Wall clock time and date at job start Tue Mar 31 2020 06:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.50798 * 2 1 4 4 C 1.53039 * 109.50657 * 239.91968 * 2 1 3 5 5 N 1.46839 * 109.52602 * 180.87826 * 4 2 1 6 6 C 1.46905 * 111.00252 * 185.84234 * 5 4 2 7 7 C 1.46845 * 111.20130 * 61.74446 * 5 4 2 8 8 H 1.09001 * 109.45846 * 58.25713 * 7 5 4 9 9 C 1.52997 * 109.46811 * 178.24074 * 7 5 4 10 10 C 1.53036 * 109.52166 * 298.25852 * 7 5 4 11 11 C 1.53120 * 109.50294 * 120.11760 * 2 1 3 12 12 H 1.08995 * 109.52445 * 57.69229 * 11 2 1 13 13 N 1.46900 * 109.52435 * 297.49700 * 11 2 1 14 14 C 1.46899 * 110.99823 * 154.99864 * 13 11 2 15 15 C 1.53007 * 109.46768 * 180.02562 * 14 13 11 16 16 C 1.52997 * 109.46987 * 299.99905 * 15 14 13 17 17 C 1.53003 * 109.47102 * 60.00250 * 15 14 13 18 18 C 1.53002 * 109.46845 * 179.97438 * 15 14 13 19 19 C 1.50693 * 109.47091 * 179.97438 * 18 15 14 20 20 H 1.08008 * 120.00123 * 0.02562 * 19 18 15 21 21 C 1.37878 * 120.00157 * 180.02562 * 19 18 15 22 22 N 1.31507 * 119.99856 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00041 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47158 * 60.00219 * 23 21 19 25 25 H 1.48498 * 109.46934 * 179.97438 * 23 21 19 26 26 H 1.48495 * 109.47266 * 300.00089 * 23 21 19 27 27 H 1.08992 * 109.46869 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47043 * 300.08102 * 1 2 3 29 29 H 1.09004 * 109.46829 * 60.07725 * 1 2 3 30 30 H 1.09006 * 109.46110 * 60.86247 * 4 2 1 31 31 H 1.09001 * 109.46007 * 300.89768 * 4 2 1 32 32 H 1.09004 * 109.46653 * 295.79351 * 6 5 4 33 33 H 1.09002 * 109.47134 * 55.78736 * 6 5 4 34 34 H 1.08995 * 109.47549 * 175.79570 * 6 5 4 35 35 H 1.09002 * 109.47153 * 59.99871 * 9 7 5 36 36 H 1.09001 * 109.46832 * 300.00062 * 9 7 5 37 37 H 1.09004 * 109.47261 * 180.02562 * 9 7 5 38 38 H 1.09008 * 109.50634 * 179.11377 * 10 7 5 39 39 H 1.08996 * 109.50609 * 299.23278 * 10 7 5 40 40 H 1.00901 * 111.00121 * 278.95753 * 13 11 2 41 41 H 1.08998 * 109.47076 * 300.00385 * 14 13 11 42 42 H 1.08995 * 109.46936 * 60.00632 * 14 13 11 43 43 H 1.09000 * 109.46979 * 60.00309 * 16 15 14 44 44 H 1.09005 * 109.46932 * 180.02562 * 16 15 14 45 45 H 1.08995 * 109.47625 * 300.00232 * 16 15 14 46 46 H 1.09003 * 109.46637 * 59.99805 * 17 15 14 47 47 H 1.08991 * 109.46629 * 179.97438 * 17 15 14 48 48 H 1.08995 * 109.46738 * 299.99761 * 17 15 14 49 49 H 1.08994 * 109.47483 * 300.00494 * 18 15 14 50 50 H 1.09004 * 109.46921 * 60.00472 * 18 15 14 51 51 H 0.97003 * 120.00257 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0410 -0.7230 -1.2483 5 7 3.5092 -0.7417 -1.2381 6 6 4.0373 -1.3050 -2.4879 7 6 4.0230 -1.4729 -0.0729 8 1 3.6373 -2.4923 -0.0850 9 6 5.5518 -1.5055 -0.1249 10 6 3.5713 -0.7723 1.2104 11 6 2.0412 -0.7242 1.2485 12 1 1.6453 -1.7395 1.2684 13 7 1.6025 -0.0012 2.4496 14 6 1.5326 -0.9004 3.6092 15 6 1.0726 -0.1132 4.8379 16 6 2.0686 1.0123 5.1247 17 6 -0.3104 0.4848 4.5722 18 6 0.9992 -1.0499 6.0455 19 6 0.5468 -0.2745 7.2558 20 1 0.3326 0.7808 7.1721 21 6 0.4062 -0.9122 8.4702 22 7 0.6675 -2.1971 8.5722 23 14 -0.1552 0.0488 9.9704 24 1 -1.4976 0.6292 9.7125 25 1 -0.2264 -0.8603 11.1424 26 1 0.8113 1.1413 10.2486 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5151 0.8892 29 1 -0.3633 0.5127 -0.8907 30 1 1.6906 -0.2015 -2.1390 31 1 1.6648 -1.7460 -1.2549 32 1 3.7373 -2.3496 -2.5708 33 1 3.6410 -0.7449 -3.3349 34 1 5.1252 -1.2385 -2.4853 35 1 5.9375 -0.4861 -0.1132 36 1 5.8737 -2.0054 -1.0385 37 1 5.9332 -2.0487 0.7398 38 1 3.9395 -1.3242 2.0754 39 1 3.9678 0.2427 1.2299 40 1 2.2051 0.7859 2.6382 41 1 0.8228 -1.7020 3.4050 42 1 2.5177 -1.3267 3.7982 43 1 2.1204 1.6794 4.2643 44 1 1.7411 1.5728 6.0003 45 1 3.0538 0.5862 5.3140 46 1 -1.0198 -0.3171 4.3679 47 1 -0.6381 1.0452 5.4477 48 1 -0.2584 1.1520 3.7118 49 1 0.2895 -1.8515 5.8409 50 1 1.9843 -1.4763 6.2350 51 1 0.5690 -2.6457 9.4266 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348208764.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:04 Heat of formation + Delta-G solvation = -24.512735 kcal Electronic energy + Delta-G solvation = -23797.664642 eV Core-core repulsion = 20730.600670 eV Total energy + Delta-G solvation = -3067.063973 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.83467 -37.47070 -35.25409 -33.37466 -32.40198 -31.08757 -28.57570 -27.06789 -26.46813 -26.27725 -25.04869 -24.38498 -22.90160 -21.85398 -20.49286 -19.92405 -17.76166 -16.20897 -16.00214 -15.53266 -15.26609 -14.90181 -14.61337 -14.37904 -14.23321 -13.71157 -13.26490 -13.04799 -12.81496 -12.62219 -12.51942 -12.29493 -12.12305 -11.96166 -11.88612 -11.81232 -11.69772 -11.46712 -11.00200 -10.98728 -10.86668 -10.77744 -10.63170 -10.55144 -10.46239 -10.38917 -10.19285 -10.03705 -9.64010 -8.97111 -8.79888 -8.48987 -8.29328 -7.94262 -5.94031 -3.94032 3.36138 3.40652 3.42994 3.71161 4.38353 4.52142 4.67279 4.70230 4.82260 4.97652 5.14274 5.21882 5.26807 5.37941 5.41642 5.42764 5.48614 5.55934 5.61910 5.62636 5.69213 5.73181 5.74678 5.81016 5.86727 5.93750 6.00712 6.04324 6.11026 6.17579 6.33295 6.37661 6.41808 6.47840 6.56313 6.70709 6.84043 6.86793 6.92993 6.96213 7.25036 7.29132 7.30412 7.48075 7.72060 7.77642 7.89277 8.06492 8.51184 9.11287 9.68606 11.17652 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.030277 B = 0.003391 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.570243 B = 8255.938751 C = 8730.368556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.074 4.074 3 H 0.076 0.924 4 C 0.061 3.939 5 N -0.539 5.539 6 C 0.022 3.978 7 C 0.085 3.915 8 H 0.038 0.962 9 C -0.148 4.148 10 C -0.141 4.141 11 C 0.091 3.909 12 H 0.070 0.930 13 N -0.677 5.677 14 C 0.072 3.928 15 C -0.058 4.058 16 C -0.128 4.128 17 C -0.115 4.115 18 C 0.035 3.965 19 C -0.507 4.507 20 H 0.058 0.942 21 C 0.055 3.945 22 N -0.898 5.898 23 Si 0.887 3.113 24 H -0.277 1.277 25 H -0.289 1.289 26 H -0.278 1.278 27 H 0.045 0.955 28 H 0.075 0.925 29 H 0.043 0.957 30 H 0.073 0.927 31 H 0.030 0.970 32 H 0.022 0.978 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.055 0.945 37 H 0.060 0.940 38 H 0.067 0.933 39 H 0.071 0.929 40 H 0.339 0.661 41 H 0.063 0.937 42 H 0.022 0.978 43 H 0.033 0.967 44 H 0.063 0.937 45 H 0.039 0.961 46 H 0.038 0.962 47 H 0.053 0.947 48 H 0.042 0.958 49 H 0.014 0.986 50 H 0.011 0.989 51 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.858 2.442 -20.878 21.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.093 4.093 3 H 0.094 0.906 4 C -0.068 4.068 5 N -0.264 5.264 6 C -0.126 4.126 7 C -0.024 4.024 8 H 0.056 0.944 9 C -0.206 4.206 10 C -0.180 4.180 11 C -0.020 4.020 12 H 0.088 0.912 13 N -0.307 5.307 14 C -0.057 4.057 15 C -0.059 4.059 16 C -0.185 4.185 17 C -0.172 4.172 18 C -0.003 4.003 19 C -0.545 4.545 20 H 0.076 0.924 21 C -0.146 4.146 22 N -0.538 5.538 23 Si 0.716 3.284 24 H -0.203 1.203 25 H -0.215 1.215 26 H -0.204 1.204 27 H 0.064 0.936 28 H 0.094 0.906 29 H 0.062 0.938 30 H 0.092 0.908 31 H 0.049 0.951 32 H 0.040 0.960 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.158 0.842 41 H 0.081 0.919 42 H 0.040 0.960 43 H 0.052 0.948 44 H 0.082 0.918 45 H 0.058 0.942 46 H 0.057 0.943 47 H 0.072 0.928 48 H 0.062 0.938 49 H 0.032 0.968 50 H 0.030 0.970 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.342 2.717 -20.843 21.687 hybrid contribution 0.449 -0.715 1.061 1.356 sum 5.791 2.002 -19.781 20.709 Atomic orbital electron populations 1.21665 0.94329 1.01431 1.01978 1.21091 0.95895 0.99916 0.92406 0.90572 1.22192 0.86670 0.98971 0.98923 1.61945 1.08266 1.54075 1.02064 1.22410 1.00995 0.97268 0.91968 1.21560 0.95161 0.94982 0.90651 0.94393 1.21928 0.94528 1.02512 1.01603 1.22394 0.97739 1.01575 0.96314 1.21634 0.91784 0.97502 0.91060 0.91206 1.60645 1.56004 1.10841 1.03256 1.22108 0.98701 0.94973 0.89935 1.20624 0.94942 0.96002 0.94288 1.21758 0.98432 0.98077 1.00266 1.21586 0.95945 0.99744 0.99935 1.19107 0.96753 0.93785 0.90644 1.21211 1.44256 0.95517 0.93511 0.92356 1.25013 0.95869 0.94821 0.98884 1.69954 1.49738 1.09010 1.25132 0.86731 0.79280 0.79810 0.82615 1.20317 1.21469 1.20359 0.93557 0.90590 0.93758 0.90840 0.95129 0.95953 0.91606 0.91042 0.91760 0.92638 0.92142 0.91466 0.90989 0.84196 0.91851 0.96023 0.94767 0.91830 0.94198 0.94285 0.92822 0.93850 0.96789 0.97024 0.93138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.06 37.16 0.34 -1.17 16 2 C -0.07 -0.82 2.58 -90.54 -0.23 -1.05 16 3 H 0.08 0.90 8.14 -51.92 -0.42 0.48 16 4 C 0.06 0.61 4.75 -3.84 -0.02 0.60 16 5 N -0.54 -5.49 4.75 -234.93 -1.11 -6.60 16 6 C 0.02 0.18 9.05 60.07 0.54 0.72 16 7 C 0.09 0.89 2.44 -67.73 -0.17 0.73 16 8 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 9 C -0.15 -1.35 8.76 37.16 0.33 -1.02 16 10 C -0.14 -1.63 4.63 -26.65 -0.12 -1.75 16 11 C 0.09 1.12 1.95 -67.58 -0.13 0.99 16 12 H 0.07 0.95 7.80 -51.93 -0.41 0.54 16 13 N -0.68 -9.54 4.82 -106.59 -0.51 -10.06 16 14 C 0.07 1.22 4.45 -3.82 -0.02 1.21 16 15 C -0.06 -1.15 0.60 -154.50 -0.09 -1.25 16 16 C -0.13 -2.38 7.89 37.16 0.29 -2.08 16 17 C -0.11 -2.22 8.06 37.16 0.30 -1.92 16 18 C 0.03 0.87 4.04 -27.89 -0.11 0.76 16 19 C -0.51 -13.92 7.65 -34.44 -0.26 -14.18 16 20 H 0.06 1.56 5.68 -52.48 -0.30 1.26 16 21 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 22 N -0.90 -27.02 13.29 55.43 0.74 -26.28 16 23 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 26 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.08 0.96 7.69 -51.93 -0.40 0.56 16 29 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.68 8.09 -51.93 -0.42 0.26 16 31 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 33 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 34 H 0.07 0.54 6.21 -51.93 -0.32 0.22 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.05 0.45 6.33 -51.93 -0.33 0.12 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.83 7.54 -51.92 -0.39 0.44 16 39 H 0.07 0.86 8.10 -51.93 -0.42 0.44 16 40 H 0.34 4.71 6.49 -39.29 -0.25 4.46 16 41 H 0.06 1.14 8.06 -51.93 -0.42 0.72 16 42 H 0.02 0.38 7.51 -51.93 -0.39 -0.01 16 43 H 0.03 0.54 6.57 -51.93 -0.34 0.20 16 44 H 0.06 1.29 6.62 -51.93 -0.34 0.94 16 45 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 46 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.05 1.11 6.62 -51.93 -0.34 0.77 16 48 H 0.04 0.75 7.60 -51.93 -0.39 0.35 16 49 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 50 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 51 H 0.26 7.41 8.31 -40.82 -0.34 7.08 16 LS Contribution 376.10 15.07 5.67 5.67 Total: -1.00 -28.50 376.10 -9.80 -38.31 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -10.10 Total: 0.23 kcal Atomic # 6 Polarization: -18.50 SS G_CDS: 0.54 Total: -17.95 kcal Atomic # 7 Polarization: -42.05 SS G_CDS: -0.89 Total: -42.94 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -28.50 -9.80 -38.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348208764.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.795 kcal (2) G-P(sol) polarization free energy of solvation -28.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds