Wall clock time and date at job start Tue Mar 31 2020 05:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21284 * 120.00109 * 2 1 4 4 N 1.34777 * 120.00137 * 179.97438 * 2 1 3 5 5 C 1.46506 * 119.99873 * 179.97438 * 4 2 1 6 6 C 1.52999 * 109.46684 * 180.02562 * 5 4 2 7 7 C 1.53006 * 109.46997 * 180.02562 * 6 5 4 8 8 H 1.09005 * 109.50363 * 54.99657 * 7 6 5 9 9 C 1.53126 * 109.49953 * 294.92452 * 7 6 5 10 10 C 1.53122 * 109.15584 * 182.44455 * 9 7 6 11 11 C 1.53032 * 109.31411 * 57.59225 * 10 9 7 12 12 N 1.46848 * 109.52575 * 300.84297 * 11 10 9 13 13 C 1.46895 * 111.00616 * 185.83894 * 12 11 10 14 14 C 1.53001 * 109.47202 * 45.78496 * 13 12 11 15 15 C 1.52995 * 109.47449 * 179.97438 * 14 13 12 16 16 C 1.50701 * 109.47531 * 180.02562 * 15 14 13 17 17 H 1.08004 * 119.99394 * 0.02562 * 16 15 14 18 18 C 1.37865 * 120.00187 * 180.02562 * 16 15 14 19 19 N 1.31521 * 120.00047 * 180.02562 * 18 16 15 20 20 Si 1.86806 * 120.00217 * 0.02562 * 18 16 15 21 21 H 1.48505 * 109.46949 * 90.00160 * 20 18 16 22 22 H 1.48501 * 109.46955 * 210.00065 * 20 18 16 23 23 H 1.48495 * 109.46744 * 329.99853 * 20 18 16 24 24 C 1.46849 * 111.19698 * 61.73788 * 12 11 10 25 25 H 1.09001 * 109.47288 * 269.99990 * 1 2 3 26 26 H 1.08997 * 109.47440 * 29.99902 * 1 2 3 27 27 H 1.09004 * 109.47246 * 149.99834 * 1 2 3 28 28 H 0.96995 * 120.00018 * 0.27749 * 4 2 1 29 29 H 1.09000 * 109.47212 * 300.00355 * 5 4 2 30 30 H 1.09001 * 109.46577 * 60.00430 * 5 4 2 31 31 H 1.09000 * 109.47486 * 300.00065 * 6 5 4 32 32 H 1.09001 * 109.47362 * 60.00788 * 6 5 4 33 33 H 1.08998 * 109.52232 * 302.30129 * 9 7 6 34 34 H 1.09000 * 109.52211 * 62.50131 * 9 7 6 35 35 H 1.09005 * 109.47189 * 297.65065 * 10 9 7 36 36 H 1.09001 * 109.53882 * 177.57855 * 10 9 7 37 37 H 1.08999 * 109.46801 * 180.82976 * 11 10 9 38 38 H 1.09005 * 109.46441 * 60.85547 * 11 10 9 39 39 H 1.08998 * 109.47678 * 165.78854 * 13 12 11 40 40 H 1.09005 * 109.46744 * 285.78963 * 13 12 11 41 41 H 1.08998 * 109.47096 * 300.00714 * 14 13 12 42 42 H 1.09000 * 109.46425 * 60.00484 * 14 13 12 43 43 H 1.09000 * 109.47317 * 300.00922 * 15 14 13 44 44 H 1.09005 * 109.46620 * 60.00392 * 15 14 13 45 45 H 0.96996 * 120.00034 * 180.02562 * 19 18 16 46 46 H 1.08997 * 109.46434 * 178.24660 * 24 12 11 47 47 H 1.08998 * 109.45282 * 58.27245 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1671 0.0000 6 6 4.1559 -2.6096 0.0001 7 6 5.6859 -2.6096 0.0001 8 1 6.0499 -2.0202 0.8417 9 6 6.1971 -2.0014 -1.3089 10 6 7.7271 -2.0611 -1.3269 11 6 8.1789 -3.5141 -1.1646 12 7 7.6652 -4.0492 0.1028 13 6 8.1932 -5.3960 0.3584 14 6 9.6984 -5.4141 0.0845 15 6 10.2485 -6.8166 0.3512 16 6 11.7312 -6.8344 0.0821 17 1 12.2312 -5.9351 -0.2460 18 6 12.4492 -7.9986 0.2547 19 7 13.7433 -8.0139 0.0202 20 14 11.5842 -9.5543 0.8215 21 1 11.1094 -10.3157 -0.3618 22 1 12.5313 -10.3911 1.6012 23 1 10.4245 -9.1926 1.6755 24 6 6.1969 -4.0468 0.1239 25 1 -0.3634 0.0000 1.0277 26 1 -0.3634 0.8900 -0.5138 27 1 -0.3634 -0.8900 -0.5139 28 1 1.6959 -2.0072 -0.0032 29 1 4.0089 -0.6538 -0.8905 30 1 4.0095 -0.6527 0.8895 31 1 3.7929 -3.1233 0.8903 32 1 3.7923 -3.1236 -0.8897 33 1 5.8013 -2.5670 -2.1524 34 1 5.8716 -0.9636 -1.3799 35 1 8.1237 -1.4629 -0.5065 36 1 8.0961 -1.6689 -2.2746 37 1 9.2680 -3.5578 -1.1623 38 1 7.7934 -4.1090 -1.9927 39 1 8.0098 -5.6670 1.3980 40 1 7.6961 -6.1114 -0.2968 41 1 9.8818 -5.1431 -0.9552 42 1 10.1954 -4.6987 0.7396 43 1 10.0650 -7.0872 1.3910 44 1 9.7514 -7.5324 -0.3036 45 1 14.2484 -8.8331 0.1413 46 1 5.8465 -4.4772 1.0620 47 1 5.8209 -4.6391 -0.7103 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000347639088.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:55 Heat of formation + Delta-G solvation = -66.372735 kcal Electronic energy + Delta-G solvation = -21933.418455 eV Core-core repulsion = 18728.706202 eV Total energy + Delta-G solvation = -3204.712253 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.00918 -39.26292 -36.31350 -34.73334 -33.20414 -32.19693 -31.20603 -30.48528 -28.11110 -26.86286 -24.68228 -23.19727 -22.47483 -21.22678 -20.84024 -19.77326 -19.54269 -17.15441 -16.74722 -16.50453 -16.07586 -15.68973 -15.03041 -14.92461 -14.52038 -14.28729 -14.08981 -13.91060 -13.47261 -13.37099 -13.17063 -12.83130 -12.60872 -12.53362 -12.29989 -12.08693 -11.76631 -11.64755 -11.57080 -11.10309 -10.96729 -10.89274 -10.65869 -10.38042 -10.28526 -10.18103 -9.95358 -9.63527 -9.55575 -9.43372 -9.13904 -8.52774 -8.08671 -6.03132 -4.00901 2.27864 2.84413 3.30530 3.37990 3.41833 4.02805 4.37088 4.45874 4.48387 4.57675 4.72953 4.77671 4.90895 4.93309 4.99479 5.15764 5.27552 5.30724 5.36435 5.38281 5.44146 5.51690 5.56458 5.59487 5.67430 5.69311 5.80228 5.83837 5.91757 6.03864 6.05086 6.10709 6.15129 6.22094 6.35971 6.55467 6.60211 6.89624 7.10347 7.28410 7.32174 7.36370 7.46124 7.81308 7.84762 8.55798 9.02112 9.59479 11.10388 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.043906 B = 0.002354 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.576910 B =11889.674557 C =12370.327529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.507 3.493 3 O -0.548 6.548 4 N -0.732 5.732 5 C 0.116 3.884 6 C -0.125 4.125 7 C -0.080 4.080 8 H 0.083 0.917 9 C -0.118 4.118 10 C -0.117 4.117 11 C 0.047 3.953 12 N -0.538 5.538 13 C 0.054 3.946 14 C -0.105 4.105 15 C -0.013 4.013 16 C -0.518 4.518 17 H 0.071 0.929 18 C 0.065 3.935 19 N -0.904 5.904 20 Si 0.881 3.119 21 H -0.278 1.278 22 H -0.288 1.288 23 H -0.266 1.266 24 C 0.062 3.938 25 H 0.093 0.907 26 H 0.092 0.908 27 H 0.079 0.921 28 H 0.401 0.599 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.057 0.943 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.089 0.911 38 H 0.029 0.971 39 H 0.070 0.930 40 H 0.027 0.973 41 H 0.056 0.944 42 H 0.062 0.938 43 H 0.016 0.984 44 H 0.008 0.992 45 H 0.262 0.738 46 H 0.071 0.929 47 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.887 11.965 -1.195 29.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.294 3.706 3 O -0.425 6.425 4 N -0.385 5.385 5 C -0.007 4.007 6 C -0.164 4.164 7 C -0.099 4.099 8 H 0.101 0.899 9 C -0.155 4.155 10 C -0.155 4.155 11 C -0.081 4.081 12 N -0.263 5.263 13 C -0.073 4.073 14 C -0.143 4.143 15 C -0.051 4.051 16 C -0.556 4.556 17 H 0.089 0.911 18 C -0.136 4.136 19 N -0.543 5.543 20 Si 0.708 3.292 21 H -0.204 1.204 22 H -0.214 1.214 23 H -0.190 1.190 24 C -0.066 4.066 25 H 0.112 0.888 26 H 0.111 0.889 27 H 0.098 0.902 28 H 0.235 0.765 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.108 0.892 38 H 0.047 0.953 39 H 0.089 0.911 40 H 0.045 0.955 41 H 0.075 0.925 42 H 0.081 0.919 43 H 0.034 0.966 44 H 0.027 0.973 45 H 0.072 0.928 46 H 0.090 0.910 47 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -26.117 12.914 -0.813 29.147 hybrid contribution -0.829 -1.990 -0.382 2.189 sum -26.945 10.924 -1.195 29.100 Atomic orbital electron populations 1.21887 0.91707 1.04874 1.04795 1.20840 0.90655 0.83518 0.75606 1.90742 1.70876 1.31455 1.49462 1.46156 1.07811 1.08747 1.75744 1.21461 0.79053 0.97486 1.02731 1.21807 0.96349 0.95463 1.02733 1.21103 0.92705 0.97012 0.99113 0.89903 1.21707 0.96300 1.00608 0.96910 1.21598 0.95139 0.96879 1.01904 1.22235 1.01500 0.94542 0.89776 1.61972 1.06673 1.24068 1.33544 1.22296 0.97206 0.87154 1.00608 1.21626 0.91570 1.00056 1.01012 1.19550 0.96932 0.92329 0.96281 1.21141 0.91271 0.97886 1.45336 0.91050 1.25046 0.94730 0.98902 0.94949 1.69920 1.06640 1.27963 1.49819 0.86765 0.79794 0.83414 0.79225 1.20405 1.21401 1.19027 1.22058 0.88509 0.95478 1.00579 0.88843 0.88892 0.90209 0.76534 0.91133 0.91336 0.91098 0.91325 0.92379 0.91786 0.91081 0.91677 0.89239 0.95315 0.91124 0.95502 0.92547 0.91889 0.96596 0.97337 0.92786 0.91040 0.95256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.73 10.30 36.00 0.37 -0.36 16 2 C 0.51 4.31 7.94 -10.99 -0.09 4.22 16 3 O -0.55 -7.41 17.10 5.55 0.09 -7.31 16 4 N -0.73 -4.79 5.56 -60.29 -0.33 -5.13 16 5 C 0.12 0.91 5.43 -4.04 -0.02 0.89 16 6 C -0.13 -0.85 4.80 -26.73 -0.13 -0.98 16 7 C -0.08 -0.74 2.35 -90.53 -0.21 -0.95 16 8 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 9 C -0.12 -1.12 4.98 -26.60 -0.13 -1.25 16 10 C -0.12 -1.31 6.09 -26.65 -0.16 -1.47 16 11 C 0.05 0.64 4.85 -3.84 -0.02 0.62 16 12 N -0.54 -7.66 4.81 -234.68 -1.13 -8.78 16 13 C 0.05 0.89 5.27 -3.83 -0.02 0.87 16 14 C -0.10 -2.08 4.40 -26.73 -0.12 -2.20 16 15 C -0.01 -0.31 4.04 -27.89 -0.11 -0.42 16 16 C -0.52 -14.93 9.66 -34.44 -0.33 -15.27 16 17 H 0.07 2.21 7.99 -52.48 -0.42 1.79 16 18 C 0.06 1.90 5.47 -17.82 -0.10 1.81 16 19 N -0.90 -28.14 13.96 55.43 0.77 -27.37 16 20 Si 0.88 21.88 27.47 -169.99 -4.67 17.22 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 23 H -0.27 -6.33 6.54 56.52 0.37 -5.96 16 24 C 0.06 0.70 4.71 -3.83 -0.02 0.68 16 25 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 26 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 28 H 0.40 1.43 8.47 -40.82 -0.35 1.08 16 29 H 0.07 0.63 6.63 -51.93 -0.34 0.29 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.56 6.70 -51.93 -0.35 0.22 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.09 1.35 5.81 -51.93 -0.30 1.05 16 38 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.03 0.44 8.08 -51.93 -0.42 0.02 16 41 H 0.06 1.11 6.21 -51.93 -0.32 0.79 16 42 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 43 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 44 H 0.01 0.20 7.57 -51.93 -0.39 -0.19 16 45 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 46 H 0.07 0.77 8.12 -51.93 -0.42 0.35 16 47 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 365.02 15.07 5.50 5.50 Total: -1.00 -33.91 365.02 -9.63 -43.54 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: -8.77 Total: -3.87 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: -1.09 Total: -13.80 kcal Atomic # 7 Polarization: -40.59 SS G_CDS: -0.69 Total: -41.28 kcal Atomic # 8 Polarization: -7.41 SS G_CDS: 0.09 Total: -7.31 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.67 Total: 17.22 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.91 -9.63 -43.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347639088.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.833 kcal (2) G-P(sol) polarization free energy of solvation -33.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds