Wall clock time and date at job start Tue Mar 31 2020 05:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46497 * 120.00319 * 2 1 4 4 C 1.52997 * 109.47480 * 270.00648 * 3 2 1 5 5 C 1.53002 * 109.47469 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.46817 * 64.99892 * 5 4 3 7 7 C 1.52999 * 109.47317 * 179.97438 * 6 5 4 8 8 C 1.53005 * 109.47159 * 300.00546 * 7 6 5 9 9 C 1.52997 * 109.47452 * 59.99536 * 8 7 6 10 10 C 1.53000 * 109.47233 * 184.99697 * 5 4 3 11 11 C 1.34778 * 119.99970 * 180.02562 * 2 1 3 12 12 O 1.21585 * 119.99772 * 179.97438 * 11 2 1 13 13 N 1.34775 * 119.99884 * 359.97438 * 11 2 1 14 14 C 1.46499 * 119.99939 * 180.02562 * 13 11 2 15 15 C 1.52997 * 109.47105 * 180.02562 * 14 13 11 16 16 C 1.50703 * 109.47184 * 179.97438 * 15 14 13 17 17 H 1.08000 * 120.00090 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00194 * 179.97438 * 16 15 14 19 19 N 1.31513 * 119.99661 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00164 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.46784 * 90.00581 * 20 18 16 22 22 H 1.48492 * 109.47108 * 210.00407 * 20 18 16 23 23 H 1.48499 * 109.47029 * 330.00802 * 20 18 16 24 24 H 1.08993 * 109.47683 * 89.99506 * 1 2 3 25 25 H 1.09000 * 109.47216 * 209.99980 * 1 2 3 26 26 H 1.09000 * 109.46422 * 329.99283 * 1 2 3 27 27 H 1.08997 * 109.47622 * 150.00088 * 3 2 1 28 28 H 1.09006 * 109.47216 * 30.00676 * 3 2 1 29 29 H 1.09008 * 109.47149 * 59.99636 * 4 3 2 30 30 H 1.08997 * 109.47163 * 299.99707 * 4 3 2 31 31 H 1.09002 * 109.47070 * 305.00072 * 5 4 3 32 32 H 1.08996 * 109.47853 * 300.00202 * 6 5 4 33 33 H 1.09002 * 109.47153 * 60.00231 * 6 5 4 34 34 H 1.09000 * 109.47486 * 180.02562 * 7 6 5 35 35 H 1.09002 * 109.46716 * 60.00091 * 7 6 5 36 36 H 1.09002 * 109.46935 * 299.99411 * 8 7 6 37 37 H 1.09001 * 109.46812 * 179.97438 * 8 7 6 38 38 H 1.08993 * 109.47194 * 179.97438 * 9 8 7 39 39 H 1.09002 * 109.46695 * 59.99734 * 9 8 7 40 40 H 1.08992 * 109.47399 * 300.00166 * 10 5 4 41 41 H 1.09004 * 109.46724 * 60.00652 * 10 5 4 42 42 H 0.96991 * 120.00091 * 359.97438 * 13 11 2 43 43 H 1.09003 * 109.46941 * 299.99857 * 14 13 11 44 44 H 1.08996 * 109.47780 * 59.99559 * 14 13 11 45 45 H 1.09006 * 109.46902 * 299.99211 * 15 14 13 46 46 H 1.08998 * 109.47322 * 59.99681 * 15 14 13 47 47 H 0.97010 * 119.99717 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7105 -1.4424 5 6 3.2170 3.0358 -1.4424 6 6 4.6042 2.8242 -0.8327 7 6 5.3690 4.1493 -0.8333 8 6 5.5150 4.6534 -2.2705 9 6 4.1278 4.8649 -2.8802 10 6 3.3630 3.5403 -2.8794 11 6 2.1389 -1.1672 -0.0005 12 8 3.3547 -1.1672 -0.0010 13 7 1.4650 -2.3344 -0.0005 14 6 2.1974 -3.6031 -0.0005 15 6 1.2032 -4.7660 -0.0012 16 6 1.9567 -6.0711 -0.0018 17 1 3.0367 -6.0712 -0.0022 18 6 1.2673 -7.2652 -0.0019 19 7 -0.0478 -7.2651 -0.0020 20 14 2.2013 -8.8830 -0.0034 21 1 2.4496 -9.3124 1.3963 22 1 1.3983 -9.9174 -0.7035 23 1 3.4984 -8.7050 -0.7041 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3632 0.8900 0.5140 27 1 3.1499 1.1384 0.5138 28 1 1.6085 2.0284 0.5140 29 1 1.5000 1.8409 -1.9563 30 1 3.0415 0.9509 -1.9564 31 1 2.6693 3.7712 -0.8530 32 1 4.5003 2.4647 0.1910 33 1 5.1518 2.0889 -1.4222 34 1 6.3575 3.9985 -0.3993 35 1 4.8215 4.8850 -0.2441 36 1 6.0625 3.9177 -2.8597 37 1 6.0595 5.5977 -2.2708 38 1 4.2318 5.2245 -3.9039 39 1 3.5803 5.6006 -2.2909 40 1 3.9107 2.8050 -3.4688 41 1 2.3747 3.6911 -3.3138 42 1 0.4950 -2.3344 0.0002 43 1 2.8241 -3.6608 -0.8905 44 1 2.8242 -3.6609 0.8894 45 1 0.5763 -4.7085 0.8887 46 1 0.5768 -4.7080 -0.8913 47 1 -0.5329 -8.1052 -0.0024 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343995418.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:20 Heat of formation + Delta-G solvation = -70.133431 kcal Electronic energy + Delta-G solvation = -22283.986022 eV Core-core repulsion = 19079.110693 eV Total energy + Delta-G solvation = -3204.875329 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.90645 -38.85262 -35.80992 -34.74428 -33.30506 -32.57775 -30.96002 -29.68546 -28.33856 -26.43806 -24.82935 -23.51205 -22.64595 -21.15881 -20.80047 -19.90115 -19.49305 -17.72079 -16.48308 -16.06839 -15.50174 -15.37339 -14.88561 -14.49309 -14.39525 -14.19524 -13.89268 -13.80179 -13.53334 -13.21085 -12.71803 -12.67076 -12.46474 -12.27492 -12.26179 -12.01589 -11.77349 -11.29241 -11.24482 -11.13019 -11.01498 -10.80846 -10.61253 -10.59796 -10.32037 -10.25859 -10.10158 -9.83082 -9.51034 -9.23458 -8.65930 -8.43573 -8.14343 -6.07498 -4.09885 2.98680 3.30966 3.36965 3.41716 3.61626 4.32027 4.46003 4.50381 4.51061 4.58903 4.90976 4.95814 5.06596 5.14519 5.23407 5.25617 5.29634 5.30293 5.34594 5.38310 5.46903 5.52868 5.61914 5.65401 5.75089 5.79770 5.85514 5.96648 5.99046 6.00114 6.10606 6.15225 6.24637 6.32301 6.39383 6.43363 6.70267 6.80668 7.05414 7.22017 7.58339 7.65705 7.91891 8.27756 8.42566 8.95048 9.04181 9.54712 11.04218 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.031213 B = 0.002615 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.856124 B =10706.330701 C =11145.310202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.640 5.640 3 C 0.134 3.866 4 C -0.131 4.131 5 C -0.081 4.081 6 C -0.117 4.117 7 C -0.119 4.119 8 C -0.121 4.121 9 C -0.118 4.118 10 C -0.114 4.114 11 C 0.699 3.301 12 O -0.595 6.595 13 N -0.739 5.739 14 C 0.139 3.861 15 C 0.013 3.987 16 C -0.520 4.520 17 H 0.060 0.940 18 C 0.058 3.942 19 N -0.895 5.895 20 Si 0.897 3.103 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.272 1.272 24 H 0.052 0.948 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.084 0.916 28 H 0.069 0.931 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.057 0.943 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.062 0.938 41 H 0.059 0.941 42 H 0.393 0.607 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.021 0.979 46 H 0.022 0.978 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.540 25.026 -2.791 25.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.379 5.379 3 C 0.011 3.989 4 C -0.170 4.170 5 C -0.100 4.100 6 C -0.155 4.155 7 C -0.157 4.157 8 C -0.158 4.158 9 C -0.156 4.156 10 C -0.152 4.152 11 C 0.400 3.600 12 O -0.474 6.474 13 N -0.394 5.394 14 C 0.016 3.984 15 C -0.024 4.024 16 C -0.558 4.558 17 H 0.078 0.922 18 C -0.143 4.143 19 N -0.534 5.534 20 Si 0.725 3.275 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.197 1.197 24 H 0.071 0.929 25 H 0.087 0.913 26 H 0.088 0.912 27 H 0.103 0.897 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.227 0.773 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.040 0.960 46 H 0.040 0.960 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.286 24.856 -2.785 25.227 hybrid contribution -0.243 -0.956 -0.048 0.988 sum 3.042 23.900 -2.834 24.259 Atomic orbital electron populations 1.21688 0.80244 1.02811 1.01548 1.47063 1.06099 1.05207 1.79498 1.21344 0.97525 0.83389 0.96642 1.22029 1.00240 0.97002 0.97731 1.21084 0.96075 0.96506 0.96364 1.21647 0.95392 0.97082 1.01357 1.21541 1.00200 0.97416 0.96534 1.21546 0.96976 1.00751 0.96534 1.21514 0.96133 0.97505 1.00442 1.21568 1.00070 0.96946 0.96589 1.16014 0.85442 0.80469 0.78030 1.90871 1.11639 1.86329 1.58527 1.45685 1.09944 1.05369 1.78399 1.21579 0.95648 0.80537 1.00589 1.19320 0.94259 0.91122 0.97731 1.21057 0.93273 0.90360 1.51142 0.92222 1.24998 0.94901 0.99402 0.95043 1.69961 1.06083 1.26815 1.50532 0.86508 0.79847 0.82993 0.78186 1.20567 1.21194 1.19719 0.92943 0.91286 0.91231 0.89739 0.91261 0.92133 0.91271 0.91377 0.91588 0.91700 0.92168 0.92231 0.92031 0.92411 0.92302 0.92190 0.91929 0.92179 0.77256 0.92841 0.92847 0.96042 0.96016 0.92889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.82 10.25 59.85 0.61 1.44 16 2 N -0.64 -8.84 2.87 -187.36 -0.54 -9.38 16 3 C 0.13 1.57 5.20 -4.04 -0.02 1.55 16 4 C -0.13 -1.41 5.01 -26.73 -0.13 -1.55 16 5 C -0.08 -0.72 2.19 -90.62 -0.20 -0.92 16 6 C -0.12 -1.13 4.96 -26.73 -0.13 -1.26 16 7 C -0.12 -0.97 5.92 -26.73 -0.16 -1.13 16 8 C -0.12 -0.92 5.92 -26.73 -0.16 -1.08 16 9 C -0.12 -0.88 5.92 -26.76 -0.16 -1.03 16 10 C -0.11 -0.96 5.20 -26.76 -0.14 -1.10 16 11 C 0.70 12.89 8.28 -86.92 -0.72 12.17 16 12 O -0.59 -13.10 15.92 5.29 0.08 -13.01 16 13 N -0.74 -13.77 5.42 -65.23 -0.35 -14.13 16 14 C 0.14 3.09 5.61 -4.04 -0.02 3.07 16 15 C 0.01 0.33 5.09 -27.88 -0.14 0.19 16 16 C -0.52 -14.60 9.11 -34.44 -0.31 -14.92 16 17 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 19 N -0.89 -26.31 13.29 55.43 0.74 -25.58 16 20 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 24 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.07 0.71 6.36 -51.93 -0.33 0.38 16 26 H 0.07 0.54 7.89 -51.93 -0.41 0.13 16 27 H 0.08 1.14 5.84 -51.93 -0.30 0.84 16 28 H 0.07 0.63 7.89 -51.93 -0.41 0.22 16 29 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 30 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.67 6.57 -51.93 -0.34 0.33 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.39 6.40 6.20 -40.82 -0.25 6.14 16 43 H 0.05 1.24 8.14 -51.93 -0.42 0.81 16 44 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 45 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 47 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 367.71 15.07 5.54 5.54 Total: -1.00 -31.98 367.71 -10.11 -42.09 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -8.78 Total: 0.94 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: -1.78 Total: -3.02 kcal Atomic # 7 Polarization: -48.93 SS G_CDS: -0.16 Total: -49.08 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: 0.08 Total: -13.01 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.98 -10.11 -42.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343995418.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.045 kcal (2) G-P(sol) polarization free energy of solvation -31.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds