Wall clock time and date at job start Tue Mar 31 2020 06:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46890 * 109.47004 * 2 1 4 4 C 1.46897 * 111.00110 * 60.14076 * 3 2 1 5 5 C 1.53000 * 109.47518 * 66.04728 * 4 3 2 6 6 C 1.52994 * 109.47614 * 179.97438 * 5 4 3 7 7 C 1.50702 * 109.47426 * 179.97438 * 6 5 4 8 8 H 1.07999 * 119.99812 * 0.02562 * 7 6 5 9 9 C 1.37872 * 120.00087 * 180.02562 * 7 6 5 10 10 N 1.31519 * 120.00010 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99950 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47188 * 359.97438 * 11 9 7 13 13 H 1.48503 * 109.47160 * 119.99873 * 11 9 7 14 14 H 1.48504 * 109.47137 * 239.99896 * 11 9 7 15 15 C 1.46900 * 110.99905 * 296.18633 * 3 2 1 16 16 C 1.53001 * 109.47319 * 288.29649 * 15 3 2 17 17 N 1.46894 * 109.47129 * 185.32998 * 16 15 3 18 18 C 1.48007 * 110.99959 * 298.71775 * 17 16 15 19 19 C 1.50442 * 112.82542 * 191.34745 * 18 17 16 20 20 C 1.54314 * 108.49785 * 93.72837 * 19 18 17 21 21 C 1.45878 * 112.18474 * 281.45975 * 20 19 18 22 22 C 1.54304 * 112.18345 * 61.12484 * 21 20 19 23 23 C 1.48006 * 111.00105 * 170.00107 * 17 16 15 24 24 H 1.08999 * 109.47393 * 301.18023 * 1 2 3 25 25 H 1.08995 * 109.47084 * 61.18614 * 1 2 3 26 26 H 1.09007 * 109.46966 * 181.17615 * 1 2 3 27 27 H 1.08996 * 109.46958 * 239.99483 * 2 1 3 28 28 H 1.09003 * 109.46525 * 120.00008 * 2 1 3 29 29 H 1.09004 * 109.47390 * 186.04800 * 4 3 2 30 30 H 1.09001 * 109.47454 * 306.04641 * 4 3 2 31 31 H 1.09004 * 109.46848 * 300.00403 * 5 4 3 32 32 H 1.09001 * 109.46829 * 59.99531 * 5 4 3 33 33 H 1.08996 * 109.47534 * 300.00611 * 6 5 4 34 34 H 1.09009 * 109.46840 * 60.00177 * 6 5 4 35 35 H 0.97004 * 119.99794 * 180.02562 * 10 9 7 36 36 H 1.09000 * 109.47105 * 48.29753 * 15 3 2 37 37 H 1.09003 * 109.47428 * 168.29416 * 15 3 2 38 38 H 1.09003 * 109.46623 * 305.33134 * 16 15 3 39 39 H 1.08994 * 109.46843 * 65.32574 * 16 15 3 40 40 H 1.08997 * 108.81028 * 312.20834 * 18 17 16 41 41 H 1.08995 * 108.81247 * 70.48475 * 18 17 16 42 42 H 1.08996 * 109.63613 * 334.02777 * 19 18 17 43 43 H 1.08997 * 109.63241 * 213.43046 * 19 18 17 44 44 H 1.09005 * 108.94147 * 160.76515 * 20 19 18 45 45 H 1.09000 * 108.87178 * 42.11129 * 20 19 18 46 46 H 1.08996 * 108.93717 * 300.42231 * 21 20 19 47 47 H 1.09006 * 108.93815 * 181.82102 * 21 20 19 48 48 H 1.08998 * 109.63497 * 161.75898 * 22 21 20 49 49 H 1.08997 * 109.63661 * 41.16399 * 22 21 20 50 50 H 1.08994 * 108.81303 * 205.70184 * 23 17 16 51 51 H 1.09005 * 108.80606 * 324.08469 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.5514 2.1088 1.1893 5 6 2.1859 1.4985 2.4407 6 6 1.6988 2.2529 3.6793 7 6 2.3233 1.6513 4.9119 8 1 3.0003 0.8149 4.8208 9 6 2.0303 2.1688 6.1558 10 7 1.2054 3.1871 6.2667 11 14 2.8050 1.4236 7.6835 12 1 3.6886 0.2964 7.2909 13 1 3.6046 2.4579 8.3878 14 1 1.7372 0.9236 8.5863 15 6 1.6245 2.0829 -1.2307 16 6 2.4376 1.5409 -2.4080 17 7 2.1357 2.3242 -3.6134 18 6 0.7032 2.2178 -3.9701 19 6 0.3989 2.7722 -5.3351 20 6 0.4520 1.6163 -6.3560 21 6 1.8205 1.2626 -6.7169 22 6 2.6389 0.7842 -5.4994 23 6 3.0709 1.9904 -4.7109 24 1 -0.3634 0.5320 0.8792 25 1 -0.3633 0.4953 -0.9004 26 1 -0.3633 -1.0275 0.0211 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 1.8370 3.1580 1.1120 30 1 0.4663 2.0318 1.2578 31 1 1.9004 0.4494 2.5180 32 1 3.2711 1.5756 2.3722 33 1 1.9846 3.3019 3.6018 34 1 0.6135 2.1762 3.7480 35 1 0.9996 3.5514 7.1419 36 1 0.5630 1.9194 -1.4163 37 1 1.8135 3.1507 -1.1195 38 1 3.5010 1.6183 -2.1813 39 1 2.1776 0.4963 -2.5788 40 1 0.4116 1.1679 -3.9442 41 1 0.1156 2.7620 -3.2308 42 1 1.1402 3.5269 -5.5976 43 1 -0.5964 3.2165 -5.3364 44 1 -0.0854 1.9144 -7.2564 45 1 -0.0373 0.7427 -5.9253 46 1 2.3088 2.1352 -7.1507 47 1 1.7956 0.4667 -7.4613 48 1 3.5171 0.2362 -5.8408 49 1 2.0218 0.1394 -4.8737 50 1 3.1411 2.8442 -5.3848 51 1 4.0560 1.7966 -4.2864 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000347301860.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:25 Heat of formation + Delta-G solvation = -15.208072 kcal Electronic energy + Delta-G solvation = -23023.581972 eV Core-core repulsion = 19956.921480 eV Total energy + Delta-G solvation = -3066.660492 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.72771 -38.13529 -34.96756 -33.62387 -32.42035 -31.50932 -30.46419 -28.65067 -26.51357 -25.42282 -24.89255 -23.84857 -22.43816 -20.84907 -20.45828 -19.53823 -19.17508 -16.73766 -16.26119 -16.14940 -15.68709 -15.42270 -14.89198 -14.44304 -14.32504 -13.99179 -13.78350 -13.36565 -13.28625 -13.12973 -12.92046 -12.54623 -12.31571 -12.27039 -12.01932 -11.59011 -11.50997 -11.36039 -11.20152 -11.09314 -11.04581 -10.88404 -10.82856 -10.79271 -10.51774 -10.48911 -10.38827 -10.34542 -9.51400 -9.27241 -8.99205 -8.32080 -8.30069 -7.91787 -5.95600 -3.97221 3.33867 3.41129 3.45748 3.58021 4.31838 4.34219 4.47250 4.51961 4.62985 4.82078 4.92342 5.04095 5.09514 5.17559 5.20673 5.25856 5.37435 5.40291 5.41031 5.44969 5.51347 5.56866 5.61344 5.67345 5.74632 5.76187 5.80276 5.82867 5.85879 5.93564 5.95172 6.00437 6.03983 6.06861 6.11266 6.24678 6.42264 6.44177 6.78182 6.85122 6.98746 7.02609 7.19817 7.46378 7.48621 7.74315 7.89752 8.05660 8.49298 9.10389 9.66560 11.15929 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.040192 B = 0.002558 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.494180 B =10942.154826 C =10994.178286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.047 3.953 3 N -0.536 5.536 4 C 0.054 3.946 5 C -0.103 4.103 6 C 0.021 3.979 7 C -0.516 4.516 8 H 0.055 0.945 9 C 0.055 3.945 10 N -0.897 5.897 11 Si 0.891 3.109 12 H -0.273 1.273 13 H -0.284 1.284 14 H -0.285 1.285 15 C 0.053 3.947 16 C 0.067 3.933 17 N -0.549 5.549 18 C 0.062 3.938 19 C -0.121 4.121 20 C -0.122 4.122 21 C -0.117 4.117 22 C -0.150 4.150 23 C 0.061 3.939 24 H 0.065 0.935 25 H 0.050 0.950 26 H 0.056 0.944 27 H 0.065 0.935 28 H 0.081 0.919 29 H 0.068 0.932 30 H 0.033 0.967 31 H 0.046 0.954 32 H 0.054 0.946 33 H 0.015 0.985 34 H 0.012 0.988 35 H 0.259 0.741 36 H 0.035 0.965 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.028 0.972 40 H 0.031 0.969 41 H 0.071 0.929 42 H 0.075 0.925 43 H 0.069 0.931 44 H 0.059 0.941 45 H 0.057 0.943 46 H 0.062 0.938 47 H 0.056 0.944 48 H 0.067 0.933 49 H 0.063 0.937 50 H 0.072 0.928 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.893 -3.967 -26.552 26.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.081 4.081 3 N -0.259 5.259 4 C -0.073 4.073 5 C -0.141 4.141 6 C -0.016 4.016 7 C -0.554 4.554 8 H 0.073 0.927 9 C -0.146 4.146 10 N -0.537 5.537 11 Si 0.719 3.281 12 H -0.197 1.197 13 H -0.210 1.210 14 H -0.211 1.211 15 C -0.076 4.076 16 C -0.061 4.061 17 N -0.274 5.274 18 C -0.065 4.065 19 C -0.159 4.159 20 C -0.159 4.159 21 C -0.154 4.154 22 C -0.189 4.189 23 C -0.067 4.067 24 H 0.084 0.916 25 H 0.069 0.931 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.100 0.900 29 H 0.086 0.914 30 H 0.051 0.949 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.034 0.966 34 H 0.031 0.969 35 H 0.069 0.931 36 H 0.053 0.947 37 H 0.097 0.903 38 H 0.100 0.900 39 H 0.047 0.953 40 H 0.049 0.951 41 H 0.090 0.910 42 H 0.094 0.906 43 H 0.088 0.912 44 H 0.078 0.922 45 H 0.076 0.924 46 H 0.080 0.920 47 H 0.075 0.925 48 H 0.086 0.914 49 H 0.081 0.919 50 H 0.091 0.909 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.380 -3.394 -26.314 26.535 hybrid contribution -0.764 -1.212 0.705 1.597 sum -1.144 -4.607 -25.608 26.045 Atomic orbital electron populations 1.22416 0.98727 1.01985 1.02066 1.22172 0.92651 0.90869 1.02376 1.62194 1.59608 1.02138 1.02008 1.22338 0.97557 0.97735 0.89696 1.21629 0.99908 0.99201 0.93402 1.19075 0.96241 0.95467 0.90830 1.21296 1.26858 1.15853 0.91390 0.92665 1.25034 0.95319 0.95109 0.99141 1.69982 1.35495 1.24480 1.23701 0.86555 0.79151 0.79190 0.83224 1.19742 1.21029 1.21101 1.22117 0.96799 0.99159 0.89482 1.22065 1.01086 0.94194 0.88763 1.61802 1.03268 1.57415 1.04917 1.21794 0.88582 0.99156 0.96995 1.21442 1.02107 0.98130 0.94236 1.20612 0.97314 0.98598 0.99380 1.20543 0.96191 1.01019 0.97656 1.21932 1.00288 0.99069 0.97585 1.21873 0.95506 0.96489 0.92785 0.91565 0.93127 0.92516 0.91700 0.90038 0.91376 0.94857 0.93530 0.92700 0.96634 0.96921 0.93143 0.94740 0.90322 0.89975 0.95348 0.95076 0.91024 0.90630 0.91206 0.92211 0.92405 0.91973 0.92505 0.91439 0.91852 0.90933 0.91300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.52 9.28 37.16 0.34 -2.17 16 2 C 0.05 0.66 5.69 -3.83 -0.02 0.63 16 3 N -0.54 -8.12 4.67 -234.63 -1.10 -9.22 16 4 C 0.05 0.96 4.71 -3.83 -0.02 0.94 16 5 C -0.10 -2.19 5.08 -26.73 -0.14 -2.33 16 6 C 0.02 0.57 4.97 -27.89 -0.14 0.43 16 7 C -0.52 -14.90 9.11 -34.44 -0.31 -15.21 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 9 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 10 N -0.90 -27.41 13.29 55.43 0.74 -26.67 16 11 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 12 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 13 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 14 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 15 C 0.05 0.69 4.49 -3.82 -0.02 0.67 16 16 C 0.07 0.76 4.80 -3.83 -0.02 0.75 16 17 N -0.55 -5.64 4.71 -235.90 -1.11 -6.75 16 18 C 0.06 0.58 4.33 -4.49 -0.02 0.56 16 19 C -0.12 -0.94 5.63 -27.32 -0.15 -1.10 16 20 C -0.12 -0.85 5.30 -29.41 -0.16 -1.01 16 21 C -0.12 -0.79 5.30 -29.42 -0.16 -0.95 16 22 C -0.15 -1.15 5.60 -27.32 -0.15 -1.30 16 23 C 0.06 0.53 5.16 -4.49 -0.02 0.51 16 24 H 0.07 0.99 6.22 -51.93 -0.32 0.66 16 25 H 0.05 0.62 6.32 -51.93 -0.33 0.29 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.06 0.80 6.66 -51.93 -0.35 0.46 16 28 H 0.08 1.23 6.46 -51.93 -0.34 0.89 16 29 H 0.07 1.23 7.86 -51.93 -0.41 0.82 16 30 H 0.03 0.60 5.98 -51.93 -0.31 0.29 16 31 H 0.05 0.97 6.55 -51.93 -0.34 0.63 16 32 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.01 0.35 8.14 -51.92 -0.42 -0.08 16 35 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 36 H 0.03 0.44 4.77 -51.93 -0.25 0.19 16 37 H 0.08 1.10 7.82 -51.93 -0.41 0.69 16 38 H 0.08 1.00 7.80 -51.93 -0.40 0.60 16 39 H 0.03 0.33 6.57 -51.93 -0.34 -0.02 16 40 H 0.03 0.30 6.44 -51.93 -0.33 -0.03 16 41 H 0.07 0.72 7.03 -51.93 -0.37 0.36 16 42 H 0.08 0.62 7.08 -51.93 -0.37 0.25 16 43 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.06 0.43 7.51 -51.93 -0.39 0.04 16 46 H 0.06 0.41 7.52 -51.93 -0.39 0.02 16 47 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 48 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 49 H 0.06 0.56 6.74 -51.93 -0.35 0.21 16 50 H 0.07 0.60 6.59 -51.93 -0.34 0.26 16 51 H 0.07 0.60 7.64 -51.93 -0.40 0.20 16 LS Contribution 369.15 15.07 5.56 5.56 Total: -1.00 -29.79 369.15 -11.66 -41.44 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -9.65 Total: -3.28 kcal Atomic # 6 Polarization: -17.00 SS G_CDS: -1.08 Total: -18.08 kcal Atomic # 7 Polarization: -41.17 SS G_CDS: -1.47 Total: -42.64 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -29.79 -11.66 -41.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347301860.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.236 kcal (2) G-P(sol) polarization free energy of solvation -29.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds