Wall clock time and date at job start Tue Mar 31 2020 05:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46493 * 109.47284 * 2 1 4 4 C 1.37103 * 120.00010 * 271.83537 * 3 2 1 5 5 H 1.07999 * 120.00230 * 142.31506 * 4 3 2 6 6 C 1.38949 * 119.99875 * 322.31482 * 4 3 2 7 7 N 1.31410 * 120.00002 * 157.77242 * 6 4 3 8 8 Si 1.86804 * 119.99871 * 337.76939 * 6 4 3 9 9 H 1.48501 * 109.46807 * 91.63989 * 8 6 4 10 10 H 1.48498 * 109.47315 * 211.63588 * 8 6 4 11 11 H 1.48499 * 109.47192 * 331.64077 * 8 6 4 12 12 C 1.34781 * 120.00261 * 91.83382 * 3 2 1 13 13 O 1.21286 * 119.99936 * 174.38466 * 12 3 2 14 14 C 1.50700 * 119.99812 * 354.38569 * 12 3 2 15 15 H 1.09003 * 109.46995 * 359.74122 * 14 12 3 16 16 C 1.52998 * 109.46815 * 239.74512 * 14 12 3 17 17 C 1.53000 * 109.47445 * 64.49664 * 16 14 12 18 18 C 1.53006 * 109.47020 * 184.49165 * 16 14 12 19 19 N 1.46895 * 109.47300 * 119.74411 * 14 12 3 20 20 C 1.46846 * 111.00021 * 59.20747 * 19 14 12 21 21 C 1.53037 * 109.52591 * 174.16171 * 20 19 14 22 22 C 1.53112 * 109.27676 * 59.18144 * 21 20 19 23 23 C 1.53123 * 109.16216 * 302.34644 * 22 21 20 24 24 C 1.46848 * 111.00168 * 295.00147 * 19 14 12 25 25 H 1.08998 * 109.46959 * 65.91041 * 1 2 3 26 26 H 1.08994 * 109.47081 * 185.91592 * 1 2 3 27 27 H 1.09004 * 109.47153 * 305.91522 * 1 2 3 28 28 H 1.08994 * 109.46997 * 239.99496 * 2 1 3 29 29 H 1.09000 * 109.46891 * 119.99792 * 2 1 3 30 30 H 0.97002 * 119.99725 * 180.02562 * 7 6 4 31 31 H 1.09001 * 109.47393 * 304.49169 * 16 14 12 32 32 H 1.09001 * 109.47141 * 187.61985 * 17 16 14 33 33 H 1.08998 * 109.47506 * 67.61053 * 17 16 14 34 34 H 1.08999 * 109.46743 * 307.61280 * 17 16 14 35 35 H 1.09001 * 109.47041 * 300.00220 * 18 16 14 36 36 H 1.09002 * 109.46722 * 60.00209 * 18 16 14 37 37 H 1.08994 * 109.47442 * 179.97438 * 18 16 14 38 38 H 1.08999 * 109.46499 * 294.17923 * 20 19 14 39 39 H 1.09005 * 109.46026 * 54.14674 * 20 19 14 40 40 H 1.09001 * 109.50079 * 299.23592 * 21 20 19 41 41 H 1.09002 * 109.53674 * 179.14474 * 21 20 19 42 42 H 1.09009 * 109.52503 * 182.44605 * 22 21 20 43 43 H 1.08996 * 109.57811 * 62.28730 * 22 21 20 44 44 H 1.09005 * 109.50450 * 297.71370 * 23 22 21 45 45 H 1.08995 * 109.53754 * 177.62045 * 23 22 21 46 46 H 1.09000 * 109.45871 * 305.85582 * 24 19 14 47 47 H 1.09000 * 109.46401 * 65.82604 * 24 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2111 2.0401 -1.1867 5 1 1.9730 3.0906 -1.2660 6 6 2.7126 1.3565 -2.2875 7 7 2.5002 1.8171 -3.4998 8 14 3.6889 -0.2175 -2.0442 9 1 2.7698 -1.3828 -2.0953 10 1 4.7051 -0.3410 -3.1199 11 1 4.3676 -0.1798 -0.7239 12 6 2.2783 2.0041 1.1666 13 8 2.7781 3.1092 1.1658 14 6 1.9479 1.3275 2.4720 15 1 1.5051 0.3514 2.2735 16 6 0.9547 2.1882 3.2554 17 6 -0.3648 2.2729 2.4856 18 6 0.7052 1.5581 4.6272 19 7 3.1759 1.1570 3.2598 20 6 3.8114 2.4528 3.5309 21 6 5.0015 2.2520 4.4718 22 6 6.0052 1.2967 3.8204 23 6 5.3057 -0.0282 3.5041 24 6 4.1068 0.2388 2.5914 25 1 -0.3633 0.4195 -0.9382 26 1 -0.3633 -1.0221 0.1059 27 1 -0.3634 0.6028 0.8323 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.8500 1.3396 -4.2683 31 1 1.3649 3.1897 3.3848 32 1 -1.0238 2.9919 2.9723 33 1 -0.8419 1.2930 2.4733 34 1 -0.1686 2.5944 1.4628 35 1 0.2950 0.5566 4.4979 36 1 1.6452 1.4978 5.1757 37 1 -0.0020 2.1715 5.1856 38 1 4.1583 2.8902 2.5948 39 1 3.0880 3.1213 3.9979 40 1 4.6534 1.8275 5.4135 41 1 5.4825 3.2116 4.6611 42 1 6.8340 1.1166 4.5052 43 1 6.3839 1.7379 2.8984 44 1 4.9624 -0.4887 4.4306 45 1 6.0036 -0.6980 3.0018 46 1 3.5980 -0.7008 2.3759 47 1 4.4524 0.6865 1.6596 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344174092.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:12 Heat of formation + Delta-G solvation = -29.854442 kcal Electronic energy + Delta-G solvation = -25281.825079 eV Core-core repulsion = 22078.696378 eV Total energy + Delta-G solvation = -3203.128701 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.17505 -37.67243 -35.55053 -35.05807 -32.31149 -32.11921 -30.49543 -29.72677 -27.29455 -26.64276 -24.63540 -22.98464 -22.89222 -22.59112 -20.16695 -19.61514 -18.23337 -16.91922 -16.44067 -16.11740 -15.58390 -14.89865 -14.42147 -14.16319 -14.00709 -13.59948 -13.44380 -13.27066 -13.09882 -12.87943 -12.77786 -12.31252 -12.22794 -12.06917 -11.94050 -11.80050 -11.61385 -11.33945 -11.03916 -10.94843 -10.74684 -10.69304 -10.65651 -10.46395 -10.43418 -10.17581 -9.95356 -9.82289 -9.75363 -9.16222 -8.94120 -7.77160 -7.48563 -6.41571 -3.96764 2.98877 3.18737 3.22914 3.64382 4.12294 4.26386 4.39870 4.95649 5.00619 5.06015 5.15663 5.22952 5.30270 5.41268 5.51017 5.53838 5.64311 5.74318 5.75937 5.80541 5.88465 5.91032 5.92253 5.99213 6.00680 6.07369 6.12441 6.16044 6.17744 6.20941 6.23681 6.33732 6.38628 6.41600 6.46554 6.49545 6.64438 6.67204 6.76169 6.81966 7.37278 7.42851 7.55460 8.27910 8.51193 8.97236 9.31800 9.78544 10.70713 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015610 B = 0.008206 C = 0.006489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.239518 B = 3411.426763 C = 4314.110384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.082 3.918 3 N -0.462 5.462 4 C -0.311 4.311 5 H 0.102 0.898 6 C 0.061 3.939 7 N -0.863 5.863 8 Si 0.874 3.126 9 H -0.274 1.274 10 H -0.288 1.288 11 H -0.264 1.264 12 C 0.441 3.559 13 O -0.562 6.562 14 C 0.067 3.933 15 H 0.091 0.909 16 C -0.078 4.078 17 C -0.151 4.151 18 C -0.133 4.133 19 N -0.509 5.509 20 C 0.039 3.961 21 C -0.114 4.114 22 C -0.122 4.122 23 C -0.111 4.111 24 C 0.045 3.955 25 H 0.066 0.934 26 H 0.051 0.949 27 H 0.063 0.937 28 H 0.070 0.930 29 H 0.061 0.939 30 H 0.273 0.727 31 H 0.077 0.923 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.063 0.937 35 H 0.049 0.951 36 H 0.066 0.934 37 H 0.044 0.956 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.058 0.942 43 H 0.059 0.941 44 H 0.068 0.932 45 H 0.061 0.939 46 H 0.068 0.932 47 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.440 -5.768 14.228 15.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.042 4.042 3 N -0.184 5.184 4 C -0.439 4.439 5 H 0.120 0.880 6 C -0.145 4.145 7 N -0.500 5.500 8 Si 0.702 3.298 9 H -0.201 1.201 10 H -0.215 1.215 11 H -0.189 1.189 12 C 0.228 3.772 13 O -0.444 6.444 14 C -0.045 4.045 15 H 0.109 0.891 16 C -0.097 4.097 17 C -0.209 4.209 18 C -0.190 4.190 19 N -0.234 5.234 20 C -0.088 4.088 21 C -0.152 4.152 22 C -0.159 4.159 23 C -0.149 4.149 24 C -0.083 4.083 25 H 0.085 0.915 26 H 0.070 0.930 27 H 0.082 0.918 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.096 0.904 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.068 0.932 36 H 0.085 0.915 37 H 0.063 0.937 38 H 0.088 0.912 39 H 0.092 0.908 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.078 0.922 44 H 0.086 0.914 45 H 0.080 0.920 46 H 0.086 0.914 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -0.277 -5.426 14.445 15.433 hybrid contribution 0.739 -0.659 -1.099 1.479 sum 0.462 -6.085 13.346 14.675 Atomic orbital electron populations 1.22298 0.96156 1.00914 1.03561 1.21897 0.95088 0.86027 1.01144 1.43925 1.57063 1.11501 1.05869 1.19014 1.42655 0.97292 0.84897 0.88009 1.25352 0.96199 0.98074 0.94848 1.69761 1.41842 1.40503 0.97858 0.87059 0.80734 0.83201 0.78799 1.20127 1.21523 1.18857 1.21197 0.82429 0.88123 0.85440 1.90496 1.46000 1.21055 1.86840 1.22028 0.91838 0.99934 0.90702 0.89093 1.20998 0.94368 0.99458 0.94917 1.21972 0.96521 1.01297 1.01080 1.21700 1.01573 0.99762 0.96001 1.62441 1.05097 1.12173 1.43663 1.22376 0.95735 0.90577 1.00162 1.21587 0.95828 0.98853 0.98885 1.21572 0.97742 0.96032 1.00577 1.21521 0.96243 0.97236 0.99862 1.22161 0.93549 0.96549 0.96050 0.91486 0.92970 0.91818 0.91231 0.92126 0.91665 0.90449 0.92744 0.92571 0.91796 0.93212 0.91506 0.93672 0.91239 0.90814 0.91852 0.92060 0.92374 0.92237 0.91372 0.92039 0.91351 0.94076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.94 10.08 37.16 0.37 -2.57 16 2 C 0.08 1.64 4.58 -4.04 -0.02 1.62 16 3 N -0.46 -10.96 2.17 -114.82 -0.25 -11.21 16 4 C -0.31 -8.74 9.33 -14.93 -0.14 -8.88 16 5 H 0.10 3.23 7.97 -52.49 -0.42 2.82 16 6 C 0.06 1.69 5.31 -17.47 -0.09 1.60 16 7 N -0.86 -24.98 13.96 55.50 0.77 -24.21 16 8 Si 0.87 20.72 25.20 -169.99 -4.28 16.44 16 9 H -0.27 -6.03 6.50 56.52 0.37 -5.66 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.26 -6.24 7.11 56.52 0.40 -5.84 16 12 C 0.44 9.95 4.13 -10.98 -0.05 9.90 16 13 O -0.56 -14.72 13.85 5.55 0.08 -14.64 16 14 C 0.07 1.18 1.40 -68.87 -0.10 1.08 16 15 H 0.09 1.52 5.27 -51.93 -0.27 1.25 16 16 C -0.08 -1.22 1.97 -90.62 -0.18 -1.40 16 17 C -0.15 -2.28 7.85 37.16 0.29 -1.99 16 18 C -0.13 -1.69 8.98 37.16 0.33 -1.36 16 19 N -0.51 -8.39 3.69 -228.09 -0.84 -9.23 16 20 C 0.04 0.65 4.38 -3.83 -0.02 0.64 16 21 C -0.11 -1.55 6.09 -26.65 -0.16 -1.71 16 22 C -0.12 -1.63 6.00 -26.61 -0.16 -1.79 16 23 C -0.11 -1.50 6.09 -26.65 -0.16 -1.66 16 24 C 0.04 0.75 5.10 -3.84 -0.02 0.73 16 25 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.06 1.02 4.62 -51.93 -0.24 0.78 16 28 H 0.07 1.50 3.09 -51.93 -0.16 1.34 16 29 H 0.06 1.07 5.59 -51.93 -0.29 0.78 16 30 H 0.27 7.34 8.31 -40.82 -0.34 7.01 16 31 H 0.08 1.34 6.37 -51.93 -0.33 1.01 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.75 6.85 -51.93 -0.36 0.40 16 34 H 0.06 1.16 6.73 -51.93 -0.35 0.81 16 35 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.87 7.44 -51.93 -0.39 0.48 16 37 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.07 1.45 5.79 -51.93 -0.30 1.15 16 39 H 0.07 1.22 6.13 -51.93 -0.32 0.90 16 40 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.06 0.66 8.14 -51.92 -0.42 0.23 16 43 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 45 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.07 1.07 7.58 -51.93 -0.39 0.67 16 47 H 0.04 0.84 7.44 -51.93 -0.39 0.45 16 LS Contribution 339.63 15.07 5.12 5.12 Total: -1.00 -30.22 339.63 -7.52 -37.74 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -8.02 Total: 5.77 kcal Atomic # 6 Polarization: -5.69 SS G_CDS: -0.09 Total: -5.78 kcal Atomic # 7 Polarization: -44.33 SS G_CDS: -0.32 Total: -44.65 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: 0.08 Total: -14.64 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -4.28 Total: 16.44 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.22 -7.52 -37.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344174092.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.887 kcal (2) G-P(sol) polarization free energy of solvation -30.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds