Wall clock time and date at job start Tue Mar 31 2020 06:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.53707 * 2 1 4 4 C 1.53037 * 109.50488 * 239.89989 * 2 1 3 5 5 N 1.46850 * 109.52028 * 180.87945 * 4 2 1 6 6 C 1.46900 * 110.99740 * 185.83738 * 5 4 2 7 7 C 1.46929 * 111.22205 * 61.74456 * 5 4 2 8 8 H 1.08994 * 109.51866 * 178.25481 * 7 5 4 9 9 C 1.53000 * 109.45114 * 58.26467 * 7 5 4 10 10 C 1.53037 * 109.47910 * 298.28247 * 7 5 4 11 11 C 1.53114 * 109.31211 * 59.15772 * 10 7 5 12 12 H 1.09006 * 109.52545 * 62.23190 * 11 10 7 13 13 N 1.46901 * 109.52361 * 182.35887 * 11 10 7 14 14 C 1.46903 * 110.99848 * 274.99512 * 13 11 10 15 15 C 1.52997 * 109.47001 * 179.97438 * 14 13 11 16 16 C 1.52997 * 109.47626 * 300.00865 * 15 14 13 17 17 C 1.53007 * 109.46755 * 60.00378 * 15 14 13 18 18 C 1.52999 * 109.47149 * 180.02562 * 15 14 13 19 19 C 1.50697 * 109.46986 * 180.02562 * 18 15 14 20 20 H 1.07998 * 120.00810 * 0.02562 * 19 18 15 21 21 C 1.37880 * 119.99965 * 180.02562 * 19 18 15 22 22 N 1.31513 * 119.99768 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00327 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46992 * 89.99733 * 23 21 19 25 25 H 1.48500 * 109.47586 * 210.00019 * 23 21 19 26 26 H 1.48507 * 109.47100 * 330.00151 * 23 21 19 27 27 H 1.08998 * 109.47032 * 299.90254 * 1 2 3 28 28 H 1.09004 * 109.46428 * 59.90413 * 1 2 3 29 29 H 1.08999 * 109.46638 * 179.89952 * 1 2 3 30 30 H 1.08997 * 109.46525 * 300.89453 * 4 2 1 31 31 H 1.08995 * 109.46235 * 60.86989 * 4 2 1 32 32 H 1.09003 * 109.47044 * 63.95724 * 6 5 4 33 33 H 1.09002 * 109.47538 * 183.95397 * 6 5 4 34 34 H 1.09005 * 109.47410 * 303.95932 * 6 5 4 35 35 H 1.09005 * 109.46961 * 300.00746 * 9 7 5 36 36 H 1.08995 * 109.47672 * 60.00507 * 9 7 5 37 37 H 1.09001 * 109.47101 * 180.02562 * 9 7 5 38 38 H 1.09002 * 109.50283 * 299.19589 * 10 7 5 39 39 H 1.09003 * 109.50113 * 179.11776 * 10 7 5 40 40 H 1.00901 * 110.99671 * 151.04805 * 13 11 10 41 41 H 1.08996 * 109.47484 * 300.00138 * 14 13 11 42 42 H 1.09005 * 109.46602 * 60.00265 * 14 13 11 43 43 H 1.09003 * 109.47526 * 59.99236 * 16 15 14 44 44 H 1.08997 * 109.47454 * 180.02562 * 16 15 14 45 45 H 1.09005 * 109.46945 * 299.99955 * 16 15 14 46 46 H 1.09005 * 109.46826 * 59.99998 * 17 15 14 47 47 H 1.09006 * 109.46878 * 179.97438 * 17 15 14 48 48 H 1.08995 * 109.47431 * 300.00059 * 17 15 14 49 49 H 1.08996 * 109.47186 * 300.00420 * 18 15 14 50 50 H 1.08997 * 109.47040 * 60.00673 * 18 15 14 51 51 H 0.97006 * 120.00091 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8945 1.0273 0.0000 4 6 2.0410 -0.7235 -1.2480 5 7 3.5093 -0.7421 -1.2378 6 6 4.0374 -1.3059 -2.4873 7 6 4.0238 -1.4732 -0.0718 8 1 5.1129 -1.4965 -0.1081 9 6 3.4828 -2.9043 -0.0884 10 6 3.5712 -0.7719 1.2109 11 6 2.0413 -0.7238 1.2488 12 1 1.6452 -1.7391 1.2691 13 7 1.6024 -0.0016 2.4505 14 6 1.5395 -0.9001 3.6110 15 6 1.0805 -0.1137 4.8405 16 6 2.0728 1.0160 5.1232 17 6 -0.3057 0.4788 4.5785 18 6 1.0156 -1.0493 6.0493 19 6 0.5628 -0.2748 7.2602 20 1 0.3429 0.7792 7.1760 21 6 0.4293 -0.9118 8.4757 22 7 0.6976 -2.1952 8.5784 23 14 -0.1312 0.0482 9.9768 24 1 -1.6126 0.0008 10.0699 25 1 0.4611 -0.5530 11.1986 26 1 0.3121 1.4604 9.8552 27 1 -0.3633 0.5123 0.8908 28 1 -0.3632 0.5154 -0.8892 29 1 -0.3632 -1.0277 -0.0018 30 1 1.6649 -1.7465 -1.2544 31 1 1.6907 -0.2023 -2.1389 32 1 3.7603 -0.6620 -3.3220 33 1 5.1235 -1.3730 -2.4252 34 1 3.6200 -2.3010 -2.6418 35 1 2.3936 -2.8814 -0.0517 36 1 3.8050 -3.4040 -1.0019 37 1 3.8639 -3.4469 0.7767 38 1 3.9678 0.2433 1.2299 39 1 3.9395 -1.3228 2.0763 40 1 0.7144 0.4518 2.2957 41 1 0.8329 -1.7051 3.4094 42 1 2.5272 -1.3219 3.7978 43 1 2.1195 1.6827 4.2620 44 1 1.7459 1.5760 5.9993 45 1 3.0603 0.5940 5.3097 46 1 -1.0127 -0.3261 4.3771 47 1 -0.6330 1.0387 5.4546 48 1 -0.2591 1.1454 3.7174 49 1 0.3088 -1.8543 5.8482 50 1 2.0032 -1.4710 6.2358 51 1 0.6040 -2.6434 9.4337 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348208768.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:09 Heat of formation + Delta-G solvation = -19.916856 kcal Electronic energy + Delta-G solvation = -23986.321946 eV Core-core repulsion = 20919.457266 eV Total energy + Delta-G solvation = -3066.864680 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.11602 -37.49307 -35.26515 -33.06795 -32.39063 -31.09743 -28.17734 -27.11862 -26.71256 -26.28455 -25.49435 -24.69676 -22.88319 -21.64193 -21.14567 -18.79984 -17.79042 -16.34137 -16.18269 -15.73959 -15.15120 -14.99226 -14.53628 -14.28871 -13.86442 -13.71378 -13.54174 -13.06415 -13.00538 -12.71663 -12.57543 -12.36489 -12.32559 -12.08248 -11.96347 -11.77940 -11.74439 -11.41984 -11.04965 -10.91531 -10.85898 -10.78879 -10.68884 -10.51814 -10.41389 -10.22956 -10.13510 -10.00561 -9.63415 -8.96949 -8.78499 -8.42732 -8.29382 -7.97800 -5.93970 -3.93853 3.34696 3.41317 3.44479 3.75657 4.38472 4.52246 4.61164 4.68882 4.85565 5.02679 5.08387 5.12402 5.26258 5.27838 5.38564 5.41874 5.45012 5.47598 5.54918 5.63509 5.66792 5.71254 5.79030 5.81008 5.85373 5.90076 6.00602 6.05217 6.06517 6.10209 6.24313 6.31961 6.39489 6.47126 6.57213 6.71605 6.84249 6.87140 6.94539 6.96833 7.24912 7.30196 7.31332 7.50254 7.72698 7.79313 7.89684 8.06685 8.51431 9.11655 9.68804 11.17730 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.032620 B = 0.003430 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.159248 B = 8161.163225 C = 8516.158226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.090 4.090 3 H 0.086 0.914 4 C 0.061 3.939 5 N -0.535 5.535 6 C 0.024 3.976 7 C 0.081 3.919 8 H 0.081 0.919 9 C -0.190 4.190 10 C -0.098 4.098 11 C 0.091 3.909 12 H 0.039 0.961 13 N -0.683 5.683 14 C 0.072 3.928 15 C -0.058 4.058 16 C -0.115 4.115 17 C -0.128 4.128 18 C 0.034 3.966 19 C -0.506 4.506 20 H 0.059 0.941 21 C 0.054 3.946 22 N -0.898 5.898 23 Si 0.887 3.113 24 H -0.282 1.282 25 H -0.288 1.288 26 H -0.274 1.274 27 H 0.061 0.939 28 H 0.057 0.943 29 H 0.051 0.949 30 H 0.036 0.964 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.025 0.975 35 H 0.061 0.939 36 H 0.052 0.948 37 H 0.063 0.937 38 H 0.077 0.923 39 H 0.067 0.933 40 H 0.338 0.662 41 H 0.020 0.980 42 H 0.064 0.936 43 H 0.043 0.957 44 H 0.053 0.947 45 H 0.038 0.962 46 H 0.039 0.961 47 H 0.063 0.937 48 H 0.032 0.968 49 H 0.011 0.989 50 H 0.014 0.986 51 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.718 1.705 -21.407 21.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.109 4.109 3 H 0.105 0.895 4 C -0.068 4.068 5 N -0.259 5.259 6 C -0.125 4.125 7 C -0.028 4.028 8 H 0.099 0.901 9 C -0.248 4.248 10 C -0.137 4.137 11 C -0.019 4.019 12 H 0.057 0.943 13 N -0.316 5.316 14 C -0.057 4.057 15 C -0.059 4.059 16 C -0.172 4.172 17 C -0.186 4.186 18 C -0.003 4.003 19 C -0.544 4.544 20 H 0.077 0.923 21 C -0.146 4.146 22 N -0.538 5.538 23 Si 0.715 3.285 24 H -0.209 1.209 25 H -0.214 1.214 26 H -0.199 1.199 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.054 0.946 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.044 0.956 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.082 0.918 38 H 0.096 0.904 39 H 0.086 0.914 40 H 0.160 0.840 41 H 0.038 0.962 42 H 0.083 0.917 43 H 0.062 0.938 44 H 0.072 0.928 45 H 0.058 0.942 46 H 0.058 0.942 47 H 0.082 0.918 48 H 0.051 0.949 49 H 0.030 0.970 50 H 0.033 0.967 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 4.512 2.288 -21.092 21.690 hybrid contribution -1.397 -1.138 0.674 1.924 sum 3.115 1.151 -20.418 20.687 Atomic orbital electron populations 1.21865 0.95214 1.01785 1.02113 1.21305 0.94852 1.01075 0.93678 0.89538 1.22126 0.87360 0.99011 0.98276 1.62165 1.08094 1.53408 1.02213 1.22356 1.00323 0.97688 0.92107 1.21762 0.99257 0.90948 0.90855 0.90051 1.22519 1.02211 0.98103 1.01995 1.21571 0.95262 1.01627 0.95196 1.21567 0.95391 0.95409 0.89532 0.94335 1.60612 1.35765 1.32061 1.03167 1.22120 0.99902 0.93388 0.90272 1.20625 0.94251 0.96525 0.94483 1.21587 0.97953 0.97682 1.00003 1.21766 0.96944 0.99593 1.00264 1.19113 0.96866 0.93692 0.90653 1.21248 1.44040 0.95664 0.93445 0.92295 1.25018 0.95887 0.94836 0.98890 1.69970 1.49730 1.09124 1.24991 0.86670 0.78728 0.80253 0.82807 1.20860 1.21393 1.19894 0.91961 0.92379 0.92939 0.94564 0.90988 0.91612 0.91523 0.95623 0.91998 0.92945 0.91793 0.90441 0.91450 0.83997 0.96197 0.91728 0.93837 0.92804 0.94238 0.94209 0.91754 0.94873 0.97040 0.96731 0.93207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.00 37.16 0.33 -1.15 16 2 C -0.09 -0.97 2.52 -90.54 -0.23 -1.19 16 3 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 4 C 0.06 0.59 4.45 -3.83 -0.02 0.58 16 5 N -0.54 -5.42 4.86 -234.86 -1.14 -6.56 16 6 C 0.02 0.19 9.14 60.06 0.55 0.74 16 7 C 0.08 0.84 2.93 -67.68 -0.20 0.65 16 8 H 0.08 0.82 8.04 -51.93 -0.42 0.40 16 9 C -0.19 -1.90 8.18 37.16 0.30 -1.59 16 10 C -0.10 -1.21 5.10 -26.65 -0.14 -1.34 16 11 C 0.09 1.14 1.70 -67.59 -0.12 1.03 16 12 H 0.04 0.52 6.22 -51.93 -0.32 0.20 16 13 N -0.68 -9.94 5.52 -106.59 -0.59 -10.53 16 14 C 0.07 1.26 4.45 -3.82 -0.02 1.24 16 15 C -0.06 -1.17 0.60 -154.51 -0.09 -1.27 16 16 C -0.11 -2.26 8.06 37.16 0.30 -1.96 16 17 C -0.13 -2.40 7.89 37.16 0.29 -2.11 16 18 C 0.03 0.87 4.04 -27.88 -0.11 0.76 16 19 C -0.51 -13.92 7.65 -34.44 -0.26 -14.19 16 20 H 0.06 1.58 5.68 -52.49 -0.30 1.28 16 21 C 0.05 1.54 5.46 -17.82 -0.10 1.45 16 22 N -0.90 -27.04 13.29 55.43 0.74 -26.30 16 23 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 24 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 26 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 27 H 0.06 0.65 6.32 -51.93 -0.33 0.32 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.04 0.36 6.19 -51.93 -0.32 0.04 16 31 H 0.07 0.64 8.12 -51.93 -0.42 0.22 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.50 8.02 -51.93 -0.42 0.08 16 34 H 0.03 0.20 6.87 -51.93 -0.36 -0.15 16 35 H 0.06 0.66 4.80 -51.93 -0.25 0.41 16 36 H 0.05 0.47 6.73 -51.93 -0.35 0.12 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.07 0.89 7.52 -51.93 -0.39 0.50 16 40 H 0.34 4.77 4.37 -39.29 -0.17 4.59 16 41 H 0.02 0.36 8.06 -51.93 -0.42 -0.06 16 42 H 0.06 1.18 7.49 -51.93 -0.39 0.79 16 43 H 0.04 0.77 7.60 -51.93 -0.39 0.38 16 44 H 0.05 1.13 6.62 -51.93 -0.34 0.79 16 45 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 47 H 0.06 1.30 6.62 -51.93 -0.34 0.96 16 48 H 0.03 0.53 6.57 -51.93 -0.34 0.18 16 49 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 50 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 51 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 367.27 15.07 5.53 5.53 Total: -1.00 -28.86 367.27 -9.62 -38.47 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -9.64 Total: 1.04 kcal Atomic # 6 Polarization: -18.87 SS G_CDS: 0.50 Total: -18.37 kcal Atomic # 7 Polarization: -42.40 SS G_CDS: -0.99 Total: -43.39 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -28.86 -9.62 -38.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348208768.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.555 kcal (2) G-P(sol) polarization free energy of solvation -28.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds