Wall clock time and date at job start Tue Mar 31 2020 06:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46910 * 109.47153 * 2 1 4 4 C 1.46842 * 110.99703 * 66.04611 * 3 2 1 5 5 C 1.53039 * 109.52266 * 174.16402 * 4 3 2 6 6 C 1.53123 * 109.31189 * 59.15550 * 5 4 3 7 7 H 1.09000 * 109.52057 * 62.27355 * 6 5 4 8 8 N 1.46898 * 109.52408 * 182.46200 * 6 5 4 9 9 C 1.46891 * 111.00365 * 275.00182 * 8 6 5 10 10 C 1.52994 * 109.47766 * 179.97438 * 9 8 6 11 11 C 1.52998 * 109.47286 * 300.00340 * 10 9 8 12 12 C 1.53002 * 109.46832 * 59.99688 * 10 9 8 13 13 C 1.52997 * 109.47696 * 179.97438 * 10 9 8 14 14 C 1.50696 * 109.47289 * 180.02562 * 13 10 9 15 15 H 1.07997 * 120.00385 * 0.02562 * 14 13 10 16 16 C 1.37879 * 119.99908 * 180.02562 * 14 13 10 17 17 N 1.31521 * 119.99826 * 179.97438 * 16 14 13 18 18 Si 1.86796 * 120.00103 * 359.97438 * 16 14 13 19 19 H 1.48504 * 109.46989 * 90.00162 * 18 16 14 20 20 H 1.48494 * 109.47141 * 209.99729 * 18 16 14 21 21 H 1.48497 * 109.47110 * 330.00168 * 18 16 14 22 22 C 1.53129 * 109.15931 * 302.40768 * 6 5 4 23 23 H 1.08997 * 109.50406 * 177.55366 * 22 6 5 24 24 C 1.53001 * 109.49818 * 297.63780 * 22 6 5 25 25 C 1.46849 * 110.99768 * 301.83691 * 3 2 1 26 26 H 1.08995 * 109.47022 * 300.00315 * 1 2 3 27 27 H 1.09001 * 109.46710 * 59.99819 * 1 2 3 28 28 H 1.08996 * 109.47155 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47577 * 240.00208 * 2 1 3 30 30 H 1.09002 * 109.47116 * 119.99317 * 2 1 3 31 31 H 1.08995 * 109.46659 * 54.14295 * 4 3 2 32 32 H 1.09009 * 109.46400 * 294.17124 * 4 3 2 33 33 H 1.09002 * 109.50563 * 179.11883 * 5 4 3 34 34 H 1.09003 * 109.50107 * 299.19864 * 5 4 3 35 35 H 1.00899 * 110.99893 * 151.03936 * 8 6 5 36 36 H 1.09004 * 109.47309 * 300.00030 * 9 8 6 37 37 H 1.09004 * 109.47364 * 59.99280 * 9 8 6 38 38 H 1.09003 * 109.47029 * 59.99432 * 11 10 9 39 39 H 1.09004 * 109.47474 * 179.97438 * 11 10 9 40 40 H 1.09000 * 109.46930 * 299.99801 * 11 10 9 41 41 H 1.09003 * 109.47014 * 60.00242 * 12 10 9 42 42 H 1.08999 * 109.47335 * 179.97438 * 12 10 9 43 43 H 1.09003 * 109.47382 * 300.00506 * 12 10 9 44 44 H 1.09003 * 109.46985 * 300.00270 * 13 10 9 45 45 H 1.09000 * 109.46663 * 60.00111 * 13 10 9 46 46 H 0.96995 * 119.99627 * 180.02562 * 17 16 14 47 47 H 1.09003 * 109.46361 * 179.84288 * 24 22 6 48 48 H 1.08996 * 109.47140 * 299.83548 * 24 22 6 49 49 H 1.08998 * 109.47553 * 59.84483 * 24 22 6 50 50 H 1.09001 * 109.46071 * 305.85100 * 25 3 2 51 51 H 1.09002 * 109.46350 * 65.83217 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 1.6703 2.0667 1.2528 5 6 2.3184 3.4528 1.2789 6 6 1.8242 4.2655 0.0788 7 1 0.7455 4.4034 0.1517 8 7 2.4882 5.5758 0.0663 9 6 1.7796 6.5333 0.9258 10 6 2.4994 7.8828 0.8875 11 6 3.9339 7.7103 1.3909 12 6 2.5229 8.4077 -0.5495 13 6 1.7610 8.8804 1.7822 14 6 2.4696 10.2097 1.7440 15 1 3.3576 10.3312 1.1415 16 6 1.9843 11.2710 2.4783 17 7 2.6031 12.4311 2.4454 18 14 0.4480 11.0612 3.5199 19 1 0.8315 10.6148 4.8834 20 1 -0.2714 12.3573 3.6076 21 1 -0.4374 10.0447 2.8970 22 6 2.1567 3.5100 -1.2110 23 1 1.7689 4.0626 -2.0667 24 6 3.6743 3.3653 -1.3413 25 6 1.5133 2.1223 -1.1647 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5137 0.8901 31 1 2.0317 1.4809 2.0980 32 1 0.5873 2.1709 1.3199 33 1 2.0461 3.9646 2.2019 34 1 3.4022 3.3489 1.2264 35 1 2.5734 5.9289 -0.8750 36 1 0.7575 6.6560 0.5674 37 1 1.7631 6.1596 1.9496 38 1 4.4597 6.9997 0.7531 39 1 4.4468 8.6717 1.3632 40 1 3.9171 7.3363 2.4146 41 1 1.5010 8.5307 -0.9081 42 1 3.0353 9.3694 -0.5767 43 1 3.0488 7.6972 -1.1873 44 1 0.7391 9.0033 1.4232 45 1 1.7439 8.5066 2.8060 46 1 2.2619 13.1776 2.9622 47 1 3.9103 2.8251 -2.2582 48 1 4.1320 4.3540 -1.3742 49 1 4.0617 2.8138 -0.4847 50 1 1.7607 1.5768 -2.0754 51 1 0.4311 2.2263 -1.0863 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348235509.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:34 Heat of formation + Delta-G solvation = -18.336059 kcal Electronic energy + Delta-G solvation = -23811.950303 eV Core-core repulsion = 20745.154171 eV Total energy + Delta-G solvation = -3066.796132 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.96906 -37.63444 -35.60115 -32.83598 -31.92175 -31.48726 -29.09807 -27.59489 -26.60204 -26.34200 -25.50683 -23.87759 -22.82823 -21.85491 -21.13520 -18.65916 -17.71871 -16.76841 -16.33527 -15.67594 -15.17288 -14.99436 -14.80914 -14.25745 -14.13212 -13.97888 -13.62772 -13.26305 -12.99455 -12.84310 -12.56813 -12.42011 -12.29769 -12.12267 -11.93373 -11.80740 -11.58091 -11.30552 -11.15561 -10.98977 -10.93896 -10.87911 -10.77159 -10.48235 -10.42321 -10.27247 -10.20569 -9.74956 -9.65360 -9.23052 -8.86588 -8.47727 -8.44578 -8.07823 -5.98097 -3.93934 3.33340 3.40846 3.44350 3.72255 4.32989 4.49965 4.59193 4.67800 4.76374 4.88203 5.05934 5.10187 5.12774 5.19969 5.35088 5.39142 5.44502 5.52264 5.55363 5.58668 5.61609 5.62369 5.70821 5.79582 5.86981 5.89715 5.91724 5.96457 6.08729 6.20682 6.22425 6.30594 6.32789 6.47634 6.59400 6.64044 6.74240 6.83951 6.90422 6.92178 7.11730 7.18119 7.24210 7.36714 7.39152 7.50168 7.71127 7.88080 8.62307 9.08244 9.65253 11.15114 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.029343 B = 0.003458 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.995554 B = 8094.468608 C = 8589.836516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.050 3.950 3 N -0.531 5.531 4 C 0.054 3.946 5 C -0.105 4.105 6 C 0.091 3.909 7 H 0.033 0.967 8 N -0.677 5.677 9 C 0.068 3.932 10 C -0.048 4.048 11 C -0.116 4.116 12 C -0.130 4.130 13 C -0.004 4.004 14 C -0.506 4.506 15 H 0.078 0.922 16 C 0.064 3.936 17 N -0.906 5.906 18 Si 0.876 3.124 19 H -0.278 1.278 20 H -0.290 1.290 21 H -0.268 1.268 22 C -0.090 4.090 23 H 0.067 0.933 24 C -0.130 4.130 25 C 0.061 3.939 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.031 0.969 33 H 0.064 0.936 34 H 0.082 0.918 35 H 0.339 0.661 36 H 0.020 0.980 37 H 0.064 0.936 38 H 0.045 0.955 39 H 0.058 0.942 40 H 0.038 0.962 41 H 0.038 0.962 42 H 0.069 0.931 43 H 0.036 0.964 44 H 0.011 0.989 45 H 0.009 0.991 46 H 0.261 0.739 47 H 0.041 0.959 48 H 0.059 0.941 49 H 0.069 0.931 50 H 0.073 0.927 51 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.790 -24.193 -6.721 25.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.078 4.078 3 N -0.255 5.255 4 C -0.074 4.074 5 C -0.143 4.143 6 C -0.019 4.019 7 H 0.051 0.949 8 N -0.309 5.309 9 C -0.060 4.060 10 C -0.048 4.048 11 C -0.174 4.174 12 C -0.187 4.187 13 C -0.042 4.042 14 C -0.544 4.544 15 H 0.096 0.904 16 C -0.136 4.136 17 N -0.546 5.546 18 Si 0.703 3.297 19 H -0.204 1.204 20 H -0.216 1.216 21 H -0.192 1.192 22 C -0.109 4.109 23 H 0.085 0.915 24 C -0.188 4.188 25 C -0.067 4.067 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.049 0.951 33 H 0.083 0.917 34 H 0.100 0.900 35 H 0.159 0.841 36 H 0.038 0.962 37 H 0.083 0.917 38 H 0.064 0.936 39 H 0.077 0.923 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.088 0.912 43 H 0.054 0.946 44 H 0.029 0.971 45 H 0.028 0.972 46 H 0.071 0.929 47 H 0.060 0.940 48 H 0.078 0.922 49 H 0.088 0.912 50 H 0.091 0.909 51 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -1.826 -24.181 -6.204 25.031 hybrid contribution -2.759 0.274 0.221 2.781 sum -4.585 -23.907 -5.982 25.067 Atomic orbital electron populations 1.22449 0.98451 1.02196 1.02144 1.22150 0.92718 0.90252 1.02667 1.62139 1.59128 1.01732 1.02491 1.22134 0.97868 0.95619 0.91792 1.21607 1.02115 0.92840 0.97766 1.21521 0.95392 0.90131 0.94852 0.94900 1.60570 1.52803 1.02065 1.15448 1.22162 0.94306 0.92676 0.96894 1.20405 0.96202 0.92143 0.96096 1.21599 0.95549 1.00935 0.99279 1.21773 1.00332 1.01262 0.95352 1.19625 0.95509 0.94972 0.94098 1.21147 1.12334 0.93075 1.27805 0.90409 1.25020 0.96755 0.95283 0.96566 1.69913 1.40435 1.01940 1.42314 0.86848 0.84300 0.77321 0.81188 1.20445 1.21603 1.19243 1.21341 0.97976 0.94605 0.96992 0.91462 1.21648 0.93849 1.01836 1.01440 1.22099 0.96624 0.94428 0.93556 0.92519 0.92445 0.92239 0.90799 0.90786 0.90858 0.95060 0.91735 0.89987 0.84073 0.96222 0.91738 0.93584 0.92266 0.94312 0.94283 0.91218 0.94554 0.97070 0.97232 0.92921 0.94013 0.92184 0.91246 0.90866 0.94873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.38 9.21 37.16 0.34 -1.04 16 2 C 0.05 0.38 6.08 -3.82 -0.02 0.36 16 3 N -0.53 -4.95 4.14 -234.66 -0.97 -5.92 16 4 C 0.05 0.53 5.05 -3.84 -0.02 0.51 16 5 C -0.10 -1.20 5.23 -26.65 -0.14 -1.34 16 6 C 0.09 1.08 2.25 -67.58 -0.15 0.93 16 7 H 0.03 0.43 7.81 -51.93 -0.41 0.02 16 8 N -0.68 -9.26 4.76 -106.60 -0.51 -9.77 16 9 C 0.07 1.12 4.45 -3.83 -0.02 1.10 16 10 C -0.05 -0.93 0.60 -154.51 -0.09 -1.02 16 11 C -0.12 -2.24 8.06 37.16 0.30 -1.94 16 12 C -0.13 -2.39 7.89 37.16 0.29 -2.10 16 13 C 0.00 -0.10 3.11 -27.89 -0.09 -0.19 16 14 C -0.51 -14.03 8.20 -34.44 -0.28 -14.31 16 15 H 0.08 2.30 5.92 -52.49 -0.31 1.99 16 16 C 0.06 1.86 5.47 -17.82 -0.10 1.76 16 17 N -0.91 -27.95 13.96 55.43 0.77 -27.17 16 18 Si 0.88 21.94 27.47 -169.99 -4.67 17.27 16 19 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 21 H -0.27 -6.48 6.54 56.52 0.37 -6.11 16 22 C -0.09 -0.92 2.61 -90.53 -0.24 -1.16 16 23 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 24 C -0.13 -1.37 8.56 37.16 0.32 -1.05 16 25 C 0.06 0.57 4.27 -3.83 -0.02 0.55 16 26 H 0.06 0.44 6.68 -51.93 -0.35 0.10 16 27 H 0.06 0.43 6.51 -51.93 -0.34 0.09 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.53 8.06 -51.93 -0.42 0.11 16 31 H 0.07 0.67 8.06 -51.93 -0.42 0.25 16 32 H 0.03 0.31 6.76 -51.92 -0.35 -0.04 16 33 H 0.06 0.79 7.52 -51.93 -0.39 0.40 16 34 H 0.08 1.02 6.59 -51.93 -0.34 0.68 16 35 H 0.34 4.54 6.13 -39.29 -0.24 4.30 16 36 H 0.02 0.33 8.06 -51.93 -0.42 -0.09 16 37 H 0.06 1.08 7.49 -51.93 -0.39 0.69 16 38 H 0.05 0.80 7.60 -51.93 -0.39 0.40 16 39 H 0.06 1.27 6.62 -51.93 -0.34 0.93 16 40 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.07 1.45 6.61 -51.93 -0.34 1.11 16 43 H 0.04 0.57 6.57 -51.93 -0.34 0.22 16 44 H 0.01 0.27 7.20 -51.93 -0.37 -0.11 16 45 H 0.01 0.23 7.57 -51.93 -0.39 -0.17 16 46 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 47 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.06 0.68 7.35 -51.93 -0.38 0.30 16 49 H 0.07 0.80 6.01 -51.93 -0.31 0.48 16 50 H 0.07 0.62 8.12 -51.93 -0.42 0.20 16 51 H 0.03 0.31 6.61 -51.93 -0.34 -0.03 16 LS Contribution 365.16 15.07 5.50 5.50 Total: -1.00 -28.96 365.16 -9.51 -38.47 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -9.72 Total: 0.54 kcal Atomic # 6 Polarization: -19.01 SS G_CDS: 0.09 Total: -18.92 kcal Atomic # 7 Polarization: -42.15 SS G_CDS: -0.71 Total: -42.86 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.67 Total: 17.27 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -28.96 -9.51 -38.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348235509.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.131 kcal (2) G-P(sol) polarization free energy of solvation -28.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds