Wall clock time and date at job start Tue Mar 31 2020 06:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46895 * 109.47597 * 2 1 4 4 C 1.46843 * 110.99970 * 314.21160 * 3 2 1 5 5 C 1.53042 * 109.52278 * 174.15687 * 4 3 2 6 6 C 1.53127 * 109.27596 * 59.17923 * 5 4 3 7 7 H 1.09003 * 109.52393 * 62.24889 * 6 5 4 8 8 N 1.46899 * 109.52287 * 182.37865 * 6 5 4 9 9 C 1.46908 * 110.99534 * 275.00065 * 8 6 5 10 10 C 1.53003 * 109.46626 * 180.02562 * 9 8 6 11 11 C 1.53002 * 109.46942 * 299.99744 * 10 9 8 12 12 C 1.52997 * 109.47375 * 59.99900 * 10 9 8 13 13 C 1.53004 * 109.46951 * 179.97438 * 10 9 8 14 14 C 1.50703 * 109.47145 * 179.97438 * 13 10 9 15 15 H 1.08001 * 119.99908 * 359.97438 * 14 13 10 16 16 C 1.37867 * 119.99862 * 179.97438 * 14 13 10 17 17 N 1.31516 * 120.00294 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 119.99794 * 180.02562 * 16 14 13 19 19 H 1.48491 * 109.47128 * 90.00433 * 18 16 14 20 20 H 1.48500 * 109.46837 * 210.00246 * 18 16 14 21 21 H 1.48490 * 109.47322 * 329.99896 * 18 16 14 22 22 C 1.53123 * 109.15019 * 302.34079 * 6 5 4 23 23 H 1.08997 * 109.51083 * 297.71779 * 22 6 5 24 24 C 1.53000 * 109.49034 * 177.60705 * 22 6 5 25 25 C 1.46847 * 110.99982 * 189.99795 * 3 2 1 26 26 H 1.09001 * 109.46741 * 59.99127 * 1 2 3 27 27 H 1.08990 * 109.47702 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.46763 * 300.00403 * 1 2 3 29 29 H 1.08997 * 109.46731 * 239.99659 * 2 1 3 30 30 H 1.09001 * 109.46741 * 120.00873 * 2 1 3 31 31 H 1.08993 * 109.46313 * 294.17341 * 4 3 2 32 32 H 1.09000 * 109.46480 * 54.15451 * 4 3 2 33 33 H 1.08997 * 109.50758 * 179.11703 * 5 4 3 34 34 H 1.08999 * 109.50480 * 299.24136 * 5 4 3 35 35 H 1.00898 * 111.00072 * 151.05044 * 8 6 5 36 36 H 1.08999 * 109.47235 * 299.99895 * 9 8 6 37 37 H 1.08995 * 109.47365 * 60.00306 * 9 8 6 38 38 H 1.09000 * 109.47337 * 60.00600 * 11 10 9 39 39 H 1.09002 * 109.47059 * 180.02562 * 11 10 9 40 40 H 1.08995 * 109.47391 * 300.00098 * 11 10 9 41 41 H 1.08999 * 109.47102 * 59.99922 * 12 10 9 42 42 H 1.09002 * 109.47045 * 179.97438 * 12 10 9 43 43 H 1.09000 * 109.47250 * 299.99612 * 12 10 9 44 44 H 1.08999 * 109.47140 * 299.99842 * 13 10 9 45 45 H 1.09003 * 109.46855 * 59.99851 * 13 10 9 46 46 H 0.97000 * 119.99794 * 180.02562 * 17 16 14 47 47 H 1.09004 * 109.47174 * 300.19702 * 24 22 6 48 48 H 1.09000 * 109.47475 * 60.20312 * 24 22 6 49 49 H 1.08997 * 109.47033 * 180.20216 * 24 22 6 50 50 H 1.09002 * 109.46481 * 305.85957 * 25 3 2 51 51 H 1.08994 * 109.46283 * 65.83811 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 1.2940 2.1997 -0.9826 5 6 1.7267 3.6621 -0.8539 6 6 3.2357 3.7655 -1.0921 7 1 3.4677 3.4395 -2.1060 8 7 3.6665 5.1586 -0.9137 9 6 3.4825 5.9289 -2.1510 10 6 3.9417 7.3711 -1.9268 11 6 3.1133 8.0016 -0.8055 12 6 5.4207 7.3805 -1.5353 13 6 3.7507 8.1733 -3.2156 14 6 4.2023 9.5940 -2.9946 15 1 4.5867 9.8948 -2.0312 16 6 4.1248 10.5097 -4.0223 17 7 3.6563 10.1437 -5.1954 18 14 4.6853 12.2706 -3.7486 19 1 6.1270 12.3889 -4.0840 20 1 3.8984 13.1814 -4.6183 21 1 4.4760 12.6412 -2.3260 22 6 3.9655 2.8702 -0.0868 23 1 3.7644 3.2204 0.9256 24 6 5.4707 2.9215 -0.3563 25 6 3.4681 1.4309 -0.2380 26 1 -0.3633 0.5140 -0.8899 27 1 -0.3634 -1.0275 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5140 0.8899 31 1 1.5179 1.8419 -1.9875 32 1 0.2224 2.1208 -0.7994 33 1 1.1994 4.2641 -1.5938 34 1 1.4905 4.0248 0.1465 35 1 4.6240 5.2035 -0.5988 36 1 4.0730 5.4800 -2.9497 37 1 2.4289 5.9219 -2.4302 38 1 3.2498 7.4300 0.1125 39 1 3.4400 9.0291 -0.6461 40 1 2.0596 7.9949 -1.0844 41 1 6.0108 6.9314 -2.3341 42 1 5.7478 8.4080 -1.3760 43 1 5.5572 6.8089 -0.6173 44 1 4.3411 7.7241 -4.0141 45 1 2.6971 8.1667 -3.4949 46 1 3.6021 10.7879 -5.9185 47 1 5.6705 2.5727 -1.3696 48 1 5.8245 3.9468 -0.2485 49 1 5.9895 2.2812 0.3571 50 1 3.9756 0.7933 0.4859 51 1 3.6818 1.0768 -1.2464 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348235512.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:36 Heat of formation + Delta-G solvation = -22.531807 kcal Electronic energy + Delta-G solvation = -23613.032497 eV Core-core repulsion = 20546.054424 eV Total energy + Delta-G solvation = -3066.978073 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.73955 -37.50737 -35.57334 -32.97363 -32.13023 -31.45038 -29.50854 -26.99869 -26.34172 -26.25951 -25.30138 -23.79500 -22.82781 -21.61875 -20.71525 -19.72076 -17.80189 -16.40878 -16.19061 -15.48205 -15.36665 -15.10930 -14.71880 -14.33257 -13.96635 -13.77519 -13.55285 -13.15257 -12.97136 -12.88386 -12.43227 -12.38630 -12.26304 -11.96427 -11.83265 -11.73482 -11.60140 -11.39143 -11.11987 -10.97272 -10.87671 -10.78504 -10.69567 -10.56625 -10.44022 -10.24513 -10.10814 -10.02690 -9.63927 -8.97045 -8.78674 -8.46327 -8.29402 -7.99674 -5.93943 -3.93888 3.34730 3.41323 3.44491 3.69855 4.38791 4.52331 4.59718 4.73828 4.83192 4.89182 5.01490 5.17483 5.22314 5.25676 5.36546 5.41891 5.45781 5.48095 5.56515 5.59123 5.65545 5.72852 5.75483 5.81364 5.84402 5.89388 5.95244 6.01046 6.05659 6.09824 6.22650 6.31938 6.38691 6.46433 6.56991 6.71463 6.84174 6.87082 6.94199 6.95402 7.24888 7.29981 7.31166 7.49745 7.72653 7.78983 7.89621 8.06708 8.51379 9.11624 9.68829 11.17774 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.032910 B = 0.003183 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.605321 B = 8795.980829 C = 9211.480839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.051 3.949 3 N -0.538 5.538 4 C 0.050 3.950 5 C -0.104 4.104 6 C 0.091 3.909 7 H 0.035 0.965 8 N -0.682 5.682 9 C 0.071 3.929 10 C -0.058 4.058 11 C -0.115 4.115 12 C -0.128 4.128 13 C 0.034 3.966 14 C -0.505 4.505 15 H 0.059 0.941 16 C 0.054 3.946 17 N -0.898 5.898 18 Si 0.887 3.113 19 H -0.282 1.282 20 H -0.288 1.288 21 H -0.274 1.274 22 C -0.090 4.090 23 H 0.087 0.913 24 C -0.152 4.152 25 C 0.065 3.935 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.029 0.971 30 H 0.073 0.927 31 H 0.028 0.972 32 H 0.082 0.918 33 H 0.067 0.933 34 H 0.077 0.923 35 H 0.339 0.661 36 H 0.020 0.980 37 H 0.064 0.936 38 H 0.043 0.957 39 H 0.053 0.947 40 H 0.039 0.961 41 H 0.039 0.961 42 H 0.064 0.936 43 H 0.032 0.968 44 H 0.011 0.989 45 H 0.014 0.986 46 H 0.258 0.742 47 H 0.052 0.948 48 H 0.062 0.938 49 H 0.057 0.943 50 H 0.073 0.927 51 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.021 -19.959 10.283 22.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.077 4.077 3 N -0.263 5.263 4 C -0.078 4.078 5 C -0.142 4.142 6 C -0.019 4.019 7 H 0.053 0.947 8 N -0.315 5.315 9 C -0.057 4.057 10 C -0.058 4.058 11 C -0.172 4.172 12 C -0.186 4.186 13 C -0.004 4.004 14 C -0.544 4.544 15 H 0.077 0.923 16 C -0.146 4.146 17 N -0.538 5.538 18 Si 0.715 3.285 19 H -0.209 1.209 20 H -0.214 1.214 21 H -0.199 1.199 22 C -0.109 4.109 23 H 0.105 0.895 24 C -0.210 4.210 25 C -0.063 4.063 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.048 0.952 30 H 0.092 0.908 31 H 0.046 0.954 32 H 0.100 0.900 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.160 0.840 36 H 0.038 0.962 37 H 0.083 0.917 38 H 0.062 0.938 39 H 0.072 0.928 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.083 0.917 43 H 0.051 0.949 44 H 0.030 0.970 45 H 0.033 0.967 46 H 0.068 0.932 47 H 0.071 0.929 48 H 0.080 0.920 49 H 0.076 0.924 50 H 0.091 0.909 51 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -2.743 -19.489 10.841 22.469 hybrid contribution 1.183 0.292 -1.511 1.941 sum -1.560 -19.197 9.329 21.401 Atomic orbital electron populations 1.21947 0.95036 1.01746 1.02709 1.22061 0.95796 0.89334 1.00496 1.62004 1.03855 1.10166 1.50243 1.22256 0.98906 0.93902 0.92771 1.21581 0.95241 0.94147 1.03266 1.21544 0.95145 0.88729 0.96457 0.94732 1.60622 1.28353 1.09708 1.32863 1.22130 1.00373 0.94372 0.88865 1.20621 0.94266 0.92255 0.98697 1.21587 0.98701 0.99999 0.96948 1.21767 0.96522 1.01913 0.98386 1.19120 0.96842 0.94044 0.90349 1.21245 1.41175 0.94745 0.97219 0.92295 1.25016 0.95686 0.98568 0.95358 1.69969 1.46792 1.34666 1.02399 0.86668 0.78550 0.85174 0.78063 1.20856 1.21390 1.19901 1.21302 0.94344 0.94167 1.01056 0.89464 1.21864 0.95363 1.02213 1.01526 1.22087 0.87873 0.96991 0.99358 0.92231 0.92342 0.91652 0.95230 0.90846 0.95353 0.90024 0.91479 0.90390 0.83989 0.96173 0.91706 0.93845 0.92793 0.94229 0.94198 0.91739 0.94881 0.97022 0.96730 0.93202 0.92908 0.91950 0.92368 0.90865 0.95136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.17 9.16 37.16 0.34 -0.83 16 2 C 0.05 0.43 5.99 -3.83 -0.02 0.41 16 3 N -0.54 -5.52 4.80 -234.68 -1.13 -6.65 16 4 C 0.05 0.53 4.85 -3.83 -0.02 0.51 16 5 C -0.10 -1.29 5.58 -26.64 -0.15 -1.44 16 6 C 0.09 1.17 2.01 -67.58 -0.14 1.03 16 7 H 0.03 0.48 7.80 -51.93 -0.41 0.08 16 8 N -0.68 -10.02 5.52 -106.58 -0.59 -10.61 16 9 C 0.07 1.25 4.45 -3.82 -0.02 1.24 16 10 C -0.06 -1.17 0.60 -154.51 -0.09 -1.26 16 11 C -0.12 -2.26 8.06 37.16 0.30 -1.96 16 12 C -0.13 -2.41 7.89 37.16 0.29 -2.12 16 13 C 0.03 0.86 4.04 -27.88 -0.11 0.75 16 14 C -0.51 -13.94 7.65 -34.44 -0.26 -14.20 16 15 H 0.06 1.58 5.68 -52.49 -0.30 1.28 16 16 C 0.05 1.54 5.46 -17.82 -0.10 1.45 16 17 N -0.90 -27.07 13.29 55.43 0.74 -26.34 16 18 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 19 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 22 C -0.09 -0.97 2.52 -90.54 -0.23 -1.20 16 23 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 24 C -0.15 -1.49 8.99 37.16 0.33 -1.16 16 25 C 0.07 0.65 4.71 -3.84 -0.02 0.63 16 26 H 0.06 0.45 6.21 -51.93 -0.32 0.13 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 29 H 0.03 0.25 8.08 -51.93 -0.42 -0.17 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.08 0.80 5.81 -51.93 -0.30 0.50 16 33 H 0.07 0.89 7.52 -51.93 -0.39 0.50 16 34 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.34 4.80 4.37 -39.29 -0.17 4.63 16 36 H 0.02 0.36 8.06 -51.93 -0.42 -0.05 16 37 H 0.06 1.19 7.49 -51.93 -0.39 0.80 16 38 H 0.04 0.77 7.60 -51.93 -0.39 0.38 16 39 H 0.05 1.13 6.62 -51.93 -0.34 0.79 16 40 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.06 1.31 6.62 -51.93 -0.34 0.97 16 43 H 0.03 0.53 6.57 -51.93 -0.34 0.18 16 44 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 45 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 46 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 47 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 48 H 0.06 0.65 6.33 -51.93 -0.33 0.32 16 49 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 50 H 0.07 0.65 8.12 -51.93 -0.42 0.23 16 51 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 LS Contribution 373.48 15.07 5.63 5.63 Total: -1.00 -28.95 373.48 -10.18 -39.13 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -9.92 Total: 0.25 kcal Atomic # 6 Polarization: -18.26 SS G_CDS: 0.11 Total: -18.15 kcal Atomic # 7 Polarization: -42.61 SS G_CDS: -0.98 Total: -43.59 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -28.95 -10.18 -39.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348235512.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.599 kcal (2) G-P(sol) polarization free energy of solvation -28.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds