Wall clock time and date at job start Tue Mar 31 2020 05:23:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46503 * 109.47463 * 2 1 4 4 C 1.36931 * 120.00057 * 85.56083 * 3 2 1 5 5 H 1.08003 * 120.00362 * 208.56820 * 4 3 2 6 6 C 1.38815 * 120.00086 * 28.57356 * 4 3 2 7 7 N 1.31621 * 119.99917 * 39.25940 * 6 4 3 8 8 Si 1.86799 * 120.00061 * 219.26364 * 6 4 3 9 9 H 1.48500 * 109.47112 * 179.97438 * 8 6 4 10 10 H 1.48497 * 109.47125 * 60.00025 * 8 6 4 11 11 H 1.48496 * 109.47368 * 299.99873 * 8 6 4 12 12 C 1.46497 * 119.99935 * 265.56737 * 3 2 1 13 13 H 1.08995 * 109.47105 * 179.97438 * 12 3 2 14 14 C 1.53002 * 109.47302 * 59.99560 * 12 3 2 15 15 C 1.50705 * 109.46872 * 299.99547 * 12 3 2 16 16 O 1.21279 * 120.00090 * 13.81556 * 15 12 3 17 17 N 1.34783 * 119.99940 * 193.81484 * 15 12 3 18 18 C 1.46926 * 120.62707 * 4.86317 * 17 15 12 19 19 C 1.53623 * 108.53900 * 126.36990 * 18 17 15 20 20 H 1.09009 * 109.42765 * 174.71967 * 19 18 17 21 21 C 1.53001 * 109.63519 * 294.85704 * 19 18 17 22 22 C 1.53036 * 109.24765 * 54.85429 * 19 18 17 23 23 C 1.53045 * 109.53577 * 298.51310 * 22 19 18 24 24 H 1.08998 * 109.49116 * 301.40709 * 23 22 19 25 25 C 1.52999 * 109.52169 * 181.33153 * 23 22 19 26 26 C 1.46921 * 120.62887 * 185.13984 * 17 15 12 27 27 H 1.09001 * 109.47037 * 300.00149 * 1 2 3 28 28 H 1.09002 * 109.46779 * 59.99859 * 1 2 3 29 29 H 1.08996 * 109.47714 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47374 * 239.99797 * 2 1 3 31 31 H 1.09009 * 109.46856 * 119.99718 * 2 1 3 32 32 H 0.97001 * 119.99755 * 6.03174 * 7 6 4 33 33 H 1.08995 * 109.46950 * 300.40735 * 14 12 3 34 34 H 1.08997 * 109.46842 * 60.40940 * 14 12 3 35 35 H 1.09000 * 109.46796 * 180.41105 * 14 12 3 36 36 H 1.08999 * 109.58253 * 246.19541 * 18 17 15 37 37 H 1.08998 * 109.58845 * 6.62432 * 18 17 15 38 38 H 1.08996 * 109.47003 * 179.83591 * 21 19 18 39 39 H 1.08999 * 109.46938 * 299.84320 * 21 19 18 40 40 H 1.09001 * 109.46534 * 59.83795 * 21 19 18 41 41 H 1.08993 * 109.46703 * 178.48785 * 22 19 18 42 42 H 1.09002 * 109.45129 * 58.51677 * 22 19 18 43 43 H 1.08990 * 109.47268 * 300.14099 * 25 23 22 44 44 H 1.09002 * 109.47002 * 60.14709 * 25 23 22 45 45 H 1.09005 * 109.46829 * 180.14155 * 25 23 22 46 46 H 1.09000 * 109.58826 * 353.37510 * 26 17 15 47 47 H 1.09004 * 109.58729 * 113.65507 * 26 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1601 2.0573 1.1823 5 1 2.0627 3.1327 1.2045 6 6 2.4291 1.3605 2.3524 7 7 3.2575 0.3379 2.3337 8 14 1.6152 1.8742 3.9534 9 1 2.0645 0.9761 5.0474 10 1 0.1400 1.7805 3.8111 11 1 1.9936 3.2738 4.2744 12 6 2.3550 2.0391 -1.2649 13 1 2.6973 3.0547 -1.0664 14 6 1.1160 2.0851 -2.1614 15 6 3.4479 1.2665 -1.9576 16 8 3.7279 0.1465 -1.5860 17 7 4.1142 1.8202 -2.9901 18 6 3.8608 3.2128 -3.3839 19 6 5.2005 3.9641 -3.4115 20 1 5.0426 4.9733 -3.7921 21 6 5.7790 4.0358 -1.9969 22 6 6.1771 3.2206 -4.3256 23 6 6.4249 1.8147 -3.7741 24 1 6.8256 1.8860 -2.7629 25 6 7.4267 1.0833 -4.6699 26 6 5.1032 1.0407 -3.7470 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.7469 0.1249 1.5238 33 1 0.7691 1.0699 -2.3541 34 1 0.3281 2.6501 -1.6635 35 1 1.3684 2.5681 -3.1054 36 1 3.4056 3.2355 -4.3740 37 1 3.1925 3.6811 -2.6613 38 1 6.7307 4.5667 -2.0200 39 1 5.0831 4.5655 -1.3462 40 1 5.9352 3.0263 -1.6167 41 1 7.1203 3.7651 -4.3690 42 1 5.7532 3.1481 -5.3272 43 1 7.0263 1.0133 -5.6811 44 1 8.3670 1.6344 -4.6887 45 1 7.6007 0.0813 -4.2777 46 1 5.2548 0.0754 -3.2641 47 1 4.7460 0.8877 -4.7655 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345362109.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:30 Heat of formation + Delta-G solvation = -25.633996 kcal Electronic energy + Delta-G solvation = -24640.612534 eV Core-core repulsion = 21437.666845 eV Total energy + Delta-G solvation = -3202.945689 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.12208 -37.86172 -35.72750 -33.80381 -32.84116 -32.01796 -30.40208 -28.20466 -26.88268 -26.72923 -25.49231 -23.92948 -22.55363 -21.60522 -20.68193 -19.29760 -18.15934 -17.28285 -16.42797 -15.51754 -15.24061 -14.83111 -14.39992 -14.06470 -14.00732 -13.81338 -13.52288 -13.29720 -13.05296 -12.77045 -12.38609 -12.25358 -11.97051 -11.90593 -11.82596 -11.70129 -11.57452 -11.42859 -11.13137 -10.99294 -10.72443 -10.63344 -10.61663 -10.47373 -10.20662 -10.11975 -10.01152 -9.73030 -9.52218 -8.74982 -8.20439 -8.13028 -6.80515 -6.06211 -3.15098 3.37615 3.45269 3.52760 3.59833 3.75937 4.60695 4.65424 4.75394 4.80901 4.97666 5.16600 5.18112 5.31263 5.39322 5.47508 5.52832 5.57510 5.62726 5.65678 5.69196 5.73621 5.88198 5.90156 5.93025 5.97168 6.03509 6.08669 6.14948 6.17931 6.27140 6.30215 6.37802 6.46286 6.53922 6.61882 6.65000 6.80072 6.91083 7.03703 7.30273 7.61140 7.91726 8.13487 8.63048 8.93404 9.19184 9.90838 10.36045 11.16115 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021190 B = 0.005404 C = 0.005148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.072412 B = 5180.166228 C = 5437.215206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.134 3.866 3 N -0.561 5.561 4 C -0.375 4.375 5 H 0.054 0.946 6 C -0.008 4.008 7 N -0.879 5.879 8 Si 1.048 2.952 9 H -0.287 1.287 10 H -0.292 1.292 11 H -0.293 1.293 12 C 0.153 3.847 13 H 0.083 0.917 14 C -0.154 4.154 15 C 0.496 3.504 16 O -0.529 6.529 17 N -0.621 5.621 18 C 0.114 3.886 19 C -0.107 4.107 20 H 0.077 0.923 21 C -0.147 4.147 22 C -0.106 4.106 23 C -0.110 4.110 24 H 0.078 0.922 25 C -0.143 4.143 26 C 0.116 3.884 27 H 0.051 0.949 28 H 0.039 0.961 29 H 0.032 0.968 30 H 0.048 0.952 31 H 0.068 0.932 32 H 0.277 0.723 33 H 0.055 0.945 34 H 0.064 0.936 35 H 0.046 0.954 36 H 0.061 0.939 37 H 0.088 0.912 38 H 0.050 0.950 39 H 0.056 0.944 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.060 0.940 43 H 0.053 0.947 44 H 0.054 0.946 45 H 0.056 0.944 46 H 0.086 0.914 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.333 6.494 -15.069 16.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.009 3.991 3 N -0.280 5.280 4 C -0.503 4.503 5 H 0.072 0.928 6 C -0.215 4.215 7 N -0.515 5.515 8 Si 0.877 3.123 9 H -0.213 1.213 10 H -0.220 1.220 11 H -0.220 1.220 12 C 0.041 3.959 13 H 0.100 0.900 14 C -0.213 4.213 15 C 0.283 3.717 16 O -0.403 6.403 17 N -0.357 5.357 18 C -0.010 4.010 19 C -0.127 4.127 20 H 0.095 0.905 21 C -0.205 4.205 22 C -0.143 4.143 23 C -0.129 4.129 24 H 0.096 0.904 25 C -0.201 4.201 26 C -0.007 4.007 27 H 0.070 0.930 28 H 0.058 0.942 29 H 0.051 0.949 30 H 0.066 0.934 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.065 0.935 36 H 0.079 0.921 37 H 0.107 0.893 38 H 0.069 0.931 39 H 0.075 0.925 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.072 0.928 44 H 0.073 0.927 45 H 0.075 0.925 46 H 0.105 0.895 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.293 5.449 -13.182 14.639 hybrid contribution 0.334 0.581 -1.717 1.844 sum 3.627 6.031 -14.899 16.478 Atomic orbital electron populations 1.22340 1.00267 0.98698 1.00929 1.20931 0.90687 0.85979 1.01550 1.43947 1.71684 1.12239 1.00174 1.19739 1.51812 0.92834 0.85883 0.92822 1.25687 0.96565 0.98310 1.00907 1.70697 1.18601 1.31636 1.30528 0.83802 0.76614 0.75391 0.76448 1.21290 1.21962 1.21973 1.20642 0.90575 0.96397 0.88296 0.89954 1.22268 0.98913 1.01920 0.98225 1.23037 0.83074 0.87724 0.77845 1.90595 1.66447 1.20364 1.62930 1.48505 1.41406 1.12574 1.33243 1.21828 0.96576 0.82064 1.00514 1.21584 0.95529 0.98841 0.96702 0.90483 1.21837 1.00345 1.02654 0.95626 1.21578 0.99013 0.95358 0.98376 1.21550 0.95753 0.95158 1.00461 0.90403 1.21757 0.98580 1.00417 0.99370 1.21495 0.87626 0.96069 0.95558 0.92967 0.94200 0.94864 0.93413 0.91381 0.91189 0.92639 0.91721 0.93536 0.92086 0.89346 0.93077 0.92483 0.91908 0.92047 0.92096 0.92782 0.92657 0.92510 0.89513 0.92620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.54 10.00 37.15 0.37 -3.16 16 2 C 0.13 3.37 4.61 -4.04 -0.02 3.35 16 3 N -0.56 -14.15 2.14 -166.98 -0.36 -14.51 16 4 C -0.37 -10.41 9.20 -15.06 -0.14 -10.55 16 5 H 0.05 1.49 8.05 -52.48 -0.42 1.07 16 6 C -0.01 -0.23 4.58 -17.43 -0.08 -0.31 16 7 N -0.88 -27.02 12.15 55.49 0.67 -26.35 16 8 Si 1.05 25.39 30.05 -169.99 -5.11 20.28 16 9 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 12 C 0.15 3.19 2.27 -69.08 -0.16 3.03 16 13 H 0.08 1.69 6.44 -51.93 -0.33 1.35 16 14 C -0.15 -2.65 7.99 37.16 0.30 -2.35 16 15 C 0.50 10.27 6.85 -10.98 -0.08 10.20 16 16 O -0.53 -13.17 13.48 5.56 0.07 -13.10 16 17 N -0.62 -9.95 2.40 -172.51 -0.41 -10.36 16 18 C 0.11 1.44 4.75 -3.49 -0.02 1.42 16 19 C -0.11 -1.20 3.21 -90.28 -0.29 -1.49 16 20 H 0.08 0.72 8.14 -51.92 -0.42 0.29 16 21 C -0.15 -1.95 8.71 37.16 0.32 -1.63 16 22 C -0.11 -1.09 4.71 -26.69 -0.13 -1.21 16 23 C -0.11 -1.32 2.53 -90.50 -0.23 -1.55 16 24 H 0.08 1.10 6.34 -51.93 -0.33 0.78 16 25 C -0.14 -1.42 9.20 37.16 0.34 -1.08 16 26 C 0.12 1.66 5.72 -3.72 -0.02 1.64 16 27 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 28 H 0.04 0.78 5.92 -51.93 -0.31 0.47 16 29 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.05 1.21 5.97 -51.93 -0.31 0.90 16 31 H 0.07 1.95 5.52 -51.92 -0.29 1.67 16 32 H 0.28 8.94 7.93 -40.82 -0.32 8.61 16 33 H 0.05 1.00 6.47 -51.93 -0.34 0.67 16 34 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.05 0.65 6.80 -51.93 -0.35 0.30 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.09 1.16 5.20 -51.93 -0.27 0.89 16 38 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.06 1.02 5.97 -51.93 -0.31 0.71 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.09 1.47 7.00 -51.93 -0.36 1.11 16 47 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 349.31 15.07 5.26 5.26 Total: -1.00 -31.92 349.31 -7.92 -39.85 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -8.24 Total: 2.62 kcal Atomic # 6 Polarization: -3.87 SS G_CDS: 0.18 Total: -3.69 kcal Atomic # 7 Polarization: -51.13 SS G_CDS: -0.10 Total: -51.22 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: 0.07 Total: -13.10 kcal Atomic # 14 Polarization: 25.39 SS G_CDS: -5.11 Total: 20.28 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.92 -7.92 -39.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345362109.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.211 kcal (2) G-P(sol) polarization free energy of solvation -31.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds