Wall clock time and date at job start Tue Mar 31 2020 06:05:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46903 * 109.46632 * 2 1 4 4 C 1.46842 * 111.00077 * 65.79321 * 3 2 1 5 5 C 1.53041 * 109.52407 * 185.84059 * 4 3 2 6 6 C 1.53124 * 109.27510 * 300.81747 * 5 4 3 7 7 H 1.09000 * 109.52368 * 297.74991 * 6 5 4 8 8 N 1.46898 * 109.52221 * 177.55717 * 6 5 4 9 9 C 1.46898 * 110.99684 * 85.31828 * 8 6 5 10 10 C 1.53003 * 109.47217 * 179.97438 * 9 8 6 11 11 C 1.53004 * 109.47217 * 300.00030 * 10 9 8 12 12 C 1.53003 * 109.47115 * 59.99921 * 10 9 8 13 13 C 1.53000 * 109.47469 * 180.02562 * 10 9 8 14 14 C 1.50698 * 109.47265 * 179.97438 * 13 10 9 15 15 H 1.07999 * 119.99759 * 0.02562 * 14 13 10 16 16 C 1.37879 * 119.99997 * 179.97438 * 14 13 10 17 17 N 1.31515 * 119.99734 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00128 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.46928 * 59.99834 * 18 16 14 20 20 H 1.48499 * 109.47351 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47199 * 300.00314 * 18 16 14 22 22 C 1.53123 * 109.15980 * 57.65355 * 6 5 4 23 23 H 1.09006 * 109.50264 * 62.28502 * 22 6 5 24 24 C 1.53000 * 109.50348 * 182.40196 * 22 6 5 25 25 C 1.46846 * 110.99717 * 190.00023 * 3 2 1 26 26 H 1.08994 * 109.47164 * 60.00335 * 1 2 3 27 27 H 1.09003 * 109.46861 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47148 * 299.99641 * 1 2 3 29 29 H 1.08996 * 109.47126 * 240.00192 * 2 1 3 30 30 H 1.08994 * 109.47164 * 119.99665 * 2 1 3 31 31 H 1.09006 * 109.46447 * 305.84971 * 4 3 2 32 32 H 1.08991 * 109.46739 * 65.83356 * 4 3 2 33 33 H 1.08997 * 109.50282 * 60.75542 * 5 4 3 34 34 H 1.08997 * 109.50652 * 180.83934 * 5 4 3 35 35 H 1.00900 * 110.99982 * 209.26764 * 8 6 5 36 36 H 1.08997 * 109.47435 * 299.99989 * 9 8 6 37 37 H 1.09002 * 109.47454 * 60.00101 * 9 8 6 38 38 H 1.09002 * 109.46689 * 59.99761 * 11 10 9 39 39 H 1.08997 * 109.47040 * 179.97438 * 11 10 9 40 40 H 1.09004 * 109.47244 * 300.00308 * 11 10 9 41 41 H 1.08997 * 109.46853 * 60.00356 * 12 10 9 42 42 H 1.08997 * 109.46864 * 179.97438 * 12 10 9 43 43 H 1.08998 * 109.46776 * 300.00360 * 12 10 9 44 44 H 1.09003 * 109.46839 * 299.99699 * 13 10 9 45 45 H 1.09004 * 109.47217 * 59.99548 * 13 10 9 46 46 H 0.97005 * 119.99333 * 179.97438 * 17 16 14 47 47 H 1.08999 * 109.47150 * 179.80378 * 24 22 6 48 48 H 1.09001 * 109.47166 * 299.80966 * 24 22 6 49 49 H 1.08995 * 109.46878 * 59.80446 * 24 22 6 50 50 H 1.08999 * 109.46089 * 54.14588 * 25 3 2 51 51 H 1.08998 * 109.46294 * 294.17617 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.6650 2.0686 1.2503 5 6 2.0605 3.5440 1.1566 6 6 3.5674 3.6484 0.9057 7 1 4.1078 3.2134 1.7464 8 7 3.9436 5.0606 0.7566 9 6 4.1901 5.6807 2.0652 10 6 4.5790 7.1474 1.8695 11 6 5.8483 7.2294 1.0191 12 6 3.4419 7.8864 1.1611 13 6 4.8364 7.7931 3.2325 14 6 5.2201 9.2376 3.0396 15 1 5.2744 9.6536 2.0445 16 6 5.5006 10.0284 4.1337 17 7 5.4339 9.5219 5.3456 18 14 5.9769 11.8188 3.8946 19 1 4.8741 12.5367 3.2064 20 1 6.2266 12.4455 5.2175 21 1 7.2092 11.8973 3.0697 22 6 3.9173 2.8876 -0.3763 23 1 3.4072 3.3471 -1.2229 24 6 5.4297 2.9362 -0.6025 25 6 3.4679 1.4312 -0.2381 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8901 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5137 0.8900 31 1 0.5903 1.9905 1.4148 32 1 2.1944 1.6030 2.0816 33 1 1.5212 4.0138 0.3341 34 1 1.8108 4.0478 2.0904 35 1 4.7460 5.1593 0.1528 36 1 3.2860 5.6219 2.6713 37 1 5.0005 5.1545 2.5698 38 1 5.6653 6.7693 0.0481 39 1 6.1251 8.2744 0.8793 40 1 6.6584 6.7029 1.5238 41 1 2.5377 7.8280 1.7669 42 1 3.7188 8.9314 1.0221 43 1 3.2590 7.4262 0.1901 44 1 3.9323 7.7348 3.8387 45 1 5.6467 7.2665 3.7368 46 1 5.6317 10.0782 6.1152 47 1 5.6786 2.3915 -1.5132 48 1 5.7492 3.9737 -0.7007 49 1 5.9388 2.4781 0.2454 50 1 3.7027 0.8902 -1.1547 51 1 3.9887 0.9684 0.6002 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348235505.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:29 Heat of formation + Delta-G solvation = -25.363916 kcal Electronic energy + Delta-G solvation = -23588.740546 eV Core-core repulsion = 20521.639663 eV Total energy + Delta-G solvation = -3067.100882 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.70650 -37.48263 -35.52481 -32.94658 -32.14334 -31.52844 -29.44932 -26.99436 -26.38362 -26.27070 -25.31112 -23.62507 -22.78406 -21.62515 -20.90627 -19.71994 -17.79943 -16.34646 -16.17510 -15.54926 -15.40511 -14.94895 -14.68555 -14.33625 -13.99102 -13.77628 -13.52612 -13.13407 -12.96888 -12.90525 -12.42630 -12.39553 -12.20754 -11.96008 -11.86472 -11.80623 -11.68733 -11.31619 -11.08265 -10.97326 -10.87103 -10.80347 -10.69765 -10.56327 -10.43971 -10.25075 -10.11912 -10.04103 -9.63704 -8.96928 -8.79475 -8.48414 -8.29024 -7.99906 -5.93776 -3.93753 3.36300 3.40791 3.43156 3.68763 4.38869 4.52441 4.58975 4.71853 4.83419 4.96432 5.00804 5.18966 5.25066 5.25506 5.37486 5.41928 5.46164 5.48857 5.57090 5.59379 5.63367 5.72976 5.74513 5.81949 5.83915 5.91990 5.97400 6.01412 6.06184 6.09747 6.22572 6.31814 6.38608 6.46269 6.56916 6.71371 6.84102 6.87037 6.94412 6.95038 7.24904 7.29883 7.30997 7.49636 7.72502 7.78852 7.89656 8.06777 8.51448 9.11514 9.68818 11.17910 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.033598 B = 0.003157 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.190781 B = 8865.782593 C = 9246.270366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.050 3.950 3 N -0.538 5.538 4 C 0.054 3.946 5 C -0.104 4.104 6 C 0.092 3.908 7 H 0.035 0.965 8 N -0.682 5.682 9 C 0.071 3.929 10 C -0.058 4.058 11 C -0.128 4.128 12 C -0.115 4.115 13 C 0.034 3.966 14 C -0.506 4.506 15 H 0.058 0.942 16 C 0.054 3.946 17 N -0.898 5.898 18 Si 0.888 3.112 19 H -0.277 1.277 20 H -0.289 1.289 21 H -0.278 1.278 22 C -0.090 4.090 23 H 0.087 0.913 24 C -0.152 4.152 25 C 0.065 3.935 26 H 0.063 0.937 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.072 0.928 30 H 0.030 0.970 31 H 0.077 0.923 32 H 0.029 0.971 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.339 0.661 36 H 0.064 0.936 37 H 0.020 0.980 38 H 0.032 0.968 39 H 0.064 0.936 40 H 0.039 0.961 41 H 0.039 0.961 42 H 0.053 0.947 43 H 0.043 0.957 44 H 0.014 0.986 45 H 0.011 0.989 46 H 0.259 0.741 47 H 0.057 0.943 48 H 0.062 0.938 49 H 0.052 0.948 50 H 0.073 0.927 51 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.603 -18.680 -11.464 22.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.077 4.077 3 N -0.263 5.263 4 C -0.075 4.075 5 C -0.142 4.142 6 C -0.019 4.019 7 H 0.053 0.947 8 N -0.315 5.315 9 C -0.057 4.057 10 C -0.058 4.058 11 C -0.186 4.186 12 C -0.172 4.172 13 C -0.003 4.003 14 C -0.545 4.545 15 H 0.076 0.924 16 C -0.146 4.146 17 N -0.538 5.538 18 Si 0.716 3.284 19 H -0.203 1.203 20 H -0.215 1.215 21 H -0.204 1.204 22 C -0.109 4.109 23 H 0.105 0.895 24 C -0.210 4.210 25 C -0.063 4.063 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.090 0.910 30 H 0.048 0.952 31 H 0.095 0.905 32 H 0.047 0.953 33 H 0.096 0.904 34 H 0.085 0.915 35 H 0.160 0.840 36 H 0.083 0.917 37 H 0.038 0.962 38 H 0.051 0.949 39 H 0.083 0.917 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.072 0.928 43 H 0.062 0.938 44 H 0.033 0.967 45 H 0.030 0.970 46 H 0.069 0.931 47 H 0.076 0.924 48 H 0.080 0.920 49 H 0.071 0.929 50 H 0.091 0.909 51 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -6.449 -18.164 -11.693 22.544 hybrid contribution 1.588 0.155 1.071 1.922 sum -4.861 -18.008 -10.622 21.465 Atomic orbital electron populations 1.21809 0.94865 1.01353 1.02664 1.22048 0.96184 0.89038 1.00464 1.61957 1.13753 1.15089 1.35471 1.22178 1.00761 0.95020 0.89498 1.21570 0.95733 0.94160 1.02734 1.21541 0.95809 0.88862 0.95651 0.94699 1.60620 1.43200 1.13078 1.14647 1.22129 0.98987 0.95540 0.89085 1.20623 0.94572 0.91876 0.98769 1.21768 0.97308 1.02237 0.97267 1.21587 0.97168 0.99842 0.98639 1.19113 0.96546 0.95004 0.89653 1.21209 1.45333 0.95435 0.92499 0.92352 1.25017 0.95971 0.98242 0.95379 1.69962 1.49955 1.36116 0.97795 0.86728 0.79000 0.85582 0.77098 1.20300 1.21466 1.20380 1.21310 0.95723 0.94746 0.99112 0.89467 1.21863 0.95308 1.02219 1.01575 1.22088 0.87215 0.96716 1.00308 0.91768 0.92497 0.92561 0.90994 0.95215 0.90456 0.95310 0.90382 0.91468 0.83978 0.91711 0.96169 0.94892 0.91739 0.94192 0.94230 0.92801 0.93841 0.96740 0.97024 0.93142 0.92365 0.91955 0.92903 0.90861 0.95166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.84 37.16 0.37 -0.76 16 2 C 0.05 0.43 5.68 -3.82 -0.02 0.40 16 3 N -0.54 -5.49 4.66 -234.67 -1.09 -6.59 16 4 C 0.05 0.57 5.29 -3.83 -0.02 0.55 16 5 C -0.10 -1.28 5.59 -26.65 -0.15 -1.43 16 6 C 0.09 1.17 2.01 -67.59 -0.14 1.03 16 7 H 0.04 0.49 7.80 -51.93 -0.41 0.08 16 8 N -0.68 -10.01 5.52 -106.59 -0.59 -10.60 16 9 C 0.07 1.25 4.45 -3.82 -0.02 1.24 16 10 C -0.06 -1.17 0.60 -154.50 -0.09 -1.26 16 11 C -0.13 -2.41 7.89 37.16 0.29 -2.12 16 12 C -0.12 -2.26 8.07 37.16 0.30 -1.96 16 13 C 0.03 0.87 4.04 -27.88 -0.11 0.76 16 14 C -0.51 -13.97 7.65 -34.44 -0.26 -14.23 16 15 H 0.06 1.56 5.68 -52.49 -0.30 1.27 16 16 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 17 N -0.90 -27.08 13.29 55.43 0.74 -26.35 16 18 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 C -0.09 -0.97 2.51 -90.54 -0.23 -1.20 16 23 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 24 C -0.15 -1.49 8.99 37.16 0.33 -1.16 16 25 C 0.07 0.64 4.74 -3.83 -0.02 0.63 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.44 6.43 -51.93 -0.33 0.10 16 29 H 0.07 0.55 7.99 -51.93 -0.41 0.14 16 30 H 0.03 0.25 8.12 -51.93 -0.42 -0.17 16 31 H 0.08 0.77 6.21 -51.93 -0.32 0.44 16 32 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.07 0.89 7.54 -51.93 -0.39 0.50 16 35 H 0.34 4.79 4.37 -39.29 -0.17 4.62 16 36 H 0.06 1.18 7.51 -51.93 -0.39 0.79 16 37 H 0.02 0.37 8.06 -51.93 -0.42 -0.05 16 38 H 0.03 0.52 6.57 -51.93 -0.34 0.18 16 39 H 0.06 1.31 6.62 -51.93 -0.34 0.97 16 40 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.05 1.13 6.62 -51.93 -0.34 0.79 16 43 H 0.04 0.77 7.60 -51.93 -0.39 0.38 16 44 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 46 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 47 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.06 0.65 6.33 -51.93 -0.33 0.32 16 49 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 50 H 0.07 0.65 8.02 -51.93 -0.42 0.23 16 51 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 LS Contribution 374.62 15.07 5.65 5.65 Total: -1.00 -28.90 374.62 -10.13 -39.02 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -9.94 Total: 0.17 kcal Atomic # 6 Polarization: -18.18 SS G_CDS: 0.14 Total: -18.05 kcal Atomic # 7 Polarization: -42.58 SS G_CDS: -0.95 Total: -43.53 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -28.90 -10.13 -39.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348235505.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.660 kcal (2) G-P(sol) polarization free energy of solvation -28.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds