Wall clock time and date at job start Tue Mar 31 2020 05:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21274 * 120.00042 * 2 1 4 4 N 1.34777 * 119.99766 * 180.27536 * 2 1 3 5 5 C 1.46496 * 120.00266 * 179.97438 * 4 2 1 6 6 C 1.53000 * 109.47519 * 275.00721 * 5 4 2 7 7 C 1.52996 * 109.47359 * 179.97438 * 6 5 4 8 8 C 1.53003 * 109.47346 * 59.99730 * 7 6 5 9 9 N 1.46896 * 109.46958 * 180.02562 * 8 7 6 10 10 C 1.46896 * 111.00412 * 58.95387 * 9 8 7 11 11 C 1.46906 * 111.00028 * 294.99587 * 9 8 7 12 12 C 1.52993 * 109.47203 * 190.00365 * 11 9 8 13 13 C 1.53002 * 109.46974 * 180.02562 * 12 11 9 14 14 C 1.50707 * 109.47034 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99796 * 359.97438 * 14 13 12 16 16 C 1.37874 * 119.99822 * 179.97438 * 14 13 12 17 17 N 1.31516 * 120.00131 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99767 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46906 * 90.00082 * 18 16 14 20 20 H 1.48497 * 109.47404 * 210.00054 * 18 16 14 21 21 H 1.48498 * 109.47618 * 330.00561 * 18 16 14 22 22 C 1.52999 * 109.46786 * 300.00230 * 8 7 6 23 23 C 1.52995 * 109.47468 * 155.00186 * 5 4 2 24 24 H 1.08995 * 109.47415 * 179.72437 * 1 2 3 25 25 H 1.09001 * 109.46564 * 299.72602 * 1 2 3 26 26 H 1.08998 * 109.47012 * 59.71656 * 1 2 3 27 27 H 0.96999 * 120.00043 * 0.02562 * 4 2 1 28 28 H 1.09002 * 109.46908 * 35.00463 * 5 4 2 29 29 H 1.09002 * 109.46821 * 299.99796 * 6 5 4 30 30 H 1.08998 * 109.47335 * 59.98987 * 6 5 4 31 31 H 1.09002 * 109.47071 * 299.99744 * 7 6 5 32 32 H 1.08997 * 109.47363 * 180.02562 * 7 6 5 33 33 H 1.08995 * 109.46691 * 60.00023 * 8 7 6 34 34 H 1.08994 * 109.47374 * 59.99767 * 10 9 8 35 35 H 1.08999 * 109.47107 * 179.97438 * 10 9 8 36 36 H 1.09001 * 109.47163 * 299.99686 * 10 9 8 37 37 H 1.09000 * 109.46867 * 310.00793 * 11 9 8 38 38 H 1.08997 * 109.46550 * 70.00265 * 11 9 8 39 39 H 1.09000 * 109.47558 * 300.00004 * 12 11 9 40 40 H 1.09001 * 109.47386 * 59.99948 * 12 11 9 41 41 H 1.09003 * 109.46953 * 299.99496 * 13 12 11 42 42 H 1.08995 * 109.47073 * 60.00351 * 13 12 11 43 43 H 0.97000 * 119.99532 * 179.97438 * 17 16 14 44 44 H 1.09002 * 109.47140 * 299.99684 * 22 8 7 45 45 H 1.09006 * 109.46903 * 180.02562 * 22 8 7 46 46 H 1.09007 * 109.47250 * 300.00564 * 23 5 4 47 47 H 1.09002 * 109.46830 * 60.00230 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0056 5 6 3.6459 -1.1673 -0.0062 6 6 4.1554 -1.0349 -1.4427 7 6 5.6854 -1.0344 -1.4432 8 6 6.1961 -2.3443 -0.8397 9 7 7.6650 -2.3435 -0.8396 10 6 8.1909 -1.2092 -0.0684 11 6 8.1915 -2.3369 -2.2111 12 6 9.7006 -2.5867 -2.1792 13 6 10.2490 -2.5792 -3.6076 14 6 11.7354 -2.8260 -3.5763 15 1 12.2386 -2.9730 -2.6320 16 6 12.4528 -2.8640 -4.7530 17 7 11.8401 -2.6845 -5.9028 18 14 14.2953 -3.1691 -4.7142 19 1 14.5572 -4.6285 -4.7973 20 1 14.9348 -2.4851 -5.8666 21 1 14.8587 -2.6366 -3.4476 22 6 5.6865 -2.4767 0.5969 23 6 4.1560 -2.4775 0.5972 24 1 -0.3634 -1.0276 -0.0049 25 1 -0.3632 0.5096 0.8925 26 1 -0.3633 0.5182 -0.8874 27 1 1.6959 -2.0072 -0.0100 28 1 4.0095 -0.3283 0.5871 29 1 3.7918 -1.8740 -2.0360 30 1 3.7919 -0.1016 -1.8726 31 1 6.0486 -0.1951 -0.8501 32 1 6.0484 -0.9396 -2.4666 33 1 5.8328 -3.1835 -1.4328 34 1 7.8414 -1.2771 0.9618 35 1 9.2805 -1.2330 -0.0844 36 1 7.8409 -0.2762 -0.5100 37 1 7.7054 -3.1217 -2.7906 38 1 7.9931 -1.3692 -2.6717 39 1 10.1867 -1.8020 -1.5997 40 1 9.8991 -3.5545 -1.7185 41 1 9.7630 -3.3639 -4.1875 42 1 10.0507 -1.6113 -4.0678 43 1 12.3449 -2.7109 -6.7307 44 1 6.0498 -1.6374 1.1900 45 1 6.0507 -3.4097 1.0271 46 1 3.7930 -2.5718 1.6207 47 1 3.7924 -3.3165 0.0039 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344100375.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:40 Heat of formation + Delta-G solvation = -63.727348 kcal Electronic energy + Delta-G solvation = -22487.206410 eV Core-core repulsion = 19282.608870 eV Total energy + Delta-G solvation = -3204.597540 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.37090 -39.07467 -36.50867 -34.20795 -33.16541 -31.38711 -30.98544 -30.22887 -27.91828 -27.10879 -25.07138 -23.15712 -22.61010 -21.15132 -20.79430 -19.88219 -19.32024 -17.13437 -16.73258 -16.27371 -15.72089 -15.58633 -15.00119 -14.52597 -14.38807 -14.37823 -14.01531 -13.93306 -13.37226 -12.97724 -12.86896 -12.76416 -12.45600 -12.27311 -12.18109 -11.83829 -11.66189 -11.56611 -11.31192 -11.14999 -10.98500 -10.74448 -10.55106 -10.53567 -10.42082 -10.36551 -10.11329 -9.54563 -9.31767 -9.27077 -9.01284 -8.30834 -7.93941 -5.96290 -3.98084 2.35405 2.90605 3.34504 3.40416 3.44199 4.14768 4.40237 4.49977 4.53569 4.57344 4.77709 4.89159 4.99303 5.02905 5.06227 5.23558 5.27751 5.30329 5.39389 5.42008 5.43224 5.60777 5.63026 5.65856 5.82725 5.86445 5.87422 5.97809 6.03200 6.05104 6.12220 6.21996 6.28681 6.34903 6.39924 6.76084 6.84008 7.17302 7.20281 7.42530 7.45977 7.72782 7.88240 7.93819 8.04635 8.48181 9.09233 9.65677 11.15202 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.040040 B = 0.002568 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.140424 B =10902.769903 C =11209.261951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.508 3.492 3 O -0.547 6.547 4 N -0.727 5.727 5 C 0.142 3.858 6 C -0.122 4.122 7 C -0.152 4.152 8 C 0.083 3.917 9 N -0.535 5.535 10 C 0.016 3.984 11 C 0.055 3.945 12 C -0.105 4.105 13 C 0.022 3.978 14 C -0.517 4.517 15 H 0.055 0.945 16 C 0.055 3.945 17 N -0.897 5.897 18 Si 0.892 3.108 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 C -0.108 4.108 23 C -0.123 4.123 24 H 0.075 0.925 25 H 0.093 0.907 26 H 0.094 0.906 27 H 0.399 0.601 28 H 0.086 0.914 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.026 0.974 37 H 0.067 0.933 38 H 0.030 0.970 39 H 0.047 0.953 40 H 0.054 0.946 41 H 0.015 0.985 42 H 0.013 0.987 43 H 0.260 0.740 44 H 0.066 0.934 45 H 0.076 0.924 46 H 0.068 0.932 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.309 1.035 13.811 27.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.295 3.705 3 O -0.424 6.424 4 N -0.379 5.379 5 C 0.038 3.962 6 C -0.161 4.161 7 C -0.192 4.192 8 C -0.026 4.026 9 N -0.258 5.258 10 C -0.132 4.132 11 C -0.072 4.072 12 C -0.143 4.143 13 C -0.016 4.016 14 C -0.555 4.555 15 H 0.073 0.927 16 C -0.146 4.146 17 N -0.537 5.537 18 Si 0.720 3.280 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.199 1.199 22 C -0.146 4.146 23 C -0.161 4.161 24 H 0.094 0.906 25 H 0.112 0.888 26 H 0.112 0.888 27 H 0.233 0.767 28 H 0.104 0.896 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.099 0.901 34 H 0.081 0.919 35 H 0.092 0.908 36 H 0.044 0.956 37 H 0.085 0.915 38 H 0.048 0.952 39 H 0.065 0.935 40 H 0.073 0.927 41 H 0.033 0.967 42 H 0.031 0.969 43 H 0.069 0.931 44 H 0.085 0.915 45 H 0.095 0.905 46 H 0.087 0.913 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -22.667 1.370 13.859 26.604 hybrid contribution 0.481 0.188 -0.621 0.807 sum -22.187 1.558 13.238 25.883 Atomic orbital electron populations 1.21857 0.91849 1.04119 1.05282 1.20834 0.90576 0.83649 0.75438 1.90741 1.70730 1.31425 1.49512 1.46257 1.07523 1.08625 1.75462 1.21060 0.78862 0.99144 0.97131 1.21820 0.95887 1.02266 0.96122 1.22215 0.94968 0.99758 1.02230 1.21766 0.88118 0.96607 0.96069 1.62311 1.05596 1.42721 1.15137 1.22493 1.01386 0.91655 0.97703 1.22298 0.97895 0.99743 0.87253 1.21654 0.91271 1.00651 1.00699 1.19075 0.95464 0.96990 0.90073 1.21259 0.93357 1.48389 0.92518 0.92698 1.25035 0.98430 0.95496 0.95636 1.69971 1.35787 1.50458 0.97443 0.86599 0.85621 0.78272 0.77538 1.20678 1.21284 1.19896 1.21549 0.93185 1.03083 0.96779 1.21791 0.96790 0.96501 1.01036 0.90637 0.88835 0.88782 0.76653 0.89551 0.91788 0.91702 0.91420 0.91159 0.90139 0.91914 0.90793 0.95555 0.91458 0.95162 0.93455 0.92690 0.96682 0.96879 0.93078 0.91548 0.90510 0.91302 0.91257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.84 10.39 36.01 0.37 -0.47 16 2 C 0.51 4.69 7.90 -10.98 -0.09 4.60 16 3 O -0.55 -7.80 16.76 5.56 0.09 -7.71 16 4 N -0.73 -5.34 5.08 -53.81 -0.27 -5.62 16 5 C 0.14 1.30 2.45 -67.94 -0.17 1.13 16 6 C -0.12 -1.27 5.49 -26.73 -0.15 -1.42 16 7 C -0.15 -1.81 4.51 -26.73 -0.12 -1.93 16 8 C 0.08 0.99 2.23 -67.71 -0.15 0.84 16 9 N -0.54 -7.90 4.75 -234.90 -1.12 -9.02 16 10 C 0.02 0.22 8.62 60.06 0.52 0.73 16 11 C 0.06 0.97 4.40 -3.82 -0.02 0.95 16 12 C -0.10 -2.22 5.08 -26.73 -0.14 -2.35 16 13 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 14 C -0.52 -14.94 9.11 -34.44 -0.31 -15.26 16 15 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 16 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 17 N -0.90 -27.41 13.29 55.43 0.74 -26.68 16 18 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 21 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 22 C -0.11 -1.04 5.00 -26.71 -0.13 -1.17 16 23 C -0.12 -0.93 5.39 -26.71 -0.14 -1.07 16 24 H 0.07 0.17 7.91 -51.93 -0.41 -0.24 16 25 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.40 1.70 8.44 -40.82 -0.34 1.36 16 28 H 0.09 0.99 7.58 -51.93 -0.39 0.59 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.07 0.85 6.38 -51.93 -0.33 0.52 16 32 H 0.07 0.94 6.75 -51.93 -0.35 0.59 16 33 H 0.08 0.98 8.03 -51.93 -0.42 0.56 16 34 H 0.06 0.74 6.32 -51.93 -0.33 0.41 16 35 H 0.07 1.10 6.30 -51.93 -0.33 0.78 16 36 H 0.03 0.36 6.28 -51.93 -0.33 0.03 16 37 H 0.07 1.18 8.00 -51.93 -0.42 0.77 16 38 H 0.03 0.54 6.94 -51.93 -0.36 0.18 16 39 H 0.05 0.99 6.47 -51.93 -0.34 0.65 16 40 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 44 H 0.07 0.66 6.42 -51.93 -0.33 0.32 16 45 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 47 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 361.06 15.07 5.44 5.44 Total: -1.00 -33.49 361.06 -9.34 -42.83 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -8.44 Total: -2.79 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: -0.76 Total: -13.47 kcal Atomic # 7 Polarization: -40.66 SS G_CDS: -0.65 Total: -41.31 kcal Atomic # 8 Polarization: -7.80 SS G_CDS: 0.09 Total: -7.71 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.49 -9.34 -42.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344100375.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.895 kcal (2) G-P(sol) polarization free energy of solvation -33.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds