Wall clock time and date at job start Tue Mar 31 2020 06:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.50142 * 2 1 4 4 C 1.53044 * 109.49948 * 239.92443 * 2 1 3 5 5 N 1.46848 * 109.51792 * 180.87894 * 4 2 1 6 6 C 1.46906 * 110.99535 * 185.83763 * 5 4 2 7 7 C 1.46850 * 111.19941 * 61.74375 * 5 4 2 8 8 H 1.08994 * 109.46358 * 58.26863 * 7 5 4 9 9 C 1.53005 * 109.46084 * 178.23889 * 7 5 4 10 10 C 1.53036 * 109.52003 * 298.25338 * 7 5 4 11 11 C 1.53117 * 109.28029 * 59.18340 * 10 7 5 12 12 H 1.09004 * 109.52102 * 182.44157 * 11 10 7 13 13 N 1.46902 * 109.57647 * 62.27793 * 11 10 7 14 14 C 1.46899 * 110.99677 * 85.28750 * 13 11 10 15 15 C 1.53001 * 109.46700 * 179.97438 * 14 13 11 16 16 C 1.52999 * 109.47414 * 299.99881 * 15 14 13 17 17 C 1.52993 * 109.47174 * 60.00158 * 15 14 13 18 18 C 1.53008 * 109.46800 * 180.02562 * 15 14 13 19 19 C 1.50703 * 109.46889 * 179.97438 * 18 15 14 20 20 H 1.07995 * 119.99906 * 0.02562 * 19 18 15 21 21 C 1.37870 * 119.99671 * 179.97438 * 19 18 15 22 22 N 1.31516 * 120.00537 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99792 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47387 * 359.97438 * 23 21 19 25 25 H 1.48505 * 109.47504 * 119.99933 * 23 21 19 26 26 H 1.48502 * 109.47153 * 239.99984 * 23 21 19 27 27 H 1.09001 * 109.47578 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.47205 * 300.07580 * 1 2 3 29 29 H 1.08998 * 109.47510 * 60.07830 * 1 2 3 30 30 H 1.08994 * 109.46367 * 60.86557 * 4 2 1 31 31 H 1.09001 * 109.46127 * 300.89418 * 4 2 1 32 32 H 1.08992 * 109.47459 * 56.04492 * 6 5 4 33 33 H 1.09004 * 109.47040 * 176.04643 * 6 5 4 34 34 H 1.09000 * 109.47033 * 296.04595 * 6 5 4 35 35 H 1.08995 * 109.46794 * 59.99905 * 9 7 5 36 36 H 1.08996 * 109.46594 * 180.02562 * 9 7 5 37 37 H 1.08995 * 109.46928 * 299.99854 * 9 7 5 38 38 H 1.09000 * 109.50493 * 299.23560 * 10 7 5 39 39 H 1.09007 * 109.53509 * 179.14346 * 10 7 5 40 40 H 1.00894 * 110.99626 * 321.33480 * 13 11 10 41 41 H 1.08996 * 109.47110 * 300.00273 * 14 13 11 42 42 H 1.09000 * 109.47193 * 59.99857 * 14 13 11 43 43 H 1.08996 * 109.47151 * 59.99854 * 16 15 14 44 44 H 1.08995 * 109.47190 * 180.02562 * 16 15 14 45 45 H 1.09000 * 109.46960 * 300.00389 * 16 15 14 46 46 H 1.09003 * 109.47078 * 59.99864 * 17 15 14 47 47 H 1.09003 * 109.47016 * 179.97438 * 17 15 14 48 48 H 1.09003 * 109.47112 * 299.99669 * 17 15 14 49 49 H 1.08996 * 109.46625 * 299.99934 * 18 15 14 50 50 H 1.09000 * 109.47198 * 59.99841 * 18 15 14 51 51 H 0.96994 * 120.00663 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7230 -1.2484 5 7 3.5091 -0.7416 -1.2382 6 6 4.0371 -1.3049 -2.4881 7 6 4.0229 -1.4730 -0.0731 8 1 3.6374 -2.4924 -0.0853 9 6 5.5517 -1.5056 -0.1251 10 6 3.5711 -0.7724 1.2103 11 6 2.0412 -0.7243 1.2484 12 1 1.7157 -0.1878 2.1397 13 7 1.5063 -2.0922 1.2760 14 6 1.4540 -2.6093 2.6500 15 6 0.8923 -4.0325 2.6381 16 6 -0.5176 -4.0194 2.0441 17 6 1.7950 -4.9300 1.7894 18 6 0.8372 -4.5709 4.0692 19 6 0.2834 -5.9725 4.0576 20 1 -0.0004 -6.4332 3.1230 21 6 0.1401 -6.6668 5.2401 22 7 0.4863 -6.1059 6.3782 23 14 -0.5457 -8.4043 5.2257 24 1 -0.8567 -8.8022 3.8292 25 1 0.4593 -9.3379 5.7947 26 1 -1.7853 -8.4539 6.0418 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5150 0.8894 29 1 -0.3634 0.5126 -0.8906 30 1 1.6904 -0.2015 -2.1390 31 1 1.6646 -1.7460 -1.2551 32 1 3.6444 -0.7420 -3.3348 33 1 5.1253 -1.2426 -2.4836 34 1 3.7333 -2.3483 -2.5732 35 1 5.9374 -0.4862 -0.1133 36 1 5.9331 -2.0488 0.7395 37 1 5.8735 -2.0053 -1.0387 38 1 3.9678 0.2427 1.2298 39 1 3.9396 -1.3236 2.0756 40 1 2.0445 -2.7029 0.6800 41 1 2.4583 -2.6182 3.0733 42 1 0.8105 -1.9702 3.2545 43 1 -0.4788 -3.6357 1.0246 44 1 -0.9179 -5.0332 2.0360 45 1 -1.1607 -3.3800 2.6487 46 1 2.7995 -4.9393 2.2126 47 1 1.3951 -5.9439 1.7813 48 1 1.8338 -4.5462 0.7699 49 1 1.8415 -4.5801 4.4928 50 1 0.1939 -3.9314 4.6736 51 1 0.3858 -6.5945 7.2100 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348208769.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:11 Heat of formation + Delta-G solvation = -20.873099 kcal Electronic energy + Delta-G solvation = -24328.917895 eV Core-core repulsion = 21262.011749 eV Total energy + Delta-G solvation = -3066.906146 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.05316 -37.28858 -35.14703 -33.33222 -32.39347 -30.95453 -28.50471 -27.06267 -26.53863 -26.32519 -25.11254 -24.46334 -22.89178 -22.20354 -20.80931 -18.79467 -17.86675 -16.25382 -15.91929 -15.64525 -15.26877 -14.94622 -14.71647 -14.39850 -14.07357 -13.67104 -13.26703 -12.98207 -12.82994 -12.65660 -12.34849 -12.30492 -12.04235 -12.00646 -11.93804 -11.75889 -11.71596 -11.43198 -11.13376 -10.97055 -10.86463 -10.74498 -10.72632 -10.50768 -10.43639 -10.22051 -10.16522 -10.00450 -9.66913 -8.99545 -8.79738 -8.37662 -8.31248 -7.96778 -5.95579 -3.95575 3.32458 3.40404 3.43816 3.78516 4.44411 4.53489 4.64924 4.81485 4.83368 5.03338 5.19741 5.23485 5.31157 5.38055 5.40358 5.48907 5.56867 5.61848 5.67220 5.69233 5.74677 5.78098 5.81147 5.85204 5.89187 5.95365 6.00652 6.02371 6.13928 6.21944 6.27717 6.33329 6.35952 6.51883 6.58416 6.68115 6.81014 6.83613 6.99945 7.03408 7.21829 7.26448 7.28303 7.47159 7.70649 7.75211 7.87518 8.05012 8.49614 9.10142 9.67310 11.16124 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.024522 B = 0.003917 C = 0.003750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.549107 B = 7146.136988 C = 7464.739107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.072 4.072 3 H 0.071 0.929 4 C 0.061 3.939 5 N -0.539 5.539 6 C 0.021 3.979 7 C 0.081 3.919 8 H 0.041 0.959 9 C -0.147 4.147 10 C -0.142 4.142 11 C 0.087 3.913 12 H 0.077 0.923 13 N -0.678 5.678 14 C 0.070 3.930 15 C -0.057 4.057 16 C -0.115 4.115 17 C -0.127 4.127 18 C 0.034 3.966 19 C -0.506 4.506 20 H 0.059 0.941 21 C 0.054 3.946 22 N -0.897 5.897 23 Si 0.886 3.114 24 H -0.273 1.273 25 H -0.286 1.286 26 H -0.285 1.285 27 H 0.072 0.928 28 H 0.050 0.950 29 H 0.042 0.958 30 H 0.068 0.932 31 H 0.042 0.958 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.024 0.976 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.056 0.944 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.335 0.665 41 H 0.021 0.979 42 H 0.065 0.935 43 H 0.041 0.959 44 H 0.053 0.947 45 H 0.039 0.961 46 H 0.039 0.961 47 H 0.063 0.937 48 H 0.029 0.971 49 H 0.012 0.988 50 H 0.015 0.985 51 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.253 12.228 -15.302 20.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.092 4.092 3 H 0.089 0.911 4 C -0.067 4.067 5 N -0.264 5.264 6 C -0.127 4.127 7 C -0.027 4.027 8 H 0.059 0.941 9 C -0.205 4.205 10 C -0.181 4.181 11 C -0.024 4.024 12 H 0.095 0.905 13 N -0.310 5.310 14 C -0.058 4.058 15 C -0.058 4.058 16 C -0.172 4.172 17 C -0.184 4.184 18 C -0.004 4.004 19 C -0.544 4.544 20 H 0.077 0.923 21 C -0.146 4.146 22 N -0.538 5.538 23 Si 0.715 3.285 24 H -0.198 1.198 25 H -0.212 1.212 26 H -0.211 1.211 27 H 0.091 0.909 28 H 0.070 0.930 29 H 0.061 0.939 30 H 0.087 0.913 31 H 0.060 0.940 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.042 0.958 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.156 0.844 41 H 0.040 0.960 42 H 0.083 0.917 43 H 0.060 0.940 44 H 0.072 0.928 45 H 0.058 0.942 46 H 0.058 0.942 47 H 0.082 0.918 48 H 0.048 0.952 49 H 0.030 0.970 50 H 0.033 0.967 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 5.762 12.866 -15.086 20.648 hybrid contribution 0.396 -2.007 0.341 2.074 sum 6.158 10.860 -14.745 19.320 Atomic orbital electron populations 1.21655 0.94310 1.03111 1.00353 1.21106 0.95982 0.98562 0.93526 0.91070 1.22132 0.86365 0.99793 0.98399 1.61968 1.08512 1.53940 1.01979 1.22408 1.00864 0.97477 0.91941 1.21579 0.95200 0.95166 0.90753 0.94140 1.21910 0.94504 1.02337 1.01735 1.22277 0.97854 1.01652 0.96349 1.21635 0.91282 0.91376 0.98099 0.90504 1.60734 1.56973 1.02143 1.11182 1.22117 0.98521 0.97017 0.88168 1.20613 0.94779 0.91409 0.98977 1.21585 0.95901 1.01018 0.98693 1.21753 0.98950 1.00902 0.96823 1.19121 0.96802 0.95649 0.88783 1.21277 1.41218 0.99235 0.92660 0.92295 1.25010 0.95910 0.97878 0.95784 1.69973 1.48801 1.37248 0.97732 0.86625 0.78704 0.85203 0.78002 1.19797 1.21207 1.21149 0.90882 0.93044 0.93907 0.91309 0.94007 0.91672 0.91143 0.95764 0.91879 0.92156 0.92550 0.90930 0.91442 0.84393 0.96026 0.91654 0.93996 0.92829 0.94168 0.94204 0.91772 0.95205 0.96997 0.96699 0.93240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.02 37.16 0.34 -1.18 16 2 C -0.07 -0.80 2.71 -90.54 -0.25 -1.05 16 3 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 4 C 0.06 0.66 4.53 -3.83 -0.02 0.64 16 5 N -0.54 -5.77 4.75 -234.92 -1.12 -6.88 16 6 C 0.02 0.19 9.06 60.07 0.54 0.74 16 7 C 0.08 0.90 2.21 -67.72 -0.15 0.75 16 8 H 0.04 0.51 6.35 -51.93 -0.33 0.18 16 9 C -0.15 -1.43 8.77 37.16 0.33 -1.11 16 10 C -0.14 -1.64 4.96 -26.65 -0.13 -1.78 16 11 C 0.09 1.07 2.34 -67.59 -0.16 0.91 16 12 H 0.08 0.99 7.80 -51.93 -0.41 0.59 16 13 N -0.68 -9.53 4.19 -106.59 -0.45 -9.97 16 14 C 0.07 1.20 4.45 -3.82 -0.02 1.18 16 15 C -0.06 -1.14 0.60 -154.51 -0.09 -1.23 16 16 C -0.11 -2.21 8.06 37.16 0.30 -1.91 16 17 C -0.13 -2.37 7.89 37.15 0.29 -2.08 16 18 C 0.03 0.85 4.04 -27.88 -0.11 0.74 16 19 C -0.51 -13.84 7.65 -34.44 -0.26 -14.11 16 20 H 0.06 1.58 5.68 -52.49 -0.30 1.28 16 21 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 22 N -0.90 -26.90 13.29 55.43 0.74 -26.17 16 23 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 24 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 27 H 0.07 0.93 7.54 -51.93 -0.39 0.54 16 28 H 0.05 0.57 8.14 -51.92 -0.42 0.15 16 29 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.69 8.09 -51.93 -0.42 0.27 16 31 H 0.04 0.51 7.29 -51.93 -0.38 0.13 16 32 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 33 H 0.07 0.59 6.20 -51.93 -0.32 0.27 16 34 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.50 6.32 -51.93 -0.33 0.17 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.07 0.84 7.44 -51.92 -0.39 0.45 16 40 H 0.33 4.78 3.78 -39.30 -0.15 4.63 16 41 H 0.02 0.38 7.43 -51.93 -0.39 -0.01 16 42 H 0.06 1.16 8.06 -51.93 -0.42 0.74 16 43 H 0.04 0.72 7.60 -51.93 -0.39 0.33 16 44 H 0.05 1.11 6.61 -51.93 -0.34 0.77 16 45 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.06 1.30 6.62 -51.93 -0.34 0.96 16 48 H 0.03 0.48 6.57 -51.93 -0.34 0.14 16 49 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 50 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 51 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 370.17 15.07 5.58 5.58 Total: -1.00 -28.31 370.17 -9.60 -37.91 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -9.84 Total: 0.91 kcal Atomic # 6 Polarization: -18.52 SS G_CDS: 0.51 Total: -18.01 kcal Atomic # 7 Polarization: -42.20 SS G_CDS: -0.83 Total: -43.02 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -28.31 -9.60 -37.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348208769.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.037 kcal (2) G-P(sol) polarization free energy of solvation -28.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds