Wall clock time and date at job start Tue Mar 31 2020 05:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21279 * 119.99926 * 2 1 4 4 N 1.34775 * 119.99773 * 180.02562 * 2 1 3 5 5 C 1.46504 * 119.99531 * 179.97438 * 4 2 1 6 6 C 1.53006 * 109.46883 * 179.97438 * 5 4 2 7 7 C 1.52997 * 109.47127 * 180.02562 * 6 5 4 8 8 H 1.08996 * 109.50266 * 304.92452 * 7 6 5 9 9 C 1.53120 * 109.50304 * 65.00298 * 7 6 5 10 10 C 1.53118 * 109.16175 * 177.59377 * 9 7 6 11 11 C 1.53038 * 109.27972 * 302.34643 * 10 9 7 12 12 N 1.46845 * 109.52050 * 59.17722 * 11 10 9 13 13 C 1.46901 * 110.99735 * 174.16388 * 12 11 10 14 14 C 1.53005 * 109.46992 * 293.95209 * 13 12 11 15 15 C 1.52999 * 109.47219 * 180.02562 * 14 13 12 16 16 C 1.50696 * 109.47484 * 180.02562 * 15 14 13 17 17 H 1.08006 * 119.99956 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00667 * 179.97438 * 16 15 14 19 19 N 1.31513 * 119.99526 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00246 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47455 * 59.99961 * 20 18 16 22 22 H 1.48506 * 109.47055 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47218 * 299.99601 * 20 18 16 24 24 C 1.46845 * 111.20053 * 298.25646 * 12 11 10 25 25 H 1.09001 * 109.47189 * 270.00194 * 1 2 3 26 26 H 1.09004 * 109.46893 * 29.99987 * 1 2 3 27 27 H 1.08998 * 109.46985 * 149.99796 * 1 2 3 28 28 H 0.96992 * 120.00503 * 359.97438 * 4 2 1 29 29 H 1.09001 * 109.46891 * 60.00097 * 5 4 2 30 30 H 1.08993 * 109.47378 * 299.99469 * 5 4 2 31 31 H 1.09001 * 109.46801 * 300.00349 * 6 5 4 32 32 H 1.09001 * 109.46998 * 59.99945 * 6 5 4 33 33 H 1.09006 * 109.52391 * 297.49867 * 9 7 6 34 34 H 1.09002 * 109.52434 * 57.68478 * 9 7 6 35 35 H 1.09004 * 109.50299 * 62.28868 * 10 9 7 36 36 H 1.08997 * 109.50065 * 182.36335 * 10 9 7 37 37 H 1.08990 * 109.46189 * 179.19452 * 11 10 9 38 38 H 1.09000 * 109.45749 * 299.16771 * 11 10 9 39 39 H 1.08997 * 109.47506 * 53.95034 * 13 12 11 40 40 H 1.09002 * 109.47461 * 173.95431 * 13 12 11 41 41 H 1.08997 * 109.46852 * 300.00225 * 14 13 12 42 42 H 1.09000 * 109.47030 * 60.00341 * 14 13 12 43 43 H 1.09004 * 109.47186 * 300.00220 * 15 14 13 44 44 H 1.09002 * 109.47355 * 60.00148 * 15 14 13 45 45 H 0.97004 * 120.00294 * 180.02562 * 19 18 16 46 46 H 1.09001 * 109.46799 * 301.73048 * 24 12 11 47 47 H 1.09004 * 109.46426 * 181.75743 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6459 -1.1671 -0.0011 6 6 4.1559 -2.6097 -0.0010 7 6 5.6859 -2.6097 -0.0009 8 1 6.0498 -2.0216 -0.8433 9 6 6.1970 -1.9997 1.3072 10 6 7.7270 -2.0584 1.3250 11 6 8.1788 -3.5119 1.1659 12 7 7.6651 -4.0495 -0.1004 13 6 8.1931 -5.3969 -0.3529 14 6 9.7046 -5.3186 -0.5771 15 6 10.2544 -6.7219 -0.8408 16 6 11.7432 -6.6449 -1.0610 17 1 12.2470 -5.6906 -1.0169 18 6 12.4625 -7.7929 -1.3178 19 7 11.8491 -8.9550 -1.3710 20 14 14.3080 -7.6975 -1.5900 21 1 14.9580 -7.1297 -0.3816 22 1 14.8417 -9.0595 -1.8460 23 1 14.5915 -6.8275 -2.7596 24 6 6.1968 -4.0472 -0.1216 25 1 -0.3633 0.0000 1.0277 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3633 -0.8900 -0.5139 28 1 1.6959 -2.0072 -0.0005 29 1 4.0095 -0.6535 0.8889 30 1 4.0089 -0.6532 -0.8911 31 1 3.7928 -3.1233 0.8893 32 1 3.7922 -3.1237 -0.8907 33 1 5.8715 -0.9617 1.3768 34 1 5.8010 -2.5639 2.1515 35 1 8.1237 -1.4619 0.5034 36 1 8.0952 -1.6638 2.2720 37 1 9.2678 -3.5555 1.1638 38 1 7.7932 -4.1049 1.9952 39 1 7.9858 -6.0353 0.5059 40 1 7.7154 -5.8141 -1.2394 41 1 9.9119 -4.6803 -1.4360 42 1 10.1823 -4.9015 0.3094 43 1 10.0470 -7.3606 0.0178 44 1 9.7767 -7.1387 -1.7275 45 1 12.3551 -9.7627 -1.5512 46 1 5.8205 -4.6377 0.7138 47 1 5.8464 -4.4796 -1.0588 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000347639090.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:57 Heat of formation + Delta-G solvation = -72.709647 kcal Electronic energy + Delta-G solvation = -21850.656702 eV Core-core repulsion = 18645.669660 eV Total energy + Delta-G solvation = -3204.987042 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.97940 -39.18112 -36.20271 -34.63441 -33.22604 -32.18748 -30.95232 -30.43072 -27.97345 -26.58387 -24.50784 -23.26905 -22.44053 -21.28883 -20.83754 -19.73108 -19.63277 -17.12957 -16.56049 -16.27656 -16.04478 -15.50618 -15.06149 -14.83781 -14.47748 -14.24998 -14.18997 -13.83507 -13.49889 -13.27146 -13.13651 -12.77820 -12.55442 -12.31449 -12.18841 -11.98670 -11.62193 -11.58888 -11.26637 -11.04889 -10.85898 -10.70915 -10.65414 -10.56610 -10.33957 -10.22764 -10.14276 -9.55209 -9.41196 -9.29230 -9.03460 -8.31835 -8.02655 -5.97436 -3.99332 2.30093 2.87083 3.35269 3.39194 3.42147 4.08218 4.39797 4.48699 4.51542 4.61792 4.75763 4.79953 4.92793 4.96012 5.02496 5.18000 5.31041 5.38225 5.39879 5.41607 5.46861 5.53770 5.61158 5.66965 5.71811 5.74834 5.84528 5.92850 5.94701 6.06605 6.12640 6.13869 6.23157 6.34619 6.38658 6.73944 6.81250 7.12947 7.15766 7.41646 7.44428 7.70885 7.86212 7.87087 8.03125 8.46711 9.07649 9.64400 11.13973 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.046070 B = 0.002233 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.628308 B =12535.163432 C =12825.252965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.507 3.493 3 O -0.548 6.548 4 N -0.732 5.732 5 C 0.116 3.884 6 C -0.125 4.125 7 C -0.080 4.080 8 H 0.083 0.917 9 C -0.117 4.117 10 C -0.117 4.117 11 C 0.052 3.948 12 N -0.539 5.539 13 C 0.057 3.943 14 C -0.105 4.105 15 C 0.022 3.978 16 C -0.518 4.518 17 H 0.054 0.946 18 C 0.055 3.945 19 N -0.897 5.897 20 Si 0.892 3.108 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.277 1.277 24 C 0.062 3.938 25 H 0.093 0.907 26 H 0.092 0.908 27 H 0.079 0.921 28 H 0.401 0.599 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.082 0.918 38 H 0.027 0.973 39 H 0.027 0.973 40 H 0.068 0.932 41 H 0.055 0.945 42 H 0.047 0.953 43 H 0.013 0.987 44 H 0.015 0.985 45 H 0.260 0.740 46 H 0.028 0.972 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.455 13.794 5.030 26.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.294 3.706 3 O -0.426 6.426 4 N -0.384 5.384 5 C -0.007 4.007 6 C -0.164 4.164 7 C -0.100 4.100 8 H 0.101 0.899 9 C -0.155 4.155 10 C -0.155 4.155 11 C -0.076 4.076 12 N -0.263 5.263 13 C -0.070 4.070 14 C -0.143 4.143 15 C -0.016 4.016 16 C -0.556 4.556 17 H 0.073 0.927 18 C -0.146 4.146 19 N -0.536 5.536 20 Si 0.720 3.280 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.202 1.202 24 C -0.066 4.066 25 H 0.111 0.889 26 H 0.111 0.889 27 H 0.098 0.902 28 H 0.235 0.765 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.101 0.899 38 H 0.046 0.954 39 H 0.045 0.955 40 H 0.087 0.913 41 H 0.074 0.926 42 H 0.065 0.935 43 H 0.031 0.969 44 H 0.034 0.966 45 H 0.070 0.930 46 H 0.046 0.954 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -21.813 14.664 4.623 26.687 hybrid contribution 0.504 -1.147 0.509 1.352 sum -21.309 13.517 5.132 25.751 Atomic orbital electron populations 1.21888 0.91718 1.04902 1.04759 1.20838 0.90653 0.83520 0.75607 1.90739 1.70884 1.31461 1.49497 1.46156 1.07823 1.08748 1.75706 1.21463 0.79041 0.97526 1.02702 1.21808 0.96364 0.95421 1.02765 1.21105 0.92699 0.97109 0.99043 0.89896 1.21703 0.96221 1.00580 0.96987 1.21587 0.95226 0.96838 1.01814 1.22132 1.01010 0.94613 0.89833 1.61955 1.06558 1.24421 1.33348 1.22271 0.98057 0.86909 0.99728 1.21657 0.91149 1.00891 1.00571 1.19070 0.95467 0.90268 0.96767 1.21219 0.93136 0.93211 1.48080 0.92738 1.25031 0.98451 0.95522 0.95553 1.69957 1.35818 0.98072 1.49800 0.86654 0.85618 0.76977 0.78725 1.20286 1.21333 1.20229 1.22060 0.88610 0.95349 1.00621 0.88883 0.88894 0.90176 0.76515 0.91178 0.91328 0.91342 0.91040 0.91822 0.92395 0.91061 0.91791 0.89920 0.95437 0.95478 0.91303 0.92603 0.93467 0.96891 0.96642 0.93017 0.95351 0.90946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.76 10.30 36.01 0.37 -0.39 16 2 C 0.51 4.41 7.94 -10.98 -0.09 4.33 16 3 O -0.55 -7.51 17.10 5.56 0.10 -7.42 16 4 N -0.73 -4.97 5.56 -60.29 -0.33 -5.30 16 5 C 0.12 0.94 5.43 -4.04 -0.02 0.92 16 6 C -0.13 -0.90 4.80 -26.73 -0.13 -1.02 16 7 C -0.08 -0.77 2.35 -90.54 -0.21 -0.98 16 8 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 9 C -0.12 -1.13 4.98 -26.61 -0.13 -1.27 16 10 C -0.12 -1.31 6.09 -26.65 -0.16 -1.47 16 11 C 0.05 0.72 5.29 -3.83 -0.02 0.70 16 12 N -0.54 -8.00 4.65 -234.67 -1.09 -9.09 16 13 C 0.06 1.00 4.96 -3.82 -0.02 0.98 16 14 C -0.10 -2.20 5.09 -26.73 -0.14 -2.34 16 15 C 0.02 0.57 4.97 -27.89 -0.14 0.43 16 16 C -0.52 -14.89 9.11 -34.44 -0.31 -15.20 16 17 H 0.05 1.52 7.74 -52.48 -0.41 1.12 16 18 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 19 N -0.90 -27.21 13.29 55.43 0.74 -26.47 16 20 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 C 0.06 0.74 4.74 -3.83 -0.02 0.72 16 25 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 28 H 0.40 1.53 8.47 -40.82 -0.35 1.18 16 29 H 0.07 0.64 6.62 -51.93 -0.34 0.30 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.57 6.70 -51.93 -0.35 0.22 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.08 1.25 6.22 -51.93 -0.32 0.92 16 38 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 39 H 0.03 0.48 8.12 -51.93 -0.42 0.06 16 40 H 0.07 1.20 7.98 -51.93 -0.41 0.78 16 41 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.05 0.98 6.44 -51.93 -0.33 0.64 16 43 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 46 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 47 H 0.07 0.84 8.01 -51.93 -0.42 0.43 16 LS Contribution 369.72 15.07 5.57 5.57 Total: -1.00 -33.55 369.72 -9.99 -43.54 By element: Atomic # 1 Polarization: 4.21 SS G_CDS: -8.83 Total: -4.62 kcal Atomic # 6 Polarization: -11.98 SS G_CDS: -1.12 Total: -13.10 kcal Atomic # 7 Polarization: -40.17 SS G_CDS: -0.69 Total: -40.86 kcal Atomic # 8 Polarization: -7.51 SS G_CDS: 0.10 Total: -7.42 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.55 -9.99 -43.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347639090.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.171 kcal (2) G-P(sol) polarization free energy of solvation -33.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds