 * 109.53585 * 179.13988 * 18 17 16 38 38 H 1.09006 * 109.47095 * 179.68433 * 20 19 18 39 39 H 1.09006 * 109.47347 * 299.68535 * 20 19 18 40 40 H 1.09003 * 109.46766 * 59.68387 * 20 19 18 41 41 H 1.09000 * 109.46615 * 300.31979 * 21 19 18 42 42 H 1.08999 * 109.46650 * 60.31672 * 21 19 18 43 43 H 1.08993 * 109.47153 * 180.31935 * 21 19 18 44 44 H 1.09001 * 109.49570 * 297.71257 * 22 19 18 45 45 H 1.09000 * 109.53845 * 177.61485 * 22 19 18 46 46 H 1.09003 * 109.45718 * 305.85442 * 23 16 15 47 47 H 1.08996 * 109.46085 * 65.82920 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0718 1.2688 5 6 3.6857 1.8350 1.7039 6 1 4.3428 1.2309 1.0958 7 6 4.1493 2.3905 2.8775 8 7 3.3493 3.1266 3.6176 9 14 5.9133 2.0964 3.4172 10 1 6.7855 3.1610 2.8596 11 1 5.9880 2.1213 4.9001 12 1 6.3686 0.7729 2.9208 13 6 2.2377 2.0184 -1.1671 14 8 2.6372 3.1635 -1.1672 15 6 1.9865 1.3080 -2.4723 16 7 2.2990 2.2100 -3.5888 17 6 1.3721 3.3485 -3.6208 18 6 1.8144 4.3379 -4.7013 19 6 1.8299 3.6302 -6.0590 20 6 2.3296 4.5973 -7.1341 21 6 0.4155 3.1622 -6.4079 22 6 2.7653 2.4202 -5.9844 23 6 2.2955 1.4865 -4.8667 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 2.0955 3.1411 1.1383 30 1 1.5816 1.6877 2.0284 31 1 3.6753 3.5170 4.4435 32 1 2.6203 0.4232 -2.5321 33 1 0.9397 1.0094 -2.5279 34 1 0.3666 2.9921 -3.8444 35 1 1.3738 3.8456 -2.6506 36 1 2.8145 4.7053 -4.4710 37 1 1.1179 5.1757 -4.7356 38 1 2.3455 4.0910 -8.0992 39 1 1.6631 5.4583 -7.1865 40 1 3.3360 4.9318 -6.8824 41 1 0.0602 2.4756 -5.6395 42 1 -0.2496 4.0241 -6.4607 43 1 0.4285 2.6536 -7.3717 44 1 3.7803 2.7575 -5.7743 45 1 2.7484 1.8873 -6.9351 46 1 2.9678 0.6310 -4.8015 47 1 1.2856 1.1390 -5.0845 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339255848.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:44 Heat of formation + Delta-G solvation = -44.139340 kcal Electronic energy + Delta-G solvation = -23595.405533 eV Core-core repulsion = 20391.657393 eV Total energy + Delta-G solvation = -3203.748141 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.94892 -38.61702 -35.43957 -34.77154 -32.74995 -30.78700 -30.07281 -29.48145 -27.44376 -27.24123 -25.30010 -23.14436 -22.98892 -22.45222 -21.36824 -18.31733 -18.24769 -16.54429 -16.25248 -15.85657 -15.19508 -15.10262 -14.78834 -14.47938 -14.22430 -14.08785 -13.83145 -13.40082 -13.26860 -12.84669 -12.43425 -12.41723 -12.01338 -11.99348 -11.93441 -11.85241 -11.67693 -11.45424 -11.30612 -11.14680 -11.04608 -10.88238 -10.69175 -10.55747 -10.48923 -10.21846 -10.12399 -10.05588 -9.56561 -8.76489 -8.39254 -8.00250 -7.57536 -6.00220 -4.04482 3.34416 3.40245 3.41767 3.52048 3.73836 4.27135 4.49611 4.64642 4.73258 4.76971 5.09007 5.23800 5.28625 5.30222 5.34332 5.39545 5.41453 5.45110 5.52967 5.62884 5.64947 5.67268 5.69177 5.71410 5.77081 5.80854 5.85984 5.93741 6.04319 6.05560 6.08729 6.19279 6.24849 6.30264 6.42430 6.48107 6.49425 7.04582 7.25125 7.32053 7.49906 7.62271 7.97071 8.28771 8.50379 8.96153 9.20429 9.60743 11.07823 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021795 B = 0.004114 C = 0.003780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.414163 B = 6804.538116 C = 7405.848495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.107 3.893 3 N -0.600 5.600 4 C 0.248 3.752 5 C -0.524 4.524 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.896 5.896 9 Si 0.897 3.103 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.275 1.275 13 C 0.506 3.494 14 O -0.523 6.523 15 C 0.038 3.962 16 N -0.518 5.518 17 C 0.051 3.949 18 C -0.102 4.102 19 C -0.069 4.069 20 C -0.139 4.139 21 C -0.143 4.143 22 C -0.103 4.103 23 C 0.055 3.945 24 H 0.048 0.952 25 H 0.059 0.941 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.082 0.918 29 H 0.042 0.958 30 H 0.030 0.970 31 H 0.262 0.738 32 H 0.095 0.905 33 H 0.053 0.947 34 H 0.024 0.976 35 H 0.097 0.903 36 H 0.073 0.927 37 H 0.062 0.938 38 H 0.051 0.949 39 H 0.052 0.948 40 H 0.056 0.944 41 H 0.056 0.944 42 H 0.052 0.948 43 H 0.051 0.949 44 H 0.072 0.928 45 H 0.063 0.937 46 H 0.071 0.929 47 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.890 -4.708 -18.595 20.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.017 4.017 3 N -0.333 5.333 4 C 0.129 3.871 5 C -0.563 4.563 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.535 5.535 9 Si 0.725 3.275 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.200 1.200 13 C 0.292 3.708 14 O -0.399 6.399 15 C -0.093 4.093 16 N -0.243 5.243 17 C -0.076 4.076 18 C -0.139 4.139 19 C -0.070 4.070 20 C -0.196 4.196 21 C -0.201 4.201 22 C -0.141 4.141 23 C -0.073 4.073 24 H 0.067 0.933 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.100 0.900 29 H 0.060 0.940 30 H 0.048 0.952 31 H 0.072 0.928 32 H 0.113 0.887 33 H 0.071 0.929 34 H 0.042 0.958 35 H 0.115 0.885 36 H 0.092 0.908 37 H 0.081 0.919 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.071 0.929 43 H 0.070 0.930 44 H 0.091 0.909 45 H 0.081 0.919 46 H 0.090 0.910 47 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -6.210 -3.799 -18.325 19.718 hybrid contribution 0.134 -0.630 0.324 0.721 sum -6.076 -4.430 -18.001 19.508 Atomic orbital electron populations 1.22224 0.96979 1.01303 1.02192 1.21385 0.93335 0.84440 1.02562 1.48265 1.64203 1.13138 1.07725 1.19230 0.96167 0.93577 0.78124 1.21451 0.96952 1.31721 1.06134 0.92485 1.24930 0.97791 0.94975 0.96421 1.69937 1.35594 1.33610 1.14397 0.86508 0.84876 0.78641 0.77449 1.20556 1.21218 1.19952 1.20148 0.78756 0.87157 0.84721 1.90633 1.44760 1.17773 1.86757 1.22046 1.00141 0.96142 0.90996 1.61529 1.52470 1.08749 1.01508 1.22283 0.91930 0.92076 1.01360 1.21600 1.02490 0.97144 0.92701 1.20624 0.95173 0.95565 0.95595 1.21838 1.01154 0.98760 0.97862 1.21961 0.96096 1.01063 1.00941 1.21617 0.99812 0.95553 0.97123 1.22126 0.99431 0.96336 0.89393 0.93299 0.92246 0.92034 0.91937 0.89972 0.93988 0.95180 0.92796 0.88695 0.92910 0.95762 0.88463 0.90826 0.91919 0.93002 0.92841 0.92528 0.92521 0.92862 0.93014 0.90948 0.91866 0.91035 0.95017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.27 10.24 37.16 0.38 -1.89 16 2 C 0.11 1.72 5.93 -4.04 -0.02 1.70 16 3 N -0.60 -12.74 2.46 -175.05 -0.43 -13.17 16 4 C 0.25 6.54 5.17 -5.19 -0.03 6.51 16 5 C -0.52 -15.04 9.39 -34.44 -0.32 -15.36 16 6 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.90 -26.90 13.29 55.43 0.74 -26.17 16 9 Si 0.90 22.18 29.54 -169.99 -5.02 17.16 16 10 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 13 C 0.51 10.65 7.35 -10.98 -0.08 10.57 16 14 O -0.52 -13.25 13.90 5.56 0.08 -13.17 16 15 C 0.04 0.59 4.00 -4.98 -0.02 0.57 16 16 N -0.52 -7.94 4.40 -236.11 -1.04 -8.98 16 17 C 0.05 0.77 4.86 -3.83 -0.02 0.75 16 18 C -0.10 -1.32 4.88 -26.65 -0.13 -1.45 16 19 C -0.07 -0.73 0.77 -154.38 -0.12 -0.85 16 20 C -0.14 -1.28 8.49 37.16 0.32 -0.96 16 21 C -0.14 -1.36 7.90 37.16 0.29 -1.07 16 22 C -0.10 -1.11 4.88 -26.65 -0.13 -1.24 16 23 C 0.06 0.65 5.21 -3.83 -0.02 0.63 16 24 H 0.05 0.63 7.20 -51.93 -0.37 0.26 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 27 H 0.06 0.84 6.45 -51.93 -0.33 0.50 16 28 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16 29 H 0.04 1.25 7.41 -51.93 -0.38 0.87 16 30 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 31 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 32 H 0.09 1.34 7.26 -51.93 -0.38 0.96 16 33 H 0.05 0.72 7.15 -51.93 -0.37 0.35 16 34 H 0.02 0.34 6.51 -51.93 -0.34 0.00 16 35 H 0.10 1.81 5.78 -51.93 -0.30 1.51 16 36 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.06 0.58 4.92 -51.93 -0.26 0.32 16 42 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.07 0.79 8.01 -51.93 -0.42 0.38 16 47 H 0.03 0.35 6.51 -51.93 -0.34 0.01 16 LS Contribution 358.45 15.07 5.40 5.40 Total: -1.00 -32.52 358.45 -8.80 -41.32 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -8.52 Total: -1.96 kcal Atomic # 6 Polarization: -0.43 SS G_CDS: 0.00 Total: -0.43 kcal Atomic # 7 Polarization: -47.59 SS G_CDS: -0.73 Total: -48.32 kcal Atomic # 8 Polarization: -13.25 SS G_CDS: 0.08 Total: -13.17 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.52 -8.80 -41.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339255848.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.817 kcal (2) G-P(sol) polarization free energy of solvation -32.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds