Wall clock time and date at job start Tue Mar 31 2020 05:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46501 * 109.47493 * 2 1 4 4 C 1.36940 * 119.99739 * 86.73053 * 3 2 1 5 5 H 1.07999 * 120.00272 * 324.07180 * 4 3 2 6 6 C 1.38813 * 119.99794 * 144.07859 * 4 3 2 7 7 N 1.31616 * 120.00074 * 155.41158 * 6 4 3 8 8 Si 1.86800 * 120.00060 * 335.40963 * 6 4 3 9 9 H 1.48499 * 109.46941 * 86.40971 * 8 6 4 10 10 H 1.48493 * 109.47415 * 206.41288 * 8 6 4 11 11 H 1.48499 * 109.46832 * 326.41600 * 8 6 4 12 12 C 1.46493 * 120.00026 * 266.73071 * 3 2 1 13 13 H 1.08997 * 109.47300 * 180.71958 * 12 3 2 14 14 C 1.53006 * 109.47216 * 60.72365 * 12 3 2 15 15 C 1.50699 * 109.47448 * 300.72673 * 12 3 2 16 16 O 1.21281 * 119.99719 * 13.00791 * 15 12 3 17 17 N 1.34771 * 120.00622 * 193.29071 * 15 12 3 18 18 C 1.46932 * 120.62649 * 4.88852 * 17 15 12 19 19 C 1.53621 * 108.54130 * 126.37055 * 18 17 15 20 20 H 1.08997 * 109.66487 * 294.84573 * 19 18 17 21 21 C 1.53004 * 109.43250 * 174.72359 * 19 18 17 22 22 C 1.53040 * 109.24320 * 54.85807 * 19 18 17 23 23 C 1.53035 * 109.53509 * 298.50761 * 22 19 18 24 24 H 1.08997 * 109.49910 * 301.41105 * 23 22 19 25 25 C 1.53010 * 109.49554 * 181.31707 * 23 22 19 26 26 C 1.46925 * 120.63514 * 185.17142 * 17 15 12 27 27 H 1.08996 * 109.47285 * 185.90158 * 1 2 3 28 28 H 1.08997 * 109.47067 * 305.90605 * 1 2 3 29 29 H 1.09006 * 109.46920 * 65.90242 * 1 2 3 30 30 H 1.08996 * 109.47520 * 239.99482 * 2 1 3 31 31 H 1.09007 * 109.46720 * 119.99985 * 2 1 3 32 32 H 0.97005 * 120.00320 * 179.97438 * 7 6 4 33 33 H 1.09006 * 109.46822 * 293.89645 * 14 12 3 34 34 H 1.09002 * 109.46717 * 53.89437 * 14 12 3 35 35 H 1.08994 * 109.47221 * 173.90026 * 14 12 3 36 36 H 1.08997 * 109.58805 * 246.20632 * 18 17 15 37 37 H 1.09004 * 109.58616 * 6.63068 * 18 17 15 38 38 H 1.09000 * 109.47366 * 300.29185 * 21 19 18 39 39 H 1.09003 * 109.47012 * 60.28681 * 21 19 18 40 40 H 1.08998 * 109.47514 * 180.28511 * 21 19 18 41 41 H 1.09005 * 109.45952 * 178.48964 * 22 19 18 42 42 H 1.09000 * 109.44785 * 58.52558 * 22 19 18 43 43 H 1.09000 * 109.46939 * 300.15888 * 25 23 22 44 44 H 1.08997 * 109.47069 * 60.16407 * 25 23 22 45 45 H 1.08998 * 109.46948 * 180.16377 * 25 23 22 46 46 H 1.09000 * 109.58419 * 353.36770 * 26 17 15 47 47 H 1.08997 * 109.58598 * 113.79990 * 26 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1829 2.0492 1.1840 5 1 1.4922 1.8842 1.9977 6 6 3.2374 2.9387 1.3384 7 7 3.1528 3.9132 2.2190 8 14 4.7765 2.7525 0.2963 9 1 4.5902 3.4649 -0.9933 10 1 5.9368 3.3324 1.0190 11 1 5.0257 1.3122 0.0345 12 6 2.3308 2.0476 -1.2666 13 1 2.6895 3.0574 -1.0671 14 6 1.0705 2.1158 -2.1315 15 6 3.3974 1.2701 -1.9937 16 8 3.6843 0.1490 -1.6307 17 7 4.0365 1.8225 -3.0438 18 6 3.7815 3.2183 -3.4254 19 6 5.1251 3.9602 -3.4906 20 1 5.5677 4.0055 -2.4956 21 6 4.8977 5.3801 -4.0134 22 6 6.0685 3.2129 -4.4359 23 6 6.3227 1.8035 -3.8965 24 1 6.7539 1.8686 -2.8976 25 6 7.2919 1.0686 -4.8248 26 6 4.9969 1.0387 -3.8325 27 1 -0.3633 -1.0222 0.1057 28 1 -0.3633 0.6027 0.8324 29 1 -0.3633 0.4196 -0.9382 30 1 1.8934 -0.5139 -0.8899 31 1 1.8932 -0.5139 0.8901 32 1 3.8898 4.5345 2.3272 33 1 0.7737 1.1077 -2.4212 34 1 0.2654 2.5827 -1.5641 35 1 1.2746 2.7054 -3.0252 36 1 3.2970 3.2476 -4.4014 37 1 3.1384 3.6888 -2.6816 38 1 4.4539 5.3344 -5.0079 39 1 4.2256 5.9119 -3.3399 40 1 5.8513 5.9055 -4.0647 41 1 7.0139 3.7511 -4.5057 42 1 5.6144 3.1470 -5.4246 43 1 6.8605 1.0053 -5.8239 44 1 8.2351 1.6131 -4.8701 45 1 7.4704 0.0638 -4.4418 46 1 5.1560 0.0707 -3.3574 47 1 4.6096 0.8940 -4.8410 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345362102.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:26 Heat of formation + Delta-G solvation = -18.652007 kcal Electronic energy + Delta-G solvation = -25010.688024 eV Core-core repulsion = 21808.045098 eV Total energy + Delta-G solvation = -3202.642927 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.18243 -37.91149 -35.76717 -33.85983 -33.28104 -31.95661 -30.93211 -28.72447 -26.79915 -26.72660 -25.51833 -24.00746 -22.90754 -20.94141 -20.62535 -19.99002 -18.65671 -17.03191 -16.52553 -15.57780 -15.44774 -15.02763 -14.77057 -14.32776 -14.07047 -13.73739 -13.30519 -13.08305 -12.97248 -12.84371 -12.45535 -12.36636 -12.16137 -12.10642 -11.85599 -11.78074 -11.70447 -11.59328 -11.45185 -11.14568 -10.87094 -10.75459 -10.58859 -10.48980 -10.32393 -10.28914 -10.12170 -9.77581 -9.48421 -8.89929 -8.47357 -8.19852 -6.81903 -5.99239 -3.37642 3.18310 3.29673 3.36329 3.52955 3.71243 4.53945 4.60780 4.77291 4.81226 4.93241 4.96745 5.19036 5.27498 5.35892 5.37624 5.48880 5.53357 5.55356 5.64268 5.65726 5.77601 5.79497 5.85302 5.88602 5.93947 5.99607 6.04912 6.07056 6.15573 6.19972 6.21403 6.25610 6.39920 6.44280 6.47205 6.49486 6.69864 6.78001 6.91119 6.96636 7.26782 7.81128 8.05333 8.39923 8.77176 9.02777 9.72244 10.13170 11.15498 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017024 B = 0.007641 C = 0.006702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.354103 B = 3663.636843 C = 4176.706780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.138 3.862 3 N -0.579 5.579 4 C -0.265 4.265 5 H 0.085 0.915 6 C 0.034 3.966 7 N -0.898 5.898 8 Si 0.839 3.161 9 H -0.264 1.264 10 H -0.305 1.305 11 H -0.256 1.256 12 C 0.144 3.856 13 H 0.101 0.899 14 C -0.154 4.154 15 C 0.496 3.504 16 O -0.528 6.528 17 N -0.621 5.621 18 C 0.115 3.885 19 C -0.118 4.118 20 H 0.081 0.919 21 C -0.143 4.143 22 C -0.104 4.104 23 C -0.111 4.111 24 H 0.071 0.929 25 C -0.142 4.142 26 C 0.117 3.883 27 H 0.037 0.963 28 H 0.053 0.947 29 H 0.044 0.956 30 H 0.057 0.943 31 H 0.048 0.952 32 H 0.262 0.738 33 H 0.052 0.948 34 H 0.071 0.929 35 H 0.048 0.952 36 H 0.064 0.936 37 H 0.090 0.910 38 H 0.055 0.945 39 H 0.059 0.941 40 H 0.055 0.945 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.055 0.945 44 H 0.055 0.945 45 H 0.056 0.944 46 H 0.088 0.912 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.049 -0.117 -16.611 16.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.013 3.987 3 N -0.299 5.299 4 C -0.393 4.393 5 H 0.103 0.897 6 C -0.166 4.166 7 N -0.539 5.539 8 Si 0.667 3.333 9 H -0.191 1.191 10 H -0.233 1.233 11 H -0.180 1.180 12 C 0.032 3.968 13 H 0.119 0.881 14 C -0.214 4.214 15 C 0.284 3.716 16 O -0.403 6.403 17 N -0.356 5.356 18 C -0.008 4.008 19 C -0.137 4.137 20 H 0.099 0.901 21 C -0.201 4.201 22 C -0.142 4.142 23 C -0.130 4.130 24 H 0.090 0.910 25 C -0.199 4.199 26 C -0.007 4.007 27 H 0.056 0.944 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.090 0.910 35 H 0.067 0.933 36 H 0.083 0.917 37 H 0.108 0.892 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.074 0.926 44 H 0.074 0.926 45 H 0.075 0.925 46 H 0.106 0.894 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.245 -0.633 -16.247 16.580 hybrid contribution 1.159 0.114 -0.425 1.240 sum 4.404 -0.519 -16.672 17.252 Atomic orbital electron populations 1.22418 0.99769 0.99326 1.01305 1.20964 0.91299 0.85795 1.00639 1.43974 1.75641 1.09849 1.00440 1.18851 1.08415 1.19979 0.92060 0.89722 1.25477 0.97466 0.97068 0.96613 1.69900 1.32001 1.14539 1.37506 0.87635 0.85260 0.80230 0.80174 1.19125 1.23260 1.18036 1.20617 0.91835 0.96644 0.87659 0.88149 1.22305 0.98868 1.01428 0.98768 1.22410 0.82711 0.87805 0.78678 1.90577 1.65191 1.20311 1.64204 1.48337 1.43325 1.12589 1.31380 1.21887 0.96805 0.81322 1.00775 1.21770 0.96296 0.94941 1.00686 0.90068 1.21746 1.01828 0.95529 1.00972 1.21617 0.99206 0.94863 0.98516 1.21533 0.95897 0.95485 1.00123 0.91020 1.21740 0.98732 1.00315 0.99154 1.21527 0.88016 0.95940 0.95173 0.94395 0.92828 0.93704 0.92428 0.93374 0.92821 0.92868 0.90990 0.93284 0.91740 0.89194 0.92631 0.92167 0.92554 0.91953 0.91879 0.92609 0.92559 0.92500 0.89372 0.92144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.17 9.95 37.16 0.37 -2.80 16 2 C 0.14 3.07 5.29 -4.04 -0.02 3.05 16 3 N -0.58 -14.20 1.89 -166.98 -0.32 -14.51 16 4 C -0.26 -7.50 9.91 -15.06 -0.15 -7.65 16 5 H 0.09 2.57 8.06 -52.49 -0.42 2.14 16 6 C 0.03 0.99 5.06 -17.43 -0.09 0.90 16 7 N -0.90 -27.37 13.97 55.49 0.78 -26.60 16 8 Si 0.84 21.78 23.60 -169.99 -4.01 17.77 16 9 H -0.26 -6.00 2.94 56.52 0.17 -5.84 16 10 H -0.30 -8.25 7.11 56.52 0.40 -7.84 16 11 H -0.26 -7.24 6.07 56.52 0.34 -6.89 16 12 C 0.14 3.11 1.21 -69.08 -0.08 3.02 16 13 H 0.10 2.30 3.68 -51.93 -0.19 2.11 16 14 C -0.15 -2.70 7.82 37.16 0.29 -2.41 16 15 C 0.50 10.51 3.85 -10.99 -0.04 10.47 16 16 O -0.53 -12.78 12.56 5.56 0.07 -12.71 16 17 N -0.62 -10.77 2.85 -172.50 -0.49 -11.26 16 18 C 0.12 1.68 3.73 -3.48 -0.01 1.67 16 19 C -0.12 -1.59 2.73 -90.27 -0.25 -1.84 16 20 H 0.08 1.34 6.41 -51.93 -0.33 1.01 16 21 C -0.14 -1.55 9.20 37.16 0.34 -1.21 16 22 C -0.10 -1.21 4.45 -26.69 -0.12 -1.33 16 23 C -0.11 -1.45 2.87 -90.50 -0.26 -1.71 16 24 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 25 C -0.14 -1.45 9.20 37.16 0.34 -1.11 16 26 C 0.12 1.74 5.72 -3.71 -0.02 1.72 16 27 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 29 H 0.04 0.78 6.06 -51.93 -0.31 0.47 16 30 H 0.06 1.29 5.89 -51.93 -0.31 0.98 16 31 H 0.05 1.12 8.07 -51.93 -0.42 0.70 16 32 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 33 H 0.05 0.91 6.85 -51.93 -0.36 0.55 16 34 H 0.07 1.28 8.12 -51.93 -0.42 0.86 16 35 H 0.05 0.71 6.74 -51.93 -0.35 0.36 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.09 1.43 4.88 -51.93 -0.25 1.17 16 38 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 46 H 0.09 1.49 7.00 -51.93 -0.36 1.13 16 47 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 337.88 15.07 5.09 5.09 Total: -1.00 -32.51 337.88 -7.24 -39.75 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -8.66 Total: 1.70 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: 0.30 Total: 0.77 kcal Atomic # 7 Polarization: -52.34 SS G_CDS: -0.03 Total: -52.37 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: 0.07 Total: -12.71 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.01 Total: 17.77 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.51 -7.24 -39.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345362102.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.094 kcal (2) G-P(sol) polarization free energy of solvation -32.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds