Wall clock time and date at job start Tue Mar 31 2020 06:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.53512 * 2 1 4 4 C 1.53039 * 109.50174 * 239.89700 * 2 1 3 5 5 N 1.46843 * 109.52424 * 299.23614 * 4 2 1 6 6 C 1.46895 * 110.99731 * 174.15765 * 5 4 2 7 7 C 1.46846 * 111.20190 * 298.26000 * 5 4 2 8 8 H 1.08998 * 109.45795 * 301.72369 * 7 5 4 9 9 C 1.53000 * 109.45825 * 181.75589 * 7 5 4 10 10 C 1.53031 * 109.52193 * 61.74360 * 7 5 4 11 11 C 1.53124 * 109.49995 * 120.09445 * 2 1 3 12 12 H 1.09005 * 109.57164 * 182.21811 * 11 2 1 13 13 N 1.46891 * 109.52642 * 302.38097 * 11 2 1 14 14 C 1.46899 * 111.00086 * 204.68313 * 13 11 2 15 15 C 1.53002 * 109.47000 * 179.97438 * 14 13 11 16 16 C 1.52996 * 109.46891 * 60.00398 * 15 14 13 17 17 C 1.53002 * 109.47454 * 300.00066 * 15 14 13 18 18 C 1.53005 * 109.47197 * 179.97438 * 15 14 13 19 19 C 1.50695 * 109.47088 * 180.02562 * 18 15 14 20 20 H 1.07995 * 120.00496 * 0.02562 * 19 18 15 21 21 C 1.37880 * 119.99572 * 180.02562 * 19 18 15 22 22 N 1.31511 * 120.00327 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99951 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47297 * 59.99744 * 23 21 19 25 25 H 1.48503 * 109.47261 * 299.99924 * 23 21 19 26 26 H 1.48500 * 109.47454 * 179.97438 * 23 21 19 27 27 H 1.09004 * 109.46976 * 299.90485 * 1 2 3 28 28 H 1.09000 * 109.46646 * 59.90384 * 1 2 3 29 29 H 1.09001 * 109.47162 * 179.90503 * 1 2 3 30 30 H 1.09006 * 109.45825 * 179.22299 * 4 2 1 31 31 H 1.09001 * 109.45380 * 59.25503 * 4 2 1 32 32 H 1.08999 * 109.47501 * 184.21103 * 6 5 4 33 33 H 1.08995 * 109.47723 * 304.21487 * 6 5 4 34 34 H 1.09007 * 109.47136 * 64.21406 * 6 5 4 35 35 H 1.08998 * 109.47737 * 299.94582 * 9 7 5 36 36 H 1.09003 * 109.46863 * 59.95200 * 9 7 5 37 37 H 1.09007 * 109.46623 * 179.97438 * 9 7 5 38 38 H 1.09002 * 109.50185 * 180.87839 * 10 7 5 39 39 H 1.08994 * 109.54030 * 60.78057 * 10 7 5 40 40 H 1.00899 * 111.00020 * 80.72669 * 13 11 2 41 41 H 1.09002 * 109.46776 * 60.00451 * 14 13 11 42 42 H 1.09001 * 109.47354 * 299.99909 * 14 13 11 43 43 H 1.09004 * 109.47368 * 179.97438 * 16 15 14 44 44 H 1.08996 * 109.47261 * 299.99425 * 16 15 14 45 45 H 1.09001 * 109.47372 * 59.99964 * 16 15 14 46 46 H 1.09002 * 109.47067 * 300.00138 * 17 15 14 47 47 H 1.09000 * 109.46497 * 59.99891 * 17 15 14 48 48 H 1.08996 * 109.46876 * 180.02562 * 17 15 14 49 49 H 1.09002 * 109.46935 * 60.00099 * 18 15 14 50 50 H 1.08998 * 109.47061 * 300.00893 * 18 15 14 51 51 H 0.97006 * 119.99995 * 359.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8945 1.0273 0.0000 4 6 2.0409 -0.7235 -1.2480 5 7 1.5676 -2.1135 -1.2377 6 6 1.9223 -2.7996 -2.4872 7 6 2.0846 -2.8420 -0.0722 8 1 3.1743 -2.8196 -0.0842 9 6 1.6040 -4.2936 -0.1242 10 6 1.5749 -2.1818 1.2108 11 6 2.0412 -0.7238 1.2488 12 1 3.1305 -0.6902 1.2702 13 7 1.5062 -0.0684 2.4496 14 6 2.3726 -0.3093 3.6112 15 6 1.7844 0.3879 4.8396 16 6 0.3873 -0.1685 5.1214 17 6 1.6908 1.8922 4.5764 18 6 2.6865 0.1364 6.0495 19 6 2.1067 0.8225 7.2595 20 1 1.1867 1.3816 7.1743 21 6 2.7510 0.7365 8.4755 22 7 3.8716 0.0561 8.5793 23 14 2.0320 1.5863 9.9756 24 1 0.6763 1.0453 10.2488 25 1 1.9402 3.0465 9.7208 26 1 2.9076 1.3424 11.1499 27 1 -0.3633 0.5124 0.8909 28 1 -0.3632 0.5153 -0.8891 29 1 -0.3633 -1.0277 -0.0017 30 1 3.1309 -0.7111 -1.2543 31 1 1.6669 -0.2190 -2.1388 32 1 1.4958 -3.8027 -2.4847 33 1 1.5272 -2.2391 -3.3344 34 1 3.0072 -2.8663 -2.5699 35 1 0.5144 -4.3164 -0.1119 36 1 1.9670 -4.7640 -1.0381 37 1 1.9881 -4.8347 0.7407 38 1 1.9715 -2.7133 2.0759 39 1 0.4857 -2.2161 1.2306 40 1 0.5610 -0.3691 2.6350 41 1 3.3678 0.0875 3.4105 42 1 2.4396 -1.3810 3.7985 43 1 -0.0317 0.3278 5.9968 44 1 -0.2557 0.0102 4.2596 45 1 0.4540 -1.2402 5.3090 46 1 2.6861 2.2885 4.3756 47 1 1.0478 2.0708 3.7145 48 1 1.2721 2.3887 5.4517 49 1 3.6820 0.5325 5.8490 50 1 2.7528 -0.9353 6.2368 51 1 4.2448 -0.3855 7.8004 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348208766.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:07 Heat of formation + Delta-G solvation = -24.534450 kcal Electronic energy + Delta-G solvation = -23934.024650 eV Core-core repulsion = 20866.959736 eV Total energy + Delta-G solvation = -3067.064914 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.04540 -37.57782 -35.33541 -33.27096 -32.55673 -31.10387 -28.15137 -26.86572 -26.48948 -26.30144 -25.48528 -24.63038 -22.96976 -22.17535 -20.70464 -18.98623 -18.07786 -16.39407 -16.27323 -15.65207 -15.43638 -14.85740 -14.65111 -14.42662 -13.91244 -13.68413 -13.40765 -13.32599 -12.97477 -12.79126 -12.55135 -12.27335 -12.16123 -12.08169 -11.91741 -11.60877 -11.59216 -11.52907 -11.10301 -11.02589 -10.94804 -10.85434 -10.69855 -10.54258 -10.49879 -10.32786 -10.08180 -9.90436 -9.74704 -9.23285 -8.48890 -8.36606 -8.25624 -8.02283 -6.27353 -3.94824 3.47208 3.49055 3.67350 3.69179 4.34055 4.60382 4.63678 4.65951 4.79703 4.98348 5.08855 5.19489 5.21059 5.29641 5.37138 5.42910 5.47871 5.50541 5.57605 5.58072 5.64463 5.68671 5.71998 5.74259 5.86417 5.90185 5.91796 5.97167 6.07796 6.19854 6.24573 6.26898 6.30397 6.45787 6.50690 6.61703 6.74205 6.79367 6.89206 6.93504 7.14645 7.17442 7.22976 7.39458 7.45695 7.60891 7.72280 8.32743 8.55413 8.97502 9.75739 11.12566 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.032930 B = 0.003361 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.076782 B = 8329.495354 C = 8690.189312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.075 4.075 3 H 0.077 0.923 4 C 0.060 3.940 5 N -0.534 5.534 6 C 0.022 3.978 7 C 0.086 3.914 8 H 0.038 0.962 9 C -0.148 4.148 10 C -0.142 4.142 11 C 0.091 3.909 12 H 0.069 0.931 13 N -0.678 5.678 14 C 0.070 3.930 15 C -0.051 4.051 16 C -0.127 4.127 17 C -0.114 4.114 18 C 0.021 3.979 19 C -0.587 4.587 20 H 0.053 0.947 21 C 0.011 3.989 22 N -0.918 5.918 23 Si 1.065 2.935 24 H -0.289 1.289 25 H -0.289 1.289 26 H -0.284 1.284 27 H 0.057 0.943 28 H 0.044 0.956 29 H 0.062 0.938 30 H 0.030 0.970 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.022 0.978 35 H 0.063 0.937 36 H 0.055 0.945 37 H 0.059 0.941 38 H 0.064 0.936 39 H 0.075 0.925 40 H 0.340 0.660 41 H 0.062 0.938 42 H 0.021 0.979 43 H 0.065 0.935 44 H 0.034 0.966 45 H 0.038 0.962 46 H 0.037 0.963 47 H 0.044 0.956 48 H 0.055 0.945 49 H 0.004 0.996 50 H 0.002 0.998 51 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.304 -4.986 -21.321 22.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.094 4.094 3 H 0.096 0.904 4 C -0.068 4.068 5 N -0.259 5.259 6 C -0.127 4.127 7 C -0.023 4.023 8 H 0.056 0.944 9 C -0.206 4.206 10 C -0.181 4.181 11 C -0.020 4.020 12 H 0.087 0.913 13 N -0.308 5.308 14 C -0.059 4.059 15 C -0.052 4.052 16 C -0.185 4.185 17 C -0.172 4.172 18 C -0.016 4.016 19 C -0.625 4.625 20 H 0.071 0.929 21 C -0.192 4.192 22 N -0.555 5.555 23 Si 0.894 3.106 24 H -0.216 1.216 25 H -0.215 1.215 26 H -0.210 1.210 27 H 0.076 0.924 28 H 0.063 0.937 29 H 0.081 0.919 30 H 0.048 0.952 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.040 0.960 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.094 0.906 40 H 0.160 0.840 41 H 0.081 0.919 42 H 0.039 0.961 43 H 0.084 0.916 44 H 0.053 0.947 45 H 0.057 0.943 46 H 0.056 0.944 47 H 0.063 0.937 48 H 0.074 0.926 49 H 0.023 0.977 50 H 0.020 0.980 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.288 -4.078 -19.790 20.886 hybrid contribution 0.614 -1.331 -1.529 2.118 sum -4.674 -5.408 -21.319 22.485 Atomic orbital electron populations 1.21693 0.94518 1.02109 1.01010 1.21131 0.97053 0.98854 0.92380 0.90421 1.22161 0.97082 0.88663 0.98939 1.61928 1.59945 1.02067 1.01966 1.22410 0.98380 0.99863 0.92002 1.21549 0.96537 0.93563 0.90660 0.94440 1.21926 1.02212 0.94817 1.01599 1.22412 1.02190 0.97229 0.96289 1.21597 0.98708 0.90635 0.91069 0.91302 1.60658 1.05996 1.61017 1.03141 1.22129 0.96316 0.97363 0.90105 1.20482 0.95780 0.95232 0.93697 1.21750 0.96414 0.99890 1.00405 1.21578 1.00280 0.95212 1.00082 1.19239 0.94135 0.95845 0.92409 1.22026 1.10767 1.34906 0.94808 0.92918 1.25781 0.95412 0.96796 1.01178 1.70777 1.19315 1.31678 1.33707 0.83598 0.75369 0.75825 0.75822 1.21573 1.21523 1.20953 0.92412 0.93668 0.91897 0.95204 0.90740 0.91051 0.91602 0.95988 0.91769 0.92592 0.92197 0.91699 0.90635 0.84007 0.91923 0.96082 0.91646 0.94682 0.94287 0.94388 0.93718 0.92648 0.97744 0.97979 0.92248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 8.43 37.16 0.31 -1.15 16 2 C -0.07 -0.82 2.94 -90.53 -0.27 -1.09 16 3 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 4 C 0.06 0.59 4.90 -3.84 -0.02 0.57 16 5 N -0.53 -5.20 4.03 -234.94 -0.95 -6.15 16 6 C 0.02 0.17 9.05 60.06 0.54 0.72 16 7 C 0.09 0.88 2.44 -67.73 -0.17 0.71 16 8 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 9 C -0.15 -1.31 8.77 37.16 0.33 -0.99 16 10 C -0.14 -1.62 4.27 -26.65 -0.11 -1.73 16 11 C 0.09 1.12 2.24 -67.59 -0.15 0.97 16 12 H 0.07 0.93 7.80 -51.93 -0.41 0.52 16 13 N -0.68 -9.70 4.92 -106.59 -0.52 -10.22 16 14 C 0.07 1.20 4.45 -3.82 -0.02 1.19 16 15 C -0.05 -1.04 0.60 -154.51 -0.09 -1.13 16 16 C -0.13 -2.41 7.89 37.16 0.29 -2.12 16 17 C -0.11 -2.26 8.07 37.16 0.30 -1.96 16 18 C 0.02 0.54 3.35 -27.88 -0.09 0.44 16 19 C -0.59 -16.34 7.65 -34.44 -0.26 -16.60 16 20 H 0.05 1.44 5.68 -52.49 -0.30 1.14 16 21 C 0.01 0.33 5.46 -17.82 -0.10 0.23 16 22 N -0.92 -28.38 13.65 55.43 0.76 -27.62 16 23 Si 1.06 25.54 29.90 -169.99 -5.08 20.46 16 24 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 26 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 27 H 0.06 0.67 7.17 -51.93 -0.37 0.30 16 28 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.70 6.01 -51.93 -0.31 0.39 16 30 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.07 0.67 8.09 -51.93 -0.42 0.25 16 32 H 0.07 0.53 6.21 -51.93 -0.32 0.20 16 33 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 34 H 0.02 0.17 8.14 -51.92 -0.42 -0.25 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.44 6.32 -51.93 -0.33 0.11 16 37 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 38 H 0.06 0.80 7.52 -51.93 -0.39 0.41 16 39 H 0.08 0.88 6.54 -51.93 -0.34 0.54 16 40 H 0.34 4.79 5.71 -39.29 -0.22 4.56 16 41 H 0.06 1.13 8.06 -51.93 -0.42 0.72 16 42 H 0.02 0.37 7.49 -51.93 -0.39 -0.02 16 43 H 0.06 1.36 6.61 -51.93 -0.34 1.01 16 44 H 0.03 0.56 6.57 -51.93 -0.34 0.22 16 45 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.04 0.79 7.60 -51.93 -0.39 0.40 16 48 H 0.05 1.18 6.62 -51.93 -0.34 0.84 16 49 H 0.00 0.12 8.01 -51.93 -0.42 -0.30 16 50 H 0.00 0.05 8.01 -51.93 -0.42 -0.36 16 51 H 0.27 8.25 7.22 -40.82 -0.29 7.96 16 LS Contribution 368.96 15.07 5.56 5.56 Total: -1.00 -29.30 368.96 -9.53 -38.83 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -9.79 Total: 1.08 kcal Atomic # 6 Polarization: -22.44 SS G_CDS: 0.50 Total: -21.94 kcal Atomic # 7 Polarization: -43.28 SS G_CDS: -0.71 Total: -43.99 kcal Atomic # 14 Polarization: 25.54 SS G_CDS: -5.08 Total: 20.46 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -29.30 -9.53 -38.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348208766.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.294 kcal (2) G-P(sol) polarization free energy of solvation -29.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds