Wall clock time and date at job start Tue Mar 31 2020 05:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46624 * 2 1 4 4 N 1.46900 * 109.46847 * 181.10070 * 3 2 1 5 5 C 1.46899 * 111.00556 * 60.09396 * 4 3 2 6 6 C 1.53006 * 109.46680 * 66.04554 * 5 4 3 7 7 C 1.50700 * 109.46656 * 180.02562 * 6 5 4 8 8 H 1.08003 * 120.00618 * 359.97438 * 7 6 5 9 9 C 1.37878 * 119.99895 * 180.02562 * 7 6 5 10 10 N 1.31518 * 119.99666 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 120.00340 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47069 * 89.99486 * 11 9 7 13 13 H 1.48498 * 109.47350 * 209.99720 * 11 9 7 14 14 H 1.48501 * 109.46989 * 329.99764 * 11 9 7 15 15 C 1.46904 * 111.00022 * 296.14083 * 4 3 2 16 16 C 1.53004 * 109.47028 * 288.29544 * 15 4 3 17 17 N 1.46899 * 109.46909 * 185.32470 * 16 15 4 18 18 C 1.48004 * 111.00167 * 298.71959 * 17 16 15 19 19 C 1.50448 * 112.82252 * 191.34662 * 18 17 16 20 20 C 1.54316 * 108.50173 * 93.73364 * 19 18 17 21 21 C 1.45878 * 112.17850 * 281.45982 * 20 19 18 22 22 C 1.54312 * 112.18803 * 61.12248 * 21 20 19 23 23 C 1.48001 * 111.00062 * 170.00226 * 17 16 15 24 24 H 1.09004 * 109.47307 * 299.99915 * 1 2 3 25 25 H 1.08998 * 109.47581 * 59.99883 * 1 2 3 26 26 H 1.08999 * 109.47096 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46808 * 240.00023 * 2 1 3 28 28 H 1.08998 * 109.46987 * 119.99643 * 2 1 3 29 29 H 1.08995 * 109.47488 * 61.10163 * 3 2 1 30 30 H 1.09001 * 109.47702 * 301.09468 * 3 2 1 31 31 H 1.08999 * 109.47231 * 186.04962 * 5 4 3 32 32 H 1.09001 * 109.46948 * 306.04895 * 5 4 3 33 33 H 1.08997 * 109.47128 * 300.00009 * 6 5 4 34 34 H 1.08994 * 109.46737 * 60.00481 * 6 5 4 35 35 H 0.96998 * 119.99742 * 180.02562 * 10 9 7 36 36 H 1.09002 * 109.47216 * 48.29298 * 15 4 3 37 37 H 1.08998 * 109.47705 * 168.29686 * 15 4 3 38 38 H 1.08995 * 109.47472 * 305.32662 * 16 15 4 39 39 H 1.09008 * 109.46964 * 65.33049 * 16 15 4 40 40 H 1.08997 * 108.81429 * 312.20964 * 18 17 16 41 41 H 1.08996 * 108.81126 * 70.48740 * 18 17 16 42 42 H 1.08998 * 109.63958 * 334.02381 * 19 18 17 43 43 H 1.09006 * 109.62879 * 213.42925 * 19 18 17 44 44 H 1.08998 * 108.94055 * 160.76242 * 20 19 18 45 45 H 1.08998 * 108.86670 * 42.10251 * 20 19 18 46 46 H 1.09003 * 108.93804 * 300.42273 * 21 20 19 47 47 H 1.09000 * 108.93526 * 181.81889 * 21 20 19 48 48 H 1.08999 * 109.63367 * 161.76149 * 22 21 20 49 49 H 1.08998 * 109.63230 * 41.15787 * 22 21 20 50 50 H 1.08999 * 108.81644 * 205.70205 * 23 17 16 51 51 H 1.09001 * 108.81026 * 324.08656 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5087 1.4427 -0.0266 5 6 4.0136 0.7666 -1.2291 6 6 3.6270 1.5753 -2.4690 7 6 4.1445 0.8815 -3.7027 8 1 4.6945 -0.0436 -3.6115 9 6 3.9167 1.4281 -4.9478 10 7 3.2474 2.5548 -5.0589 11 14 4.5587 0.5685 -6.4769 12 1 3.5323 -0.3798 -6.9794 13 1 4.8551 1.5781 -7.5248 14 1 5.7990 -0.1763 -6.1421 15 6 4.0573 0.8306 1.1909 16 6 3.8387 1.7713 2.3777 17 7 4.4982 1.2188 3.5684 18 6 3.9270 -0.0983 3.9280 19 6 4.3729 -0.5776 5.2826 20 6 3.3194 -0.1481 6.3253 21 6 3.4486 1.2580 6.6916 22 6 3.2483 2.1960 5.4828 23 6 4.5152 2.2056 4.6712 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6928 1.9506 0.8996 30 1 1.6606 1.9620 -0.8800 31 1 5.0991 0.6858 -1.1717 32 1 3.5781 -0.2304 -1.2952 33 1 2.5415 1.6560 -2.5263 34 1 4.0625 2.5723 -2.4028 35 1 3.0869 2.9391 -5.9348 36 1 3.5527 -0.1168 1.3805 37 1 5.1248 0.6537 1.0595 38 1 4.2619 2.7493 2.1489 39 1 2.7703 1.8732 2.5685 40 1 2.8396 -0.0233 3.9222 41 1 4.2307 -0.8295 3.1790 42 1 5.3362 -0.1316 5.5302 43 1 4.4599 -1.6641 5.2762 44 1 3.4377 -0.7591 7.2201 45 1 2.3251 -0.3159 5.9115 46 1 4.4419 1.4252 7.1084 47 1 2.7036 1.4956 7.4510 48 1 3.0307 3.2046 5.8339 49 1 2.4236 1.8324 4.8698 50 1 5.3555 1.9835 5.3289 51 1 4.6530 3.2014 4.2498 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344031020.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:01 Heat of formation + Delta-G solvation = -15.067680 kcal Electronic energy + Delta-G solvation = -23465.715625 eV Core-core repulsion = 20399.061221 eV Total energy + Delta-G solvation = -3066.654404 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.61191 -37.97154 -34.82240 -33.22379 -32.40048 -32.24702 -30.29565 -28.25177 -26.12845 -25.42476 -25.00033 -23.45311 -22.34853 -21.07291 -20.67053 -19.48135 -18.88371 -16.70164 -16.24663 -16.02447 -15.29830 -15.19451 -14.78319 -14.45787 -14.31692 -13.93431 -13.61804 -13.44064 -13.21597 -13.13984 -12.56259 -12.49660 -12.36216 -12.13351 -11.90470 -11.49010 -11.28555 -11.25753 -11.13587 -11.04238 -10.97954 -10.91068 -10.78686 -10.72884 -10.64201 -10.47470 -10.40521 -10.18844 -9.64696 -9.29205 -9.07367 -8.28966 -8.18389 -7.55306 -5.96001 -3.97912 3.34040 3.40336 3.43783 3.73404 4.42438 4.44691 4.50877 4.68684 4.76205 4.91238 5.02604 5.18248 5.20004 5.28224 5.29151 5.34820 5.39298 5.40583 5.46836 5.55361 5.64356 5.66027 5.70948 5.76222 5.83641 5.84886 5.86049 5.90851 6.01570 6.03457 6.07363 6.12087 6.15858 6.19708 6.23712 6.30429 6.39074 6.40815 6.68090 6.74820 7.05043 7.10758 7.15312 7.58465 7.66261 7.85834 7.96667 8.13902 8.48491 9.09623 9.65429 11.15382 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.026877 B = 0.003183 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.535534 B = 8795.737955 C = 9091.527453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.164 4.164 3 C 0.055 3.945 4 N -0.536 5.536 5 C 0.061 3.939 6 C 0.030 3.970 7 C -0.520 4.520 8 H 0.053 0.947 9 C 0.058 3.942 10 N -0.893 5.893 11 Si 0.890 3.110 12 H -0.282 1.282 13 H -0.286 1.286 14 H -0.274 1.274 15 C 0.054 3.946 16 C 0.067 3.933 17 N -0.549 5.549 18 C 0.062 3.938 19 C -0.121 4.121 20 C -0.121 4.121 21 C -0.116 4.116 22 C -0.150 4.150 23 C 0.061 3.939 24 H 0.047 0.953 25 H 0.057 0.943 26 H 0.047 0.953 27 H 0.073 0.927 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.084 0.916 31 H 0.058 0.942 32 H 0.025 0.975 33 H 0.017 0.983 34 H 0.023 0.977 35 H 0.260 0.740 36 H 0.031 0.969 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.028 0.972 40 H 0.031 0.969 41 H 0.071 0.929 42 H 0.075 0.925 43 H 0.068 0.932 44 H 0.058 0.942 45 H 0.057 0.943 46 H 0.061 0.939 47 H 0.056 0.944 48 H 0.067 0.933 49 H 0.063 0.937 50 H 0.071 0.929 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.815 -3.796 22.822 23.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.203 4.203 3 C -0.073 4.073 4 N -0.259 5.259 5 C -0.066 4.066 6 C -0.008 4.008 7 C -0.559 4.559 8 H 0.071 0.929 9 C -0.143 4.143 10 N -0.533 5.533 11 Si 0.718 3.282 12 H -0.208 1.208 13 H -0.212 1.212 14 H -0.199 1.199 15 C -0.075 4.075 16 C -0.061 4.061 17 N -0.274 5.274 18 C -0.065 4.065 19 C -0.159 4.159 20 C -0.159 4.159 21 C -0.154 4.154 22 C -0.189 4.189 23 C -0.067 4.067 24 H 0.066 0.934 25 H 0.076 0.924 26 H 0.066 0.934 27 H 0.091 0.909 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.102 0.898 31 H 0.077 0.923 32 H 0.043 0.957 33 H 0.035 0.965 34 H 0.041 0.959 35 H 0.069 0.931 36 H 0.049 0.951 37 H 0.094 0.906 38 H 0.100 0.900 39 H 0.046 0.954 40 H 0.049 0.951 41 H 0.089 0.911 42 H 0.093 0.907 43 H 0.087 0.913 44 H 0.077 0.923 45 H 0.076 0.924 46 H 0.080 0.920 47 H 0.074 0.926 48 H 0.085 0.915 49 H 0.082 0.918 50 H 0.090 0.910 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.232 -3.256 22.567 22.834 hybrid contribution -0.884 -1.156 -0.683 1.608 sum -2.116 -4.413 21.884 22.424 Atomic orbital electron populations 1.21652 0.95970 1.01011 1.01560 1.22171 0.96168 0.99969 1.02002 1.22228 0.88027 0.94851 1.02203 1.62222 1.06721 1.54879 1.02074 1.22380 0.98528 0.95879 0.89781 1.19069 0.96774 0.95583 0.89361 1.21206 1.35145 1.08200 0.91365 0.92882 1.24984 0.95340 0.94960 0.99013 1.69974 1.40696 1.18857 1.23738 0.86621 0.79261 0.79287 0.82987 1.20778 1.21229 1.19893 1.22101 1.00430 0.94973 0.89976 1.22084 0.96139 0.98970 0.88905 1.61808 1.57233 1.02950 1.05409 1.21785 0.96891 0.90918 0.96918 1.21444 0.99487 1.00688 0.94260 1.20610 0.99383 0.96667 0.99217 1.20541 1.01869 0.95255 0.97701 1.21936 0.99598 0.99806 0.97541 1.21868 0.96754 0.95449 0.92589 0.93414 0.92361 0.93361 0.90854 0.92846 0.92193 0.89778 0.92310 0.95725 0.96504 0.95851 0.93067 0.95096 0.90624 0.90011 0.95380 0.95088 0.91051 0.90672 0.91290 0.92283 0.92399 0.92019 0.92556 0.91474 0.91814 0.91039 0.91308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 9.91 37.16 0.37 -1.56 16 2 C -0.16 -2.53 5.30 -26.73 -0.14 -2.68 16 3 C 0.06 0.93 4.97 -3.83 -0.02 0.91 16 4 N -0.54 -9.76 4.67 -234.62 -1.10 -10.85 16 5 C 0.06 1.30 4.65 -3.82 -0.02 1.28 16 6 C 0.03 0.77 4.90 -27.88 -0.14 0.64 16 7 C -0.52 -14.85 9.11 -34.44 -0.31 -15.16 16 8 H 0.05 1.47 7.74 -52.48 -0.41 1.07 16 9 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 10 N -0.89 -27.06 13.29 55.43 0.74 -26.32 16 11 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 13 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 14 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 15 C 0.05 0.82 4.49 -3.82 -0.02 0.80 16 16 C 0.07 0.89 4.80 -3.82 -0.02 0.87 16 17 N -0.55 -6.41 4.71 -235.90 -1.11 -7.52 16 18 C 0.06 0.66 4.33 -4.49 -0.02 0.64 16 19 C -0.12 -1.05 5.63 -27.32 -0.15 -1.21 16 20 C -0.12 -0.95 5.30 -29.41 -0.16 -1.11 16 21 C -0.12 -0.89 5.30 -29.42 -0.16 -1.05 16 22 C -0.15 -1.31 5.60 -27.32 -0.15 -1.46 16 23 C 0.06 0.60 5.16 -4.49 -0.02 0.58 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.07 1.30 6.22 -51.93 -0.32 0.98 16 28 H 0.05 0.77 6.32 -51.93 -0.33 0.44 16 29 H 0.06 0.91 6.66 -51.93 -0.35 0.56 16 30 H 0.08 1.62 6.47 -51.93 -0.34 1.28 16 31 H 0.06 1.26 7.86 -51.93 -0.41 0.85 16 32 H 0.02 0.52 5.98 -51.93 -0.31 0.21 16 33 H 0.02 0.46 6.55 -51.93 -0.34 0.12 16 34 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 36 H 0.03 0.46 4.77 -51.93 -0.25 0.21 16 37 H 0.08 1.22 7.81 -51.93 -0.41 0.81 16 38 H 0.08 1.16 7.79 -51.93 -0.40 0.76 16 39 H 0.03 0.38 6.57 -51.92 -0.34 0.04 16 40 H 0.03 0.34 6.44 -51.93 -0.33 0.01 16 41 H 0.07 0.81 7.03 -51.93 -0.37 0.45 16 42 H 0.07 0.68 7.08 -51.93 -0.37 0.32 16 43 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.06 0.48 7.51 -51.93 -0.39 0.09 16 46 H 0.06 0.45 7.52 -51.93 -0.39 0.06 16 47 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 48 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.06 0.64 6.74 -51.93 -0.35 0.29 16 50 H 0.07 0.67 6.59 -51.93 -0.34 0.33 16 51 H 0.07 0.69 7.64 -51.93 -0.40 0.29 16 LS Contribution 369.15 15.07 5.56 5.56 Total: -1.00 -29.33 369.15 -11.63 -40.97 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -9.65 Total: -1.75 kcal Atomic # 6 Polarization: -15.86 SS G_CDS: -1.05 Total: -16.92 kcal Atomic # 7 Polarization: -43.22 SS G_CDS: -1.47 Total: -44.69 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -29.33 -11.63 -40.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344031020.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.899 kcal (2) G-P(sol) polarization free energy of solvation -29.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds