Wall clock time and date at job start Tue Mar 31 2020 06:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46906 * 109.47302 * 2 1 4 4 C 1.46847 * 110.99834 * 66.04134 * 3 2 1 5 5 C 1.53044 * 109.51754 * 185.84111 * 4 3 2 6 6 C 1.53111 * 109.28302 * 300.82131 * 5 4 3 7 7 H 1.09005 * 109.52249 * 297.75494 * 6 5 4 8 8 N 1.46891 * 109.52466 * 177.62500 * 6 5 4 9 9 C 1.46902 * 111.00214 * 85.00396 * 8 6 5 10 10 C 1.53001 * 109.47236 * 180.02562 * 9 8 6 11 11 C 1.52998 * 109.47075 * 299.99419 * 10 9 8 12 12 C 1.52997 * 109.47454 * 59.99595 * 10 9 8 13 13 C 1.52995 * 109.46937 * 179.97438 * 10 9 8 14 14 C 1.50698 * 109.47239 * 180.02562 * 13 10 9 15 15 H 1.08000 * 119.99772 * 359.97438 * 14 13 10 16 16 C 1.37877 * 120.00259 * 179.97438 * 14 13 10 17 17 N 1.31518 * 120.00212 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 120.00148 * 359.97438 * 16 14 13 19 19 H 1.48492 * 109.47352 * 89.99830 * 18 16 14 20 20 H 1.48498 * 109.47304 * 210.00108 * 18 16 14 21 21 H 1.48500 * 109.46780 * 329.99708 * 18 16 14 22 22 C 1.53129 * 109.15942 * 57.65445 * 6 5 4 23 23 H 1.08994 * 109.50117 * 182.36483 * 22 6 5 24 24 C 1.52999 * 109.50109 * 62.28941 * 22 6 5 25 25 C 1.46839 * 111.00039 * 190.25745 * 3 2 1 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00356 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00337 * 1 2 3 29 29 H 1.08998 * 109.47533 * 119.99464 * 2 1 3 30 30 H 1.08996 * 109.47853 * 239.99807 * 2 1 3 31 31 H 1.08998 * 109.46487 * 305.85659 * 4 3 2 32 32 H 1.09001 * 109.46288 * 65.84424 * 4 3 2 33 33 H 1.08995 * 109.50348 * 60.77041 * 5 4 3 34 34 H 1.09001 * 109.49621 * 180.88154 * 5 4 3 35 35 H 1.00897 * 111.00622 * 321.04672 * 8 6 5 36 36 H 1.08999 * 109.46573 * 300.00128 * 9 8 6 37 37 H 1.09002 * 109.47441 * 59.99686 * 9 8 6 38 38 H 1.09000 * 109.46877 * 60.00016 * 11 10 9 39 39 H 1.08999 * 109.47119 * 179.97438 * 11 10 9 40 40 H 1.09007 * 109.47506 * 300.00292 * 11 10 9 41 41 H 1.09008 * 109.47037 * 59.99825 * 12 10 9 42 42 H 1.08998 * 109.47086 * 179.97438 * 12 10 9 43 43 H 1.09000 * 109.46948 * 300.00259 * 12 10 9 44 44 H 1.09006 * 109.47591 * 299.99665 * 13 10 9 45 45 H 1.09002 * 109.47512 * 59.99671 * 13 10 9 46 46 H 0.96997 * 120.00362 * 180.02562 * 17 16 14 47 47 H 1.09002 * 109.47164 * 59.99872 * 24 22 6 48 48 H 1.08994 * 109.47030 * 180.02562 * 24 22 6 49 49 H 1.09001 * 109.46796 * 300.00140 * 24 22 6 50 50 H 1.09004 * 109.46401 * 294.17270 * 25 3 2 51 51 H 1.09000 * 109.46621 * 54.13950 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6703 2.0667 1.2528 5 6 2.0656 3.5423 1.1595 6 6 3.5713 3.6471 0.9025 7 1 4.1151 3.2107 1.7404 8 7 3.9471 5.0594 0.7554 9 6 4.1921 5.6782 2.0650 10 6 4.5795 7.1456 1.8713 11 6 5.8493 7.2300 1.0220 12 6 3.4422 7.8842 1.1631 13 6 4.8341 7.7901 3.2354 14 6 5.2150 9.2356 3.0447 15 1 5.2705 9.6528 2.0501 16 6 5.4928 10.0256 4.1401 17 7 5.8258 11.2870 3.9736 18 14 5.3962 9.3044 5.8605 19 1 6.7195 8.7469 6.2386 20 1 5.0143 10.3690 6.8228 21 1 4.3777 8.2240 5.8877 22 6 3.9159 2.8880 -0.3821 23 1 4.9925 2.9235 -0.5480 24 6 3.1949 3.5348 -1.5665 25 6 3.4669 1.4315 -0.2441 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 1.8934 -0.5137 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 0.5963 1.9884 1.4216 32 1 2.2032 1.5999 2.0812 33 1 1.5228 4.0133 0.3401 34 1 1.8204 4.0445 2.0954 35 1 3.2447 5.5689 0.2405 36 1 3.2874 5.6184 2.6700 37 1 5.0022 5.1517 2.5698 38 1 5.6676 6.7709 0.0503 39 1 6.1251 8.2754 0.8836 40 1 6.6597 6.7038 1.5266 41 1 2.5375 7.8241 1.7682 42 1 3.7180 8.9297 1.0255 43 1 3.2604 7.4251 0.1913 44 1 3.9292 7.7301 3.8402 45 1 5.6442 7.2640 3.7404 46 1 6.0215 11.8427 4.7442 47 1 3.5124 4.5731 -1.6621 48 1 3.4402 2.9938 -2.4804 49 1 2.1183 3.4978 -1.4006 50 1 3.9912 0.9674 0.5913 51 1 3.6979 0.8917 -1.1625 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348235508.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:32 Heat of formation + Delta-G solvation = -19.960493 kcal Electronic energy + Delta-G solvation = -23736.052698 eV Core-core repulsion = 20669.186126 eV Total energy + Delta-G solvation = -3066.866573 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.90686 -37.58581 -35.53514 -32.95091 -32.01074 -31.31000 -29.56814 -27.62204 -26.39758 -26.33796 -25.33245 -23.62168 -22.93676 -21.80036 -21.19720 -18.91041 -17.77460 -16.79454 -16.50673 -15.53652 -15.05054 -14.97251 -14.72744 -14.41527 -14.14454 -13.99321 -13.50286 -13.31652 -13.04959 -12.64686 -12.58196 -12.42928 -12.26578 -12.17371 -11.95352 -11.65015 -11.60439 -11.35273 -11.22395 -11.06765 -10.95810 -10.85235 -10.73983 -10.52522 -10.47332 -10.30504 -10.25580 -9.75180 -9.66186 -9.23287 -8.86901 -8.50291 -8.47857 -8.02805 -5.98141 -3.94030 3.33241 3.40770 3.44187 3.66328 4.35501 4.49841 4.60849 4.66171 4.86600 4.90463 5.04639 5.12042 5.18819 5.21238 5.34988 5.38597 5.40882 5.46444 5.53319 5.60864 5.62998 5.67026 5.71032 5.74323 5.86266 5.89464 5.92627 5.94279 6.05242 6.18959 6.23966 6.27260 6.30809 6.45446 6.50817 6.63449 6.73891 6.83381 6.88557 6.91452 7.11504 7.17763 7.23568 7.36386 7.38402 7.49986 7.71408 7.87928 8.62180 9.08130 9.65159 11.15047 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.030178 B = 0.003383 C = 0.003215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.604973 B = 8274.984487 C = 8708.235556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.050 3.950 3 N -0.534 5.534 4 C 0.059 3.941 5 C -0.148 4.148 6 C 0.091 3.909 7 H 0.069 0.931 8 N -0.678 5.678 9 C 0.068 3.932 10 C -0.048 4.048 11 C -0.117 4.117 12 C -0.130 4.130 13 C -0.004 4.004 14 C -0.506 4.506 15 H 0.078 0.922 16 C 0.064 3.936 17 N -0.906 5.906 18 Si 0.876 3.124 19 H -0.279 1.279 20 H -0.290 1.290 21 H -0.267 1.267 22 C -0.074 4.074 23 H 0.078 0.922 24 C -0.136 4.136 25 C 0.060 3.940 26 H 0.056 0.944 27 H 0.063 0.937 28 H 0.054 0.946 29 H 0.029 0.971 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.030 0.970 33 H 0.075 0.925 34 H 0.064 0.936 35 H 0.341 0.659 36 H 0.021 0.979 37 H 0.063 0.937 38 H 0.045 0.955 39 H 0.059 0.941 40 H 0.038 0.962 41 H 0.039 0.961 42 H 0.069 0.931 43 H 0.035 0.965 44 H 0.011 0.989 45 H 0.009 0.991 46 H 0.261 0.739 47 H 0.058 0.942 48 H 0.044 0.956 49 H 0.062 0.938 50 H 0.030 0.970 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.712 -22.189 -8.687 25.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.077 4.077 3 N -0.260 5.260 4 C -0.070 4.070 5 C -0.187 4.187 6 C -0.020 4.020 7 H 0.087 0.913 8 N -0.308 5.308 9 C -0.061 4.061 10 C -0.049 4.049 11 C -0.174 4.174 12 C -0.187 4.187 13 C -0.042 4.042 14 C -0.544 4.544 15 H 0.096 0.904 16 C -0.136 4.136 17 N -0.546 5.546 18 Si 0.703 3.297 19 H -0.205 1.205 20 H -0.216 1.216 21 H -0.192 1.192 22 C -0.094 4.094 23 H 0.096 0.904 24 C -0.194 4.194 25 C -0.068 4.068 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.073 0.927 29 H 0.048 0.952 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.048 0.952 33 H 0.094 0.906 34 H 0.083 0.917 35 H 0.161 0.839 36 H 0.040 0.960 37 H 0.081 0.919 38 H 0.064 0.936 39 H 0.078 0.922 40 H 0.057 0.943 41 H 0.058 0.942 42 H 0.088 0.912 43 H 0.054 0.946 44 H 0.030 0.970 45 H 0.028 0.972 46 H 0.071 0.929 47 H 0.077 0.923 48 H 0.063 0.937 49 H 0.081 0.919 50 H 0.048 0.952 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.219 -21.901 -9.082 25.094 hybrid contribution -0.505 -0.659 2.211 2.361 sum -8.724 -22.560 -6.871 25.145 Atomic orbital electron populations 1.21805 0.94959 1.01356 1.02543 1.22046 0.96081 0.89096 1.00518 1.61946 1.14220 1.15045 1.34750 1.22057 1.00621 0.94520 0.89794 1.22370 0.98264 0.95845 1.02252 1.21589 0.92935 0.90307 0.97126 0.91308 1.60635 1.49883 1.01221 1.19097 1.22149 0.98822 0.96072 0.89054 1.20406 0.95539 0.91167 0.97746 1.21607 0.96120 1.01568 0.98144 1.21773 0.97411 1.01789 0.97738 1.19627 0.95858 0.96753 0.91978 1.21146 1.45261 0.92955 0.94997 0.90413 1.25019 0.94986 0.94738 0.98880 1.69910 1.47987 1.06263 1.30441 0.86848 0.78755 0.78963 0.85090 1.20473 1.21601 1.19225 1.21123 1.00182 0.92554 0.95504 0.90406 1.21693 1.00973 1.00346 0.96345 1.22154 0.87052 0.97388 1.00240 0.92496 0.91810 0.92691 0.95236 0.90924 0.90739 0.95204 0.90637 0.91711 0.83888 0.96032 0.91857 0.93622 0.92227 0.94323 0.94223 0.91223 0.94574 0.97026 0.97247 0.92918 0.92348 0.93693 0.91905 0.95219 0.90811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.85 37.16 0.37 -0.68 16 2 C 0.05 0.40 5.68 -3.82 -0.02 0.38 16 3 N -0.53 -4.99 3.94 -234.67 -0.92 -5.91 16 4 C 0.06 0.57 5.29 -3.83 -0.02 0.55 16 5 C -0.15 -1.60 4.99 -26.65 -0.13 -1.73 16 6 C 0.09 1.07 2.23 -67.59 -0.15 0.92 16 7 H 0.07 0.87 7.80 -51.93 -0.41 0.47 16 8 N -0.68 -9.24 4.92 -106.60 -0.52 -9.77 16 9 C 0.07 1.10 4.45 -3.82 -0.02 1.09 16 10 C -0.05 -0.93 0.60 -154.51 -0.09 -1.02 16 11 C -0.12 -2.25 8.06 37.16 0.30 -1.95 16 12 C -0.13 -2.39 7.89 37.16 0.29 -2.09 16 13 C 0.00 -0.10 3.11 -27.89 -0.09 -0.19 16 14 C -0.51 -14.01 8.20 -34.44 -0.28 -14.30 16 15 H 0.08 2.30 5.92 -52.49 -0.31 1.99 16 16 C 0.06 1.86 5.47 -17.82 -0.10 1.76 16 17 N -0.91 -27.93 13.96 55.43 0.77 -27.15 16 18 Si 0.88 21.92 27.47 -169.99 -4.67 17.25 16 19 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 21 H -0.27 -6.46 6.54 56.52 0.37 -6.09 16 22 C -0.07 -0.78 2.95 -90.53 -0.27 -1.05 16 23 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 24 C -0.14 -1.42 8.43 37.16 0.31 -1.11 16 25 C 0.06 0.56 4.90 -3.84 -0.02 0.54 16 26 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.40 6.44 -51.93 -0.33 0.07 16 29 H 0.03 0.23 8.12 -51.93 -0.42 -0.19 16 30 H 0.07 0.53 7.98 -51.93 -0.41 0.11 16 31 H 0.07 0.68 6.22 -51.93 -0.32 0.36 16 32 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.08 0.84 6.54 -51.93 -0.34 0.50 16 34 H 0.06 0.75 7.52 -51.93 -0.39 0.36 16 35 H 0.34 4.59 5.72 -39.29 -0.22 4.37 16 36 H 0.02 0.35 7.49 -51.93 -0.39 -0.04 16 37 H 0.06 1.06 8.06 -51.93 -0.42 0.64 16 38 H 0.04 0.79 7.60 -51.93 -0.39 0.39 16 39 H 0.06 1.28 6.62 -51.93 -0.34 0.93 16 40 H 0.04 0.74 8.14 -51.92 -0.42 0.31 16 41 H 0.04 0.71 8.14 -51.92 -0.42 0.29 16 42 H 0.07 1.45 6.61 -51.93 -0.34 1.11 16 43 H 0.04 0.56 6.57 -51.93 -0.34 0.22 16 44 H 0.01 0.28 7.20 -51.93 -0.37 -0.10 16 45 H 0.01 0.22 7.57 -51.93 -0.39 -0.17 16 46 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 47 H 0.06 0.66 7.17 -51.93 -0.37 0.28 16 48 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 49 H 0.06 0.68 6.01 -51.93 -0.31 0.37 16 50 H 0.03 0.29 8.14 -51.93 -0.42 -0.14 16 51 H 0.07 0.64 8.01 -51.93 -0.42 0.22 16 LS Contribution 367.78 15.07 5.54 5.54 Total: -1.00 -28.90 367.78 -9.53 -38.43 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -9.81 Total: 0.50 kcal Atomic # 6 Polarization: -18.97 SS G_CDS: 0.08 Total: -18.88 kcal Atomic # 7 Polarization: -42.16 SS G_CDS: -0.67 Total: -42.83 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.67 Total: 17.25 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -28.90 -9.53 -38.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348235508.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.465 kcal (2) G-P(sol) polarization free energy of solvation -28.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds