Wall clock time and date at job start Tue Mar 31 2020 05:48:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46908 * 110.99565 * 2 1 4 4 C 1.52998 * 109.46845 * 76.47940 * 3 2 1 5 5 C 1.53008 * 109.46845 * 180.02562 * 4 3 2 6 6 N 1.46902 * 109.46973 * 180.02562 * 5 4 3 7 7 C 1.48530 * 111.00198 * 52.60264 * 6 5 4 8 8 C 1.54937 * 103.22959 * 159.71907 * 7 6 5 9 9 C 1.54600 * 102.91964 * 322.58714 * 8 7 6 10 10 C 1.47906 * 110.99633 * 169.99752 * 6 5 4 11 11 C 1.46899 * 111.00038 * 236.04794 * 2 1 3 12 12 C 1.53002 * 109.46868 * 210.70708 * 11 2 1 13 13 C 1.52997 * 109.47176 * 294.43093 * 12 11 2 14 14 C 1.52999 * 109.46878 * 54.43279 * 12 11 2 15 15 C 1.52999 * 109.46739 * 174.42923 * 12 11 2 16 16 C 1.50703 * 109.46886 * 179.97438 * 15 12 11 17 17 H 1.07997 * 119.99760 * 359.97438 * 16 15 12 18 18 C 1.37879 * 119.99668 * 180.02562 * 16 15 12 19 19 N 1.31508 * 120.00075 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99596 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47298 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47257 * 120.00305 * 20 18 16 23 23 H 1.48506 * 109.47094 * 240.00032 * 20 18 16 24 24 H 1.08998 * 109.47381 * 64.12084 * 1 2 3 25 25 H 1.08996 * 109.46743 * 184.12025 * 1 2 3 26 26 H 1.08997 * 109.47337 * 304.11661 * 1 2 3 27 27 H 1.08996 * 109.47048 * 196.47886 * 3 2 1 28 28 H 1.09002 * 109.46902 * 316.47802 * 3 2 1 29 29 H 1.08996 * 109.47254 * 299.99820 * 4 3 2 30 30 H 1.09002 * 109.47482 * 60.00218 * 4 3 2 31 31 H 1.09005 * 109.46919 * 299.99744 * 5 4 3 32 32 H 1.08996 * 109.47183 * 59.99459 * 5 4 3 33 33 H 1.09000 * 110.66770 * 278.15521 * 7 6 5 34 34 H 1.09001 * 110.67018 * 41.28171 * 7 6 5 35 35 H 1.08997 * 110.72324 * 204.22522 * 8 7 6 36 36 H 1.08994 * 110.71939 * 80.94061 * 8 7 6 37 37 H 1.09000 * 110.30281 * 263.03821 * 9 8 7 38 38 H 1.09001 * 110.30552 * 140.87280 * 9 8 7 39 39 H 1.08996 * 109.91731 * 333.50483 * 10 6 5 40 40 H 1.08998 * 109.91380 * 94.60856 * 10 6 5 41 41 H 1.08997 * 109.46732 * 330.71059 * 11 2 1 42 42 H 1.08998 * 109.47008 * 90.70637 * 11 2 1 43 43 H 1.09002 * 109.47152 * 70.58963 * 13 12 11 44 44 H 1.08997 * 109.47280 * 190.59309 * 13 12 11 45 45 H 1.09002 * 109.47106 * 310.58636 * 13 12 11 46 46 H 1.08997 * 109.47088 * 65.04718 * 14 12 11 47 47 H 1.09003 * 109.46695 * 185.04658 * 14 12 11 48 48 H 1.08993 * 109.46956 * 305.04460 * 14 12 11 49 49 H 1.09000 * 109.47288 * 300.00098 * 15 12 11 50 50 H 1.09006 * 109.46936 * 60.00414 * 15 12 11 51 51 H 0.97004 * 119.99922 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.8633 1.9685 1.4025 5 6 2.4109 3.3972 1.4024 6 7 2.2846 3.9701 2.7492 7 6 2.8938 3.0764 3.7671 8 6 3.1447 4.0244 4.9666 9 6 3.5745 5.3421 4.2817 10 6 3.0144 5.2526 2.8501 11 6 1.9955 -0.7659 -1.1376 12 6 3.3361 -1.3946 -0.7524 13 6 4.3671 -0.2900 -0.5121 14 6 3.1645 -2.2188 0.5252 15 6 3.8172 -2.3038 -1.8851 16 6 5.1380 -2.9225 -1.5059 17 1 5.5893 -2.6902 -0.5527 18 6 5.7706 -3.7844 -2.3766 19 7 5.2217 -4.0661 -3.5379 20 14 7.4075 -4.5519 -1.9063 21 1 7.8080 -4.0764 -0.5577 22 1 7.2745 -6.0309 -1.8910 23 1 8.4416 -4.1582 -2.8968 24 1 -0.3634 0.4485 -0.9246 25 1 -0.3633 -1.0250 0.0738 26 1 -0.3634 0.5764 0.8508 27 1 3.0456 1.3577 -0.2915 28 1 1.4299 1.9777 -0.7077 29 1 0.8131 1.9823 1.6940 30 1 2.4288 1.3623 2.1102 31 1 3.4611 3.3837 1.1107 32 1 1.8451 4.0031 0.6947 33 1 2.2021 2.2807 4.0438 34 1 3.8331 2.6612 3.4019 35 1 3.9439 3.6408 5.6008 36 1 2.2302 4.1691 5.5417 37 1 4.6615 5.4193 4.2585 38 1 3.1448 6.1973 4.8034 39 1 3.8320 5.2723 2.1295 40 1 2.3337 6.0829 2.6620 41 1 1.2889 -1.5518 -1.4046 42 1 2.1375 -0.1005 -1.9891 43 1 4.1227 0.2413 0.4077 44 1 5.3595 -0.7322 -0.4237 45 1 4.3538 0.4078 -1.3494 46 1 2.4987 -3.0591 0.3287 47 1 4.1357 -2.5928 0.8494 48 1 2.7371 -1.5916 1.3074 49 1 3.0826 -3.0907 -2.0562 50 1 3.9394 -1.7165 -2.7953 51 1 5.6670 -4.6722 -4.1506 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343601028.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:03 Heat of formation + Delta-G solvation = -9.696930 kcal Electronic energy + Delta-G solvation = -23380.626740 eV Core-core repulsion = 20314.205229 eV Total energy + Delta-G solvation = -3066.421511 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.26304 -38.30306 -35.32780 -33.49323 -32.14581 -30.17099 -29.02463 -27.39450 -26.50442 -26.24380 -25.45305 -23.47703 -22.33359 -21.19426 -20.82052 -20.17200 -17.85784 -16.31615 -16.20998 -16.11216 -15.62176 -14.74627 -14.68338 -14.45275 -14.21129 -13.94856 -13.17031 -13.14233 -12.94716 -12.67090 -12.58981 -12.35349 -12.05922 -11.94058 -11.77732 -11.61503 -11.46069 -11.35297 -11.14712 -11.02593 -10.84630 -10.78238 -10.72310 -10.66424 -10.48910 -10.28368 -10.27674 -9.91245 -9.57245 -8.92364 -8.80638 -8.58519 -8.29494 -7.90098 -5.93963 -3.93562 3.33591 3.41432 3.45080 3.77249 4.24218 4.46168 4.49766 4.53226 4.73497 5.02293 5.09162 5.15955 5.29634 5.31303 5.39682 5.42184 5.48115 5.54895 5.56291 5.61492 5.62159 5.67799 5.73464 5.76402 5.83006 5.91395 5.95878 5.97628 6.06253 6.08272 6.20985 6.27898 6.35415 6.39337 6.59820 6.72380 6.76704 6.84916 6.88595 6.91539 7.27578 7.30157 7.32361 7.45726 7.54740 7.74580 7.90275 8.07022 8.52247 9.12230 9.69036 11.17822 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.019642 B = 0.003421 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.163519 B = 8183.775237 C = 9053.103176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.534 5.534 3 C 0.041 3.959 4 C -0.110 4.110 5 C 0.047 3.953 6 N -0.519 5.519 7 C 0.033 3.967 8 C -0.125 4.125 9 C -0.131 4.131 10 C 0.034 3.966 11 C 0.065 3.935 12 C -0.052 4.052 13 C -0.131 4.131 14 C -0.113 4.113 15 C 0.032 3.968 16 C -0.504 4.504 17 H 0.060 0.940 18 C 0.053 3.947 19 N -0.898 5.898 20 Si 0.886 3.114 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.286 1.286 24 H 0.018 0.982 25 H 0.065 0.935 26 H 0.062 0.938 27 H 0.091 0.909 28 H 0.027 0.973 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.036 0.964 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.047 0.953 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.065 0.935 38 H 0.070 0.930 39 H 0.044 0.956 40 H 0.076 0.924 41 H 0.064 0.936 42 H 0.032 0.968 43 H 0.041 0.959 44 H 0.064 0.936 45 H 0.035 0.965 46 H 0.036 0.964 47 H 0.049 0.951 48 H 0.047 0.953 49 H 0.014 0.986 50 H 0.011 0.989 51 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.973 16.810 12.887 22.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.257 5.257 3 C -0.088 4.088 4 C -0.148 4.148 5 C -0.081 4.081 6 N -0.243 5.243 7 C -0.094 4.094 8 C -0.163 4.163 9 C -0.170 4.170 10 C -0.094 4.094 11 C -0.062 4.062 12 C -0.052 4.052 13 C -0.188 4.188 14 C -0.171 4.171 15 C -0.005 4.005 16 C -0.542 4.542 17 H 0.078 0.922 18 C -0.147 4.147 19 N -0.538 5.538 20 Si 0.715 3.285 21 H -0.198 1.198 22 H -0.212 1.212 23 H -0.212 1.212 24 H 0.036 0.964 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.109 0.891 28 H 0.045 0.955 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.055 0.945 32 H 0.091 0.909 33 H 0.103 0.897 34 H 0.066 0.934 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.062 0.938 40 H 0.094 0.906 41 H 0.082 0.918 42 H 0.050 0.950 43 H 0.060 0.940 44 H 0.083 0.917 45 H 0.054 0.946 46 H 0.056 0.944 47 H 0.068 0.932 48 H 0.066 0.934 49 H 0.032 0.968 50 H 0.030 0.970 51 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -7.355 16.552 13.235 22.432 hybrid contribution 1.460 -0.218 -1.000 1.783 sum -5.894 16.334 12.235 21.242 Atomic orbital electron populations 1.22418 0.88527 1.01746 0.99629 1.61934 1.06573 1.12727 1.44514 1.22463 1.01860 0.88671 0.95795 1.21578 1.01839 0.93625 0.97796 1.22296 0.99433 0.96167 0.90245 1.64811 1.51805 1.03019 1.04652 1.23254 0.98266 0.96061 0.91859 1.22494 1.01533 0.94927 0.97375 1.22396 1.00540 0.98521 0.95502 1.22871 0.96592 0.93383 0.96568 1.22335 0.97926 0.96049 0.89928 1.20556 0.91523 0.95354 0.97786 1.21941 1.00567 0.97621 0.98635 1.21559 1.00551 0.98281 0.96686 1.19149 0.95921 0.93430 0.92039 1.21282 1.04895 1.25601 1.02422 0.92237 1.25019 0.97598 0.96908 0.95142 1.69978 1.38903 1.36346 1.08610 0.86622 0.84331 0.79109 0.78460 1.19774 1.21171 1.21229 0.96365 0.91665 0.91932 0.89093 0.95514 0.91575 0.91035 0.94547 0.90944 0.89740 0.93426 0.91107 0.90855 0.91589 0.91161 0.93792 0.90560 0.91785 0.95007 0.94012 0.91745 0.94631 0.94450 0.93191 0.93446 0.96788 0.97039 0.93269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.24 60.07 0.56 0.88 16 2 N -0.53 -7.96 3.43 -242.91 -0.83 -8.79 16 3 C 0.04 0.54 4.12 -3.82 -0.02 0.53 16 4 C -0.11 -1.29 4.99 -26.73 -0.13 -1.42 16 5 C 0.05 0.51 5.03 -3.82 -0.02 0.49 16 6 N -0.52 -5.44 5.40 -230.45 -1.24 -6.69 16 7 C 0.03 0.33 5.10 -1.90 -0.01 0.32 16 8 C -0.13 -1.02 7.06 -24.87 -0.18 -1.19 16 9 C -0.13 -1.01 6.93 -25.37 -0.18 -1.19 16 10 C 0.03 0.31 6.70 -2.75 -0.02 0.29 16 11 C 0.06 1.14 4.23 -3.82 -0.02 1.13 16 12 C -0.05 -1.04 0.61 -154.51 -0.09 -1.14 16 13 C -0.13 -2.48 6.81 37.16 0.25 -2.23 16 14 C -0.11 -2.24 7.97 37.16 0.30 -1.94 16 15 C 0.03 0.82 4.04 -27.88 -0.11 0.70 16 16 C -0.50 -13.87 7.56 -34.44 -0.26 -14.13 16 17 H 0.06 1.60 5.75 -52.49 -0.30 1.30 16 18 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 19 N -0.90 -27.04 13.29 55.43 0.74 -26.30 16 20 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 21 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 25 H 0.06 0.83 8.06 -51.93 -0.42 0.41 16 26 H 0.06 0.72 6.80 -51.93 -0.35 0.37 16 27 H 0.09 1.32 4.28 -51.93 -0.22 1.10 16 28 H 0.03 0.35 7.99 -51.93 -0.41 -0.07 16 29 H 0.07 0.79 6.90 -51.93 -0.36 0.43 16 30 H 0.07 0.91 6.79 -51.93 -0.35 0.55 16 31 H 0.04 0.41 7.81 -51.93 -0.41 0.00 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.08 0.85 7.66 -51.93 -0.40 0.45 16 34 H 0.05 0.50 8.00 -51.93 -0.42 0.08 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.04 0.40 7.57 -51.93 -0.39 0.00 16 40 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.06 1.15 7.72 -51.93 -0.40 0.75 16 42 H 0.03 0.57 7.79 -51.93 -0.40 0.16 16 43 H 0.04 0.70 6.39 -51.93 -0.33 0.37 16 44 H 0.06 1.35 6.34 -51.93 -0.33 1.02 16 45 H 0.03 0.65 7.54 -51.93 -0.39 0.26 16 46 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.05 1.04 6.80 -51.93 -0.35 0.69 16 48 H 0.05 0.85 7.28 -51.93 -0.38 0.47 16 49 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 50 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 51 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 376.02 15.07 5.67 5.67 Total: -1.00 -29.23 376.02 -10.70 -39.94 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -9.99 Total: -3.04 kcal Atomic # 6 Polarization: -17.46 SS G_CDS: -0.02 Total: -17.48 kcal Atomic # 7 Polarization: -40.44 SS G_CDS: -1.34 Total: -41.78 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -29.23 -10.70 -39.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343601028.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.240 kcal (2) G-P(sol) polarization free energy of solvation -29.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds