Wall clock time and date at job start Tue Mar 31 2020 05:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.47022 * 2 1 4 4 C 1.37104 * 119.99736 * 271.35606 * 3 2 1 5 5 H 1.07997 * 119.99445 * 184.40671 * 4 3 2 6 6 C 1.38946 * 119.99941 * 4.40628 * 4 3 2 7 7 N 1.31408 * 120.00448 * 25.69574 * 6 4 3 8 8 Si 1.86805 * 120.00008 * 205.68919 * 6 4 3 9 9 H 1.48496 * 109.46828 * 60.00216 * 8 6 4 10 10 H 1.48494 * 109.47248 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.46932 * 300.00578 * 8 6 4 12 12 C 1.34780 * 120.00236 * 91.35983 * 3 2 1 13 13 O 1.21284 * 119.99919 * 185.20621 * 12 3 2 14 14 C 1.50697 * 119.99576 * 5.20494 * 12 3 2 15 15 H 1.09004 * 109.47621 * 334.33665 * 14 12 3 16 16 C 1.53001 * 109.47141 * 94.33903 * 14 12 3 17 17 C 1.53002 * 109.46871 * 301.61311 * 16 14 12 18 18 C 1.52995 * 109.47111 * 61.61342 * 16 14 12 19 19 N 1.46897 * 109.46785 * 214.33676 * 14 12 3 20 20 C 1.46852 * 111.00066 * 186.54800 * 19 14 12 21 21 C 1.53035 * 109.52327 * 174.15694 * 20 19 14 22 22 C 1.53121 * 109.27782 * 59.18687 * 21 20 19 23 23 C 1.53120 * 109.15561 * 302.34193 * 22 21 20 24 24 C 1.46847 * 111.00139 * 62.34143 * 19 14 12 25 25 H 1.09003 * 109.46948 * 174.51951 * 1 2 3 26 26 H 1.09007 * 109.46922 * 294.50996 * 1 2 3 27 27 H 1.08999 * 109.47373 * 54.51697 * 1 2 3 28 28 H 1.08999 * 109.46799 * 239.99764 * 2 1 3 29 29 H 1.08998 * 109.47140 * 119.99999 * 2 1 3 30 30 H 0.96990 * 120.00509 * 179.97438 * 7 6 4 31 31 H 1.09005 * 109.46951 * 181.61395 * 16 14 12 32 32 H 1.08988 * 109.47168 * 52.11024 * 17 16 14 33 33 H 1.09002 * 109.46736 * 172.11574 * 17 16 14 34 34 H 1.08998 * 109.47054 * 292.10583 * 17 16 14 35 35 H 1.09005 * 109.47418 * 60.00257 * 18 16 14 36 36 H 1.09006 * 109.46942 * 179.97438 * 18 16 14 37 37 H 1.09005 * 109.47256 * 299.99866 * 18 16 14 38 38 H 1.08994 * 109.46609 * 294.17916 * 20 19 14 39 39 H 1.09006 * 109.45783 * 54.14848 * 20 19 14 40 40 H 1.09000 * 109.50926 * 299.24048 * 21 20 19 41 41 H 1.09007 * 109.50340 * 179.12212 * 21 20 19 42 42 H 1.08999 * 109.52458 * 182.44028 * 22 21 20 43 43 H 1.08993 * 109.57565 * 62.27545 * 22 21 20 44 44 H 1.08995 * 109.50542 * 297.71075 * 23 22 21 45 45 H 1.09004 * 109.53090 * 177.61584 * 23 22 21 46 46 H 1.08997 * 109.46200 * 305.85405 * 24 19 14 47 47 H 1.09004 * 109.46193 * 65.83593 * 24 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2203 2.0369 -1.1871 5 1 2.6472 3.0289 -1.1901 6 6 1.8758 1.4250 -2.3860 7 7 0.9393 0.5034 -2.4082 8 14 2.7438 1.9125 -3.9667 9 1 4.1990 1.6480 -3.8341 10 1 2.1969 1.1193 -5.0966 11 1 2.5251 3.3583 -4.2258 12 6 2.2691 2.0074 1.1669 13 8 2.5823 3.1791 1.1712 14 6 2.1602 1.2516 2.4661 15 1 1.4673 0.4188 2.3451 16 6 3.5377 0.7157 2.8613 17 6 4.0708 -0.1900 1.7493 18 6 4.4997 1.8868 3.0704 19 7 1.6652 2.1518 3.5161 20 6 1.6928 1.4943 4.8290 21 6 1.3107 2.5032 5.9143 22 6 -0.0903 3.0497 5.6259 23 6 -0.1044 3.6862 4.2333 24 6 0.3188 2.6430 3.1966 25 1 -0.3633 -1.0230 -0.0982 26 1 -0.3633 0.4264 0.9351 27 1 -0.3634 0.5965 -0.8368 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 0.6985 0.0765 -3.2451 31 1 3.4538 0.1448 3.7861 32 1 4.0230 0.3375 0.7968 33 1 5.1050 -0.4589 1.9643 34 1 3.4642 -1.0940 1.6949 35 1 4.1199 2.5321 3.8627 36 1 5.4810 1.5050 3.3525 37 1 4.5836 2.4577 2.1457 38 1 0.9831 0.6671 4.8359 39 1 2.6956 1.1139 5.0236 40 1 2.0280 3.3239 5.9172 41 1 1.3161 2.0110 6.8869 42 1 -0.3491 3.8008 6.3722 43 1 -0.8143 2.2358 5.6617 44 1 0.5906 4.5255 4.2097 45 1 -1.1098 4.0397 4.0044 46 1 0.3235 3.0969 2.2056 47 1 -0.3846 1.8104 3.2114 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344174090.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:10 Heat of formation + Delta-G solvation = -22.210748 kcal Electronic energy + Delta-G solvation = -25075.759134 eV Core-core repulsion = 21872.961889 eV Total energy + Delta-G solvation = -3202.797245 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.86583 -37.79360 -35.34633 -34.79910 -32.09554 -31.66577 -30.51474 -29.35336 -26.94564 -26.48381 -24.62129 -23.01528 -22.73981 -21.95874 -20.35900 -19.48840 -17.94090 -16.71948 -16.25420 -16.02804 -14.99789 -14.60315 -14.32589 -14.05318 -13.91800 -13.70036 -13.17439 -13.04211 -12.99872 -12.71194 -12.50922 -12.04498 -11.96833 -11.80359 -11.63914 -11.61152 -11.12016 -11.02273 -10.95426 -10.72670 -10.70373 -10.58151 -10.45621 -10.33073 -10.25248 -10.10721 -10.04793 -9.83660 -9.68792 -8.78932 -8.19130 -7.72869 -7.64685 -6.26884 -3.70146 3.20269 3.27748 3.32477 3.87259 4.11990 4.31138 4.87182 5.00640 5.04487 5.11047 5.14361 5.35070 5.46896 5.52131 5.57990 5.64788 5.72376 5.80920 5.84727 5.88019 6.00458 6.03051 6.08689 6.13717 6.16929 6.21379 6.26885 6.31462 6.43259 6.48107 6.51502 6.55729 6.60993 6.62476 6.73484 6.80700 6.86623 7.06112 7.29981 7.46947 7.53703 7.57445 7.86773 8.16774 8.60728 9.27683 9.52840 10.11713 10.69623 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021910 B = 0.005897 C = 0.005508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.676506 B = 4747.212572 C = 5082.517669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.121 3.879 3 N -0.446 5.446 4 C -0.303 4.303 5 H 0.103 0.897 6 C 0.030 3.970 7 N -0.867 5.867 8 Si 0.914 3.086 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.275 1.275 12 C 0.459 3.541 13 O -0.571 6.571 14 C 0.078 3.922 15 H 0.048 0.952 16 C -0.080 4.080 17 C -0.157 4.157 18 C -0.136 4.136 19 N -0.508 5.508 20 C 0.050 3.950 21 C -0.114 4.114 22 C -0.119 4.119 23 C -0.113 4.113 24 C 0.059 3.941 25 H 0.034 0.966 26 H 0.012 0.988 27 H 0.101 0.899 28 H 0.092 0.908 29 H 0.039 0.961 30 H 0.265 0.735 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.052 0.948 34 H 0.052 0.948 35 H 0.062 0.938 36 H 0.036 0.964 37 H 0.068 0.932 38 H 0.025 0.975 39 H 0.078 0.922 40 H 0.070 0.930 41 H 0.060 0.940 42 H 0.058 0.942 43 H 0.055 0.945 44 H 0.071 0.929 45 H 0.061 0.939 46 H 0.083 0.917 47 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.185 -2.853 11.844 12.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.003 4.003 3 N -0.166 5.166 4 C -0.431 4.431 5 H 0.121 0.879 6 C -0.172 4.172 7 N -0.508 5.508 8 Si 0.741 3.259 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.200 1.200 12 C 0.247 3.753 13 O -0.454 6.454 14 C -0.034 4.034 15 H 0.065 0.935 16 C -0.099 4.099 17 C -0.215 4.215 18 C -0.193 4.193 19 N -0.233 5.233 20 C -0.078 4.078 21 C -0.152 4.152 22 C -0.157 4.157 23 C -0.151 4.151 24 C -0.069 4.069 25 H 0.053 0.947 26 H 0.031 0.969 27 H 0.120 0.880 28 H 0.110 0.890 29 H 0.057 0.943 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.055 0.945 37 H 0.087 0.913 38 H 0.043 0.957 39 H 0.096 0.904 40 H 0.089 0.911 41 H 0.079 0.921 42 H 0.077 0.923 43 H 0.073 0.927 44 H 0.090 0.910 45 H 0.079 0.921 46 H 0.101 0.899 47 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 0.180 -1.983 11.686 11.854 hybrid contribution -0.412 -0.814 -0.916 1.293 sum -0.231 -2.797 10.770 11.129 Atomic orbital electron populations 1.22208 0.96784 1.00439 1.00946 1.21534 0.94574 0.83915 1.00251 1.43874 1.56428 1.11517 1.04759 1.19649 1.39027 1.02449 0.81953 0.87931 1.25128 0.95791 0.97203 0.99110 1.70181 1.25350 1.28023 1.27217 0.86181 0.80079 0.78643 0.80956 1.20129 1.21171 1.20023 1.19470 0.84611 0.87432 0.83820 1.90503 1.52433 1.16022 1.86393 1.21670 0.96389 0.93476 0.91844 0.93455 1.21063 0.94016 0.96789 0.98080 1.22078 1.00023 0.99261 1.00152 1.21728 0.96336 0.97596 1.03685 1.61588 1.23658 1.37467 1.00582 1.22180 1.00820 0.95079 0.89679 1.21559 0.97197 0.99301 0.97100 1.21575 0.96996 0.99860 0.97280 1.21542 1.00809 0.98742 0.93986 1.22050 0.88043 0.96758 1.00052 0.94722 0.96927 0.88048 0.89002 0.94328 0.92462 0.91647 0.90689 0.92940 0.92905 0.91871 0.94460 0.91283 0.95675 0.90394 0.91103 0.92129 0.92311 0.92669 0.90993 0.92066 0.89861 0.95865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.14 9.44 37.16 0.35 -2.79 16 2 C 0.12 2.67 4.19 -4.04 -0.02 2.66 16 3 N -0.45 -11.02 1.94 -114.82 -0.22 -11.24 16 4 C -0.30 -8.23 9.45 -14.93 -0.14 -8.37 16 5 H 0.10 2.98 7.31 -52.49 -0.38 2.59 16 6 C 0.03 0.76 4.95 -17.47 -0.09 0.68 16 7 N -0.87 -21.90 8.12 55.50 0.45 -21.45 16 8 Si 0.91 20.42 29.62 -169.99 -5.04 15.38 16 9 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 10 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 12 C 0.46 10.89 3.82 -10.99 -0.04 10.85 16 13 O -0.57 -15.48 14.57 5.55 0.08 -15.40 16 14 C 0.08 1.49 1.29 -68.87 -0.09 1.40 16 15 H 0.05 0.92 5.78 -51.93 -0.30 0.62 16 16 C -0.08 -1.35 2.20 -90.62 -0.20 -1.55 16 17 C -0.16 -2.63 7.83 37.16 0.29 -2.34 16 18 C -0.14 -2.36 8.51 37.16 0.32 -2.05 16 19 N -0.51 -8.98 3.47 -228.08 -0.79 -9.78 16 20 C 0.05 0.71 4.82 -3.83 -0.02 0.70 16 21 C -0.11 -1.39 6.09 -26.65 -0.16 -1.55 16 22 C -0.12 -1.45 6.00 -26.61 -0.16 -1.61 16 23 C -0.11 -1.64 6.09 -26.65 -0.16 -1.81 16 24 C 0.06 1.05 5.24 -3.83 -0.02 1.03 16 25 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.01 0.25 7.86 -51.93 -0.41 -0.16 16 27 H 0.10 2.50 6.05 -51.93 -0.31 2.19 16 28 H 0.09 2.19 6.12 -51.93 -0.32 1.87 16 29 H 0.04 0.76 3.73 -51.93 -0.19 0.57 16 30 H 0.26 6.42 8.31 -40.82 -0.34 6.08 16 31 H 0.07 0.95 6.29 -51.93 -0.33 0.62 16 32 H 0.07 1.51 5.89 -51.94 -0.31 1.20 16 33 H 0.05 0.77 8.13 -51.93 -0.42 0.34 16 34 H 0.05 0.81 6.89 -51.93 -0.36 0.46 16 35 H 0.06 1.09 7.14 -51.93 -0.37 0.72 16 36 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 1.44 6.52 -51.93 -0.34 1.10 16 38 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.08 1.05 5.60 -51.93 -0.29 0.76 16 40 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 45 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.08 1.79 6.67 -51.93 -0.35 1.44 16 47 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 338.69 15.07 5.10 5.10 Total: -1.00 -28.13 338.69 -8.59 -36.72 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -8.04 Total: 5.41 kcal Atomic # 6 Polarization: -4.61 SS G_CDS: -0.14 Total: -4.75 kcal Atomic # 7 Polarization: -41.91 SS G_CDS: -0.56 Total: -42.47 kcal Atomic # 8 Polarization: -15.48 SS G_CDS: 0.08 Total: -15.40 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.04 Total: 15.38 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -28.13 -8.59 -36.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344174090.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.513 kcal (2) G-P(sol) polarization free energy of solvation -28.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds