Wall clock time and date at job start Tue Mar 31 2020 05:23:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46498 * 109.47345 * 2 1 4 4 C 1.36935 * 120.00373 * 83.58158 * 3 2 1 5 5 H 1.07995 * 120.00076 * 169.51133 * 4 3 2 6 6 C 1.38810 * 119.99653 * 349.51764 * 4 3 2 7 7 N 1.31621 * 120.00245 * 2.10933 * 6 4 3 8 8 Si 1.86798 * 119.99821 * 182.12001 * 6 4 3 9 9 H 1.48496 * 109.47224 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47383 * 119.99867 * 8 6 4 11 11 H 1.48500 * 109.46974 * 239.99453 * 8 6 4 12 12 C 1.46506 * 119.99769 * 263.57954 * 3 2 1 13 13 H 1.08999 * 109.47240 * 173.61700 * 12 3 2 14 14 C 1.53005 * 109.46862 * 53.61388 * 12 3 2 15 15 C 1.50699 * 109.47028 * 293.61884 * 12 3 2 16 16 O 1.21278 * 120.00640 * 23.46150 * 15 12 3 17 17 N 1.34786 * 119.99701 * 203.46376 * 15 12 3 18 18 C 1.46923 * 120.62921 * 354.72132 * 17 15 12 19 19 C 1.53192 * 108.77727 * 126.37036 * 18 17 15 20 20 H 1.08996 * 109.49309 * 294.68127 * 19 18 17 21 21 C 1.52999 * 109.49825 * 174.61867 * 19 18 17 22 22 C 1.53035 * 109.33795 * 54.64849 * 19 18 17 23 23 C 1.53110 * 109.50509 * 298.65357 * 22 19 18 24 24 H 1.08998 * 109.48745 * 181.30559 * 23 22 19 25 25 C 1.53002 * 109.51150 * 301.37291 * 23 22 19 26 26 C 1.46925 * 120.62981 * 174.69686 * 17 15 12 27 27 H 1.09003 * 109.47139 * 66.28560 * 1 2 3 28 28 H 1.08996 * 109.47619 * 186.28351 * 1 2 3 29 29 H 1.08997 * 109.47437 * 306.28549 * 1 2 3 30 30 H 1.09008 * 109.46883 * 239.99505 * 2 1 3 31 31 H 1.08998 * 109.46837 * 120.00314 * 2 1 3 32 32 H 0.96998 * 120.00112 * 180.02562 * 7 6 4 33 33 H 1.08991 * 109.47292 * 302.86135 * 14 12 3 34 34 H 1.08997 * 109.46778 * 62.87079 * 14 12 3 35 35 H 1.09007 * 109.46727 * 182.86007 * 14 12 3 36 36 H 1.09001 * 109.58966 * 6.58018 * 18 17 15 37 37 H 1.09001 * 109.70252 * 246.22492 * 18 17 15 38 38 H 1.08995 * 109.47384 * 60.05922 * 21 19 18 39 39 H 1.08996 * 109.46943 * 180.02562 * 21 19 18 40 40 H 1.09010 * 109.46823 * 300.06210 * 21 19 18 41 41 H 1.08997 * 109.46430 * 58.63931 * 22 19 18 42 42 H 1.08997 * 109.45955 * 178.60145 * 22 19 18 43 43 H 1.09002 * 109.46911 * 185.47130 * 25 23 22 44 44 H 1.09002 * 109.47133 * 305.46514 * 25 23 22 45 45 H 1.08999 * 109.47633 * 65.46826 * 25 23 22 46 46 H 1.09003 * 109.58587 * 353.41743 * 26 17 15 47 47 H 1.08997 * 109.58597 * 113.69695 * 26 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1216 2.0709 1.1784 5 1 2.6358 3.0203 1.2052 6 6 1.5655 1.5499 2.3386 7 7 0.9752 0.3737 2.3148 8 14 1.6546 2.5181 3.9336 9 1 2.3650 3.8002 3.6954 10 1 0.2799 2.7966 4.4211 11 1 2.3903 1.7269 4.9524 12 6 2.3963 2.0245 -1.2608 13 1 2.6240 3.0748 -1.0789 14 6 1.2379 1.9184 -2.2548 15 6 3.6112 1.3383 -1.8304 16 8 3.8637 0.1940 -1.5180 17 7 4.4172 1.9965 -2.6870 18 6 4.0639 3.3403 -3.1647 19 6 5.2390 4.2849 -2.8931 20 1 5.3812 4.3885 -1.8174 21 6 4.9434 5.6563 -3.5036 22 6 6.5089 3.7082 -3.5230 23 6 6.8230 2.3506 -2.8888 24 1 7.7403 1.9508 -3.3212 25 6 7.0023 2.5211 -1.3789 26 6 5.6660 1.3841 -3.1604 27 1 -0.3633 0.4133 -0.9409 28 1 -0.3634 -1.0214 0.1125 29 1 -0.3634 0.6082 0.8283 30 1 1.8933 -0.5140 -0.8900 31 1 1.8932 -0.5139 0.8900 32 1 0.5863 0.0098 3.1255 33 1 0.9767 0.8700 -2.3978 34 1 0.3746 2.4581 -1.8654 35 1 1.5372 2.3518 -3.2091 36 1 3.1797 3.6955 -2.6356 37 1 3.8609 3.3082 -4.2352 38 1 4.0382 6.0661 -3.0555 39 1 5.7799 6.3279 -3.3105 40 1 4.8012 5.5521 -4.5794 41 1 6.3573 3.5816 -4.5950 42 1 7.3412 4.3910 -3.3523 43 1 7.3208 1.5748 -0.9417 44 1 7.7578 3.2828 -1.1864 45 1 6.0560 2.8271 -0.9329 46 1 5.8387 0.4485 -2.6284 47 1 5.5942 1.1881 -4.2302 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345362105.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:28 Heat of formation + Delta-G solvation = -9.562109 kcal Electronic energy + Delta-G solvation = -24627.210177 eV Core-core repulsion = 21424.961418 eV Total energy + Delta-G solvation = -3202.248759 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.10392 -37.81472 -35.72829 -33.48992 -33.21684 -31.93765 -29.62116 -28.49543 -26.91530 -26.69032 -25.44901 -24.03180 -22.54031 -21.51003 -20.58706 -19.11877 -18.21286 -17.00229 -16.27445 -15.58713 -15.13925 -14.89213 -14.71600 -14.05679 -13.91738 -13.66863 -13.44580 -13.23070 -12.89801 -12.62564 -12.21650 -12.09544 -11.98973 -11.85916 -11.58420 -11.52377 -11.41269 -11.15958 -10.98654 -10.94279 -10.72895 -10.65774 -10.57565 -10.41976 -10.30759 -10.22245 -9.82858 -9.58833 -9.37471 -8.77202 -8.22508 -8.17167 -6.73105 -5.53262 -3.05823 3.36138 3.42214 3.46155 3.48599 3.49391 4.50682 4.63165 4.75226 4.79630 5.00638 5.19576 5.29113 5.37998 5.40987 5.49747 5.53131 5.55664 5.64681 5.68707 5.74325 5.78358 5.88871 5.97374 5.98322 6.02345 6.04240 6.06301 6.16574 6.26767 6.27547 6.31228 6.50739 6.53907 6.81311 6.92790 6.99277 7.22418 7.34043 7.49771 7.70274 7.93619 8.12732 8.34860 8.58890 8.96798 9.35735 9.93853 10.36931 11.36639 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018484 B = 0.005682 C = 0.005260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.430056 B = 4926.240677 C = 5321.480582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.173 3.827 3 N -0.575 5.575 4 C -0.244 4.244 5 H 0.071 0.929 6 C -0.006 4.006 7 N -0.900 5.900 8 Si 0.909 3.091 9 H -0.281 1.281 10 H -0.290 1.290 11 H -0.292 1.292 12 C 0.161 3.839 13 H 0.080 0.920 14 C -0.154 4.154 15 C 0.496 3.504 16 O -0.528 6.528 17 N -0.621 5.621 18 C 0.115 3.885 19 C -0.113 4.113 20 H 0.080 0.920 21 C -0.144 4.144 22 C -0.105 4.105 23 C -0.106 4.106 24 H 0.074 0.926 25 C -0.145 4.145 26 C 0.115 3.885 27 H 0.001 0.999 28 H 0.016 0.984 29 H 0.084 0.916 30 H 0.015 0.985 31 H 0.094 0.906 32 H 0.247 0.753 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.043 0.957 36 H 0.089 0.911 37 H 0.061 0.939 38 H 0.058 0.942 39 H 0.055 0.945 40 H 0.054 0.946 41 H 0.060 0.940 42 H 0.061 0.939 43 H 0.052 0.948 44 H 0.049 0.951 45 H 0.063 0.937 46 H 0.087 0.913 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.059 8.115 -13.221 17.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.049 3.951 3 N -0.294 5.294 4 C -0.373 4.373 5 H 0.089 0.911 6 C -0.202 4.202 7 N -0.548 5.548 8 Si 0.740 3.260 9 H -0.207 1.207 10 H -0.217 1.217 11 H -0.219 1.219 12 C 0.047 3.953 13 H 0.098 0.902 14 C -0.213 4.213 15 C 0.283 3.717 16 O -0.402 6.402 17 N -0.357 5.357 18 C -0.009 4.009 19 C -0.132 4.132 20 H 0.098 0.902 21 C -0.202 4.202 22 C -0.143 4.143 23 C -0.125 4.125 24 H 0.092 0.908 25 C -0.202 4.202 26 C -0.008 4.008 27 H 0.020 0.980 28 H 0.035 0.965 29 H 0.102 0.898 30 H 0.033 0.967 31 H 0.112 0.888 32 H 0.059 0.941 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.062 0.938 36 H 0.107 0.893 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.071 0.929 44 H 0.068 0.932 45 H 0.082 0.918 46 H 0.106 0.894 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 8.081 7.361 -12.828 16.853 hybrid contribution 0.139 0.541 0.787 0.965 sum 8.220 7.902 -12.041 16.583 Atomic orbital electron populations 1.22520 0.99564 0.98712 0.98820 1.20927 0.91583 0.83453 0.99147 1.44039 1.73607 1.11819 0.99980 1.19380 1.29488 1.02269 0.86187 0.91090 1.24828 0.99866 0.97409 0.98108 1.70332 1.41716 1.16858 1.25882 0.86092 0.77150 0.78980 0.83761 1.20661 1.21735 1.21870 1.20226 0.90341 0.96069 0.88618 0.90238 1.22273 0.99146 1.02584 0.97298 1.22971 0.85252 0.87041 0.76425 1.90596 1.73194 1.17962 1.58482 1.48423 1.22407 1.17398 1.47499 1.21749 0.97692 0.82153 0.99302 1.21586 0.95416 0.94744 1.01476 0.90178 1.21768 1.01740 0.96041 1.00674 1.21594 0.97241 0.96081 0.99390 1.21494 0.98112 0.95943 0.96947 0.90768 1.21809 1.02031 1.01377 0.94975 1.21476 0.83703 0.97023 0.98645 0.98031 0.96482 0.89756 0.96710 0.88848 0.94115 0.92183 0.91645 0.93795 0.89295 0.92061 0.92301 0.92620 0.92714 0.92099 0.92056 0.92854 0.93174 0.91841 0.89419 0.92599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.41 9.05 37.16 0.34 -3.07 16 2 C 0.17 4.57 4.32 -4.04 -0.02 4.56 16 3 N -0.57 -14.67 2.33 -166.98 -0.39 -15.06 16 4 C -0.24 -6.66 9.74 -15.06 -0.15 -6.81 16 5 H 0.07 1.87 7.71 -52.49 -0.40 1.47 16 6 C -0.01 -0.17 5.21 -17.43 -0.09 -0.26 16 7 N -0.90 -25.72 7.26 55.49 0.40 -25.32 16 8 Si 0.91 21.92 29.55 -169.99 -5.02 16.90 16 9 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 12 C 0.16 3.33 2.24 -69.08 -0.15 3.17 16 13 H 0.08 1.54 6.27 -51.93 -0.33 1.22 16 14 C -0.15 -2.76 7.94 37.16 0.30 -2.46 16 15 C 0.50 10.08 6.86 -10.98 -0.08 10.00 16 16 O -0.53 -12.89 13.89 5.56 0.08 -12.82 16 17 N -0.62 -9.70 2.32 -172.77 -0.40 -10.10 16 18 C 0.11 1.40 5.01 -3.71 -0.02 1.38 16 19 C -0.11 -1.20 2.53 -90.50 -0.23 -1.43 16 20 H 0.08 0.99 6.46 -51.93 -0.34 0.66 16 21 C -0.14 -1.23 9.20 37.16 0.34 -0.89 16 22 C -0.11 -1.04 4.72 -26.66 -0.13 -1.16 16 23 C -0.11 -1.22 3.21 -90.46 -0.29 -1.51 16 24 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 25 C -0.14 -1.92 8.59 37.16 0.32 -1.60 16 26 C 0.11 1.60 5.81 -3.71 -0.02 1.58 16 27 H 0.00 0.02 6.31 -51.93 -0.33 -0.31 16 28 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.08 2.32 6.00 -51.93 -0.31 2.00 16 30 H 0.01 0.39 6.05 -51.92 -0.31 0.08 16 31 H 0.09 2.80 5.97 -51.93 -0.31 2.49 16 32 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 33 H 0.06 1.18 6.31 -51.93 -0.33 0.85 16 34 H 0.06 1.18 8.13 -51.93 -0.42 0.76 16 35 H 0.04 0.64 7.18 -51.93 -0.37 0.26 16 36 H 0.09 1.12 5.06 -51.93 -0.26 0.85 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.05 0.42 8.14 -51.92 -0.42 -0.01 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.06 1.00 6.15 -51.93 -0.32 0.68 16 46 H 0.09 1.44 7.04 -51.93 -0.37 1.08 16 47 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 343.63 15.07 5.18 5.18 Total: -1.00 -30.84 343.63 -8.22 -39.05 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -8.19 Total: 0.67 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: 0.12 Total: 1.50 kcal Atomic # 7 Polarization: -50.09 SS G_CDS: -0.39 Total: -50.48 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: 0.08 Total: -12.82 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.84 -8.22 -39.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345362105.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.493 kcal (2) G-P(sol) polarization free energy of solvation -30.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds