Wall clock time and date at job start Tue Mar 31 2020 06:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46890 * 109.47004 * 2 1 4 4 C 1.46897 * 111.00110 * 60.14076 * 3 2 1 5 5 C 1.53000 * 109.47518 * 66.04728 * 4 3 2 6 6 C 1.52994 * 109.47614 * 179.97438 * 5 4 3 7 7 C 1.50702 * 109.47426 * 179.97438 * 6 5 4 8 8 H 1.07999 * 119.99812 * 0.02562 * 7 6 5 9 9 C 1.37872 * 120.00087 * 180.02562 * 7 6 5 10 10 N 1.31519 * 120.00010 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99950 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47188 * 359.97438 * 11 9 7 13 13 H 1.48503 * 109.47160 * 119.99873 * 11 9 7 14 14 H 1.48504 * 109.47137 * 239.99896 * 11 9 7 15 15 C 1.46900 * 110.99905 * 296.18633 * 3 2 1 16 16 C 1.53001 * 109.47319 * 288.29649 * 15 3 2 17 17 N 1.46894 * 109.47129 * 185.32998 * 16 15 3 18 18 C 1.48007 * 110.99959 * 298.71775 * 17 16 15 19 19 C 1.50442 * 112.82542 * 191.34745 * 18 17 16 20 20 C 1.54314 * 108.49785 * 93.72837 * 19 18 17 21 21 C 1.45878 * 112.18474 * 281.45975 * 20 19 18 22 22 C 1.54304 * 112.18345 * 61.12484 * 21 20 19 23 23 C 1.48006 * 111.00105 * 170.00107 * 17 16 15 24 24 H 1.08999 * 109.47393 * 301.18023 * 1 2 3 25 25 H 1.08995 * 109.47084 * 61.18614 * 1 2 3 26 26 H 1.09007 * 109.46966 * 181.17615 * 1 2 3 27 27 H 1.08996 * 109.46958 * 239.99483 * 2 1 3 28 28 H 1.09003 * 109.46525 * 120.00008 * 2 1 3 29 29 H 1.09004 * 109.47390 * 186.04800 * 4 3 2 30 30 H 1.09001 * 109.47454 * 306.04641 * 4 3 2 31 31 H 1.09004 * 109.46848 * 300.00403 * 5 4 3 32 32 H 1.09001 * 109.46829 * 59.99531 * 5 4 3 33 33 H 1.08996 * 109.47534 * 300.00611 * 6 5 4 34 34 H 1.09009 * 109.46840 * 60.00177 * 6 5 4 35 35 H 0.97004 * 119.99794 * 180.02562 * 10 9 7 36 36 H 1.09000 * 109.47105 * 48.29753 * 15 3 2 37 37 H 1.09003 * 109.47428 * 168.29416 * 15 3 2 38 38 H 1.09003 * 109.46623 * 305.33134 * 16 15 3 39 39 H 1.08994 * 109.46843 * 65.32574 * 16 15 3 40 40 H 1.08997 * 108.81028 * 312.20834 * 18 17 16 41 41 H 1.08995 * 108.81247 * 70.48475 * 18 17 16 42 42 H 1.08996 * 109.63613 * 334.02777 * 19 18 17 43 43 H 1.08997 * 109.63241 * 213.43046 * 19 18 17 44 44 H 1.09005 * 108.94147 * 160.76515 * 20 19 18 45 45 H 1.09000 * 108.87178 * 42.11129 * 20 19 18 46 46 H 1.08996 * 108.93717 * 300.42231 * 21 20 19 47 47 H 1.09006 * 108.93815 * 181.82102 * 21 20 19 48 48 H 1.08998 * 109.63497 * 161.75898 * 22 21 20 49 49 H 1.08997 * 109.63661 * 41.16399 * 22 21 20 50 50 H 1.08994 * 108.81303 * 205.70184 * 23 17 16 51 51 H 1.09005 * 108.80606 * 324.08469 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.5514 2.1088 1.1893 5 6 2.1859 1.4985 2.4407 6 6 1.6988 2.2529 3.6793 7 6 2.3233 1.6513 4.9119 8 1 3.0003 0.8149 4.8208 9 6 2.0303 2.1688 6.1558 10 7 1.2054 3.1871 6.2667 11 14 2.8050 1.4236 7.6835 12 1 3.6886 0.2964 7.2909 13 1 3.6046 2.4579 8.3878 14 1 1.7372 0.9236 8.5863 15 6 1.6245 2.0829 -1.2307 16 6 2.4376 1.5409 -2.4080 17 7 2.1357 2.3242 -3.6134 18 6 0.7032 2.2178 -3.9701 19 6 0.3989 2.7722 -5.3351 20 6 0.4520 1.6163 -6.3560 21 6 1.8205 1.2626 -6.7169 22 6 2.6389 0.7842 -5.4994 23 6 3.0709 1.9904 -4.7109 24 1 -0.3634 0.5320 0.8792 25 1 -0.3633 0.4953 -0.9004 26 1 -0.3633 -1.0275 0.0211 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 1.8370 3.1580 1.1120 30 1 0.4663 2.0318 1.2578 31 1 1.9004 0.4494 2.5180 32 1 3.2711 1.5756 2.3722 33 1 1.9846 3.3019 3.6018 34 1 0.6135 2.1762 3.7480 35 1 0.9996 3.5514 7.1419 36 1 0.5630 1.9194 -1.4163 37 1 1.8135 3.1507 -1.1195 38 1 3.5010 1.6183 -2.1813 39 1 2.1776 0.4963 -2.5788 40 1 0.4116 1.1679 -3.9442 41 1 0.1156 2.7620 -3.2308 42 1 1.1402 3.5269 -5.5976 43 1 -0.5964 3.2165 -5.3364 44 1 -0.0854 1.9144 -7.2564 45 1 -0.0373 0.7427 -5.9253 46 1 2.3088 2.1352 -7.1507 47 1 1.7956 0.4667 -7.4613 48 1 3.5171 0.2362 -5.8408 49 1 2.0218 0.1394 -4.8737 50 1 3.1411 2.8442 -5.3848 51 1 4.0560 1.7966 -4.2864 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000347301860.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:24 Heat of formation + Delta-G solvation = -32.771115 kcal Electronic energy + Delta-G solvation = -23024.343562 eV Core-core repulsion = 19956.921480 eV Total energy + Delta-G solvation = -3067.422083 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.50779 -39.28910 -36.06198 -35.35101 -33.42065 -33.04793 -31.48768 -29.99387 -27.93923 -26.43137 -25.71591 -25.23887 -23.86895 -22.00532 -21.37573 -20.69859 -20.20768 -18.47057 -17.52845 -17.20241 -16.69445 -16.55153 -16.33476 -15.81839 -15.34376 -14.98957 -14.62441 -14.55400 -14.44177 -14.16632 -13.95592 -13.93532 -13.48053 -13.29127 -13.13620 -13.04770 -12.97499 -12.63727 -12.57795 -12.30292 -12.22548 -12.11216 -12.02909 -11.77588 -11.66674 -11.50227 -11.43628 -11.32902 -11.23223 -11.10745 -10.99146 -10.54773 -9.23146 -9.03868 -8.19726 -6.30541 1.39818 1.40274 1.53925 2.41005 2.67167 3.13279 3.27798 3.75021 3.84757 3.93668 3.99862 4.05833 4.19142 4.23180 4.30438 4.35651 4.37997 4.41835 4.44995 4.51062 4.55667 4.63714 4.73218 4.75234 4.77241 4.83248 4.87945 4.92953 5.03408 5.03767 5.05853 5.09669 5.12993 5.17657 5.23243 5.25146 5.27255 5.33488 5.36502 5.40317 5.46980 5.54340 5.76157 5.87176 6.09083 6.14656 6.26468 6.29144 6.30918 6.86499 7.38575 8.92490 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.040192 B = 0.002558 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.494180 B =10942.154826 C =10994.178286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.047 3.953 3 N -0.541 5.541 4 C 0.066 3.934 5 C -0.087 4.087 6 C 0.026 3.974 7 C -0.540 4.540 8 H 0.058 0.942 9 C -0.003 4.003 10 N -0.934 5.934 11 Si 0.966 3.034 12 H -0.262 1.262 13 H -0.277 1.277 14 H -0.277 1.277 15 C 0.059 3.941 16 C 0.078 3.922 17 N -0.558 5.558 18 C 0.064 3.936 19 C -0.118 4.118 20 C -0.119 4.119 21 C -0.115 4.115 22 C -0.145 4.145 23 C 0.061 3.939 24 H 0.043 0.957 25 H 0.059 0.941 26 H 0.072 0.928 27 H 0.085 0.915 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.031 0.969 31 H 0.050 0.950 32 H 0.049 0.951 33 H -0.010 1.010 34 H -0.011 1.011 35 H 0.263 0.737 36 H 0.040 0.960 37 H 0.067 0.933 38 H 0.074 0.926 39 H 0.032 0.968 40 H 0.028 0.972 41 H 0.061 0.939 42 H 0.072 0.928 43 H 0.077 0.923 44 H 0.070 0.930 45 H 0.053 0.947 46 H 0.066 0.934 47 H 0.064 0.936 48 H 0.076 0.924 49 H 0.051 0.949 50 H 0.077 0.923 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.421 -5.154 -27.785 28.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.081 4.081 3 N -0.264 5.264 4 C -0.062 4.062 5 C -0.124 4.124 6 C -0.011 4.011 7 C -0.578 4.578 8 H 0.077 0.923 9 C -0.200 4.200 10 N -0.575 5.575 11 Si 0.790 3.210 12 H -0.186 1.186 13 H -0.203 1.203 14 H -0.203 1.203 15 C -0.069 4.069 16 C -0.050 4.050 17 N -0.284 5.284 18 C -0.063 4.063 19 C -0.156 4.156 20 C -0.156 4.156 21 C -0.153 4.153 22 C -0.184 4.184 23 C -0.066 4.066 24 H 0.062 0.938 25 H 0.078 0.922 26 H 0.091 0.909 27 H 0.104 0.896 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.049 0.951 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.009 0.991 34 H 0.008 0.992 35 H 0.072 0.928 36 H 0.058 0.942 37 H 0.086 0.914 38 H 0.093 0.907 39 H 0.050 0.950 40 H 0.047 0.953 41 H 0.080 0.920 42 H 0.090 0.910 43 H 0.095 0.905 44 H 0.089 0.911 45 H 0.071 0.929 46 H 0.085 0.915 47 H 0.083 0.917 48 H 0.094 0.906 49 H 0.070 0.930 50 H 0.096 0.904 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.096 -4.589 -27.573 27.952 hybrid contribution -0.928 -0.814 1.048 1.619 sum -0.833 -5.404 -26.525 27.083 Atomic orbital electron populations 1.22343 0.98009 1.02800 1.01390 1.22213 0.93232 0.89883 1.02731 1.62125 1.59842 1.02755 1.01710 1.22038 0.97057 0.97393 0.89667 1.21359 0.99478 0.98787 0.92824 1.18968 0.94674 0.94602 0.92895 1.21709 1.27213 1.16203 0.92646 0.92334 1.26002 0.95721 0.95462 1.02821 1.70111 1.36724 1.25806 1.24835 0.85389 0.78389 0.78585 0.78629 1.18614 1.20298 1.20287 1.22082 0.97416 0.98386 0.89038 1.21874 1.00150 0.94331 0.88637 1.61779 1.04060 1.57413 1.05154 1.21797 0.87887 0.98928 0.97720 1.21422 1.02378 0.98332 0.93463 1.20591 0.97583 0.97987 0.99474 1.20538 0.95900 1.01467 0.97378 1.21881 1.00570 0.98365 0.97600 1.21910 0.95024 0.97230 0.92426 0.93826 0.92187 0.90911 0.89639 0.91338 0.91986 0.95083 0.93143 0.93190 0.99141 0.99233 0.92785 0.94241 0.91412 0.90726 0.95024 0.95337 0.92008 0.90967 0.90475 0.91133 0.92870 0.91514 0.91700 0.90562 0.92978 0.90439 0.91430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.66 9.28 71.98 0.67 -3.99 16 2 C 0.05 1.25 5.69 86.31 0.49 1.74 16 3 N -0.54 -16.13 4.67 -896.23 -4.18 -20.31 16 4 C 0.07 2.39 4.71 86.30 0.41 2.80 16 5 C -0.09 -3.74 5.08 30.59 0.16 -3.58 16 6 C 0.03 1.43 4.97 29.85 0.15 1.58 16 7 C -0.54 -31.64 9.11 25.60 0.23 -31.41 16 8 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 9 C 0.00 -0.16 5.46 84.65 0.46 0.31 16 10 N -0.93 -58.03 13.29 21.45 0.28 -57.75 16 11 Si 0.97 45.17 29.54 68.60 2.03 47.20 16 12 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 13 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 14 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 15 C 0.06 1.50 4.49 86.30 0.39 1.88 16 16 C 0.08 1.70 4.80 86.30 0.41 2.12 16 17 N -0.56 -10.87 4.71 -900.26 -4.24 -15.12 16 18 C 0.06 1.12 4.33 85.26 0.37 1.49 16 19 C -0.12 -1.65 5.63 30.21 0.17 -1.48 16 20 C -0.12 -1.43 5.30 28.86 0.15 -1.27 16 21 C -0.12 -1.32 5.30 28.85 0.15 -1.17 16 22 C -0.15 -1.96 5.60 30.21 0.17 -1.79 16 23 C 0.06 0.97 5.16 85.26 0.44 1.41 16 24 H 0.04 1.29 6.22 -2.39 -0.01 1.27 16 25 H 0.06 1.37 6.32 -2.39 -0.02 1.36 16 26 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 27 H 0.09 1.94 6.66 -2.39 -0.02 1.92 16 28 H 0.07 2.00 6.46 -2.39 -0.02 1.99 16 29 H 0.06 2.30 7.86 -2.39 -0.02 2.28 16 30 H 0.03 1.14 5.98 -2.39 -0.01 1.12 16 31 H 0.05 2.12 6.55 -2.39 -0.02 2.11 16 32 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 33 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 34 H -0.01 -0.63 8.14 -2.38 -0.02 -0.65 16 35 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 36 H 0.04 0.98 4.77 -2.39 -0.01 0.96 16 37 H 0.07 1.88 7.82 -2.39 -0.02 1.86 16 38 H 0.07 1.75 7.80 -2.39 -0.02 1.73 16 39 H 0.03 0.67 6.57 -2.39 -0.02 0.65 16 40 H 0.03 0.52 6.44 -2.39 -0.02 0.50 16 41 H 0.06 1.20 7.03 -2.39 -0.02 1.18 16 42 H 0.07 1.07 7.08 -2.39 -0.02 1.06 16 43 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 45 H 0.05 0.70 7.51 -2.39 -0.02 0.68 16 46 H 0.07 0.72 7.52 -2.39 -0.02 0.70 16 47 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 48 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 49 H 0.05 0.83 6.74 -2.39 -0.02 0.82 16 50 H 0.08 1.16 6.59 -2.39 -0.02 1.15 16 51 H 0.07 1.08 7.64 -2.38 -0.02 1.07 16 Total: -1.00 -63.84 369.15 -0.44 -64.27 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: 0.86 Total: 13.06 kcal Atomic # 6 Polarization: -36.18 SS G_CDS: 4.82 Total: -31.36 kcal Atomic # 7 Polarization: -85.03 SS G_CDS: -8.14 Total: -93.17 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -63.84 -0.44 -64.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347301860.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.502 kcal (2) G-P(sol) polarization free energy of solvation -63.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds