Wall clock time and date at job start Tue Mar 31 2020 06:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46897 * 109.47343 * 2 1 4 4 C 1.46898 * 110.99924 * 305.16429 * 3 2 1 5 5 C 1.52997 * 109.46751 * 293.95082 * 4 3 2 6 6 C 1.46906 * 110.99712 * 69.11403 * 3 2 1 7 7 C 1.53000 * 109.47307 * 75.76681 * 6 3 2 8 8 H 1.09001 * 109.46864 * 302.97389 * 7 6 3 9 9 C 1.53004 * 109.47082 * 62.96928 * 7 6 3 10 10 C 1.53000 * 109.46936 * 180.02562 * 9 7 6 11 11 C 1.52996 * 109.46866 * 300.00094 * 10 9 7 12 12 C 1.52991 * 109.47550 * 60.00010 * 11 10 9 13 13 C 1.52989 * 109.47267 * 182.97015 * 7 6 3 14 14 H 1.09001 * 109.47484 * 299.99994 * 13 7 6 15 15 N 1.46898 * 109.47350 * 59.99933 * 13 7 6 16 16 C 1.46901 * 111.00457 * 205.00110 * 15 13 7 17 17 C 1.52995 * 109.47142 * 179.97438 * 16 15 13 18 18 C 1.50705 * 109.46911 * 179.97438 * 17 16 15 19 19 H 1.07999 * 119.99855 * 359.97438 * 18 17 16 20 20 C 1.37879 * 119.99920 * 179.97438 * 18 17 16 21 21 N 1.31514 * 120.00145 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 119.99923 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47342 * 60.00212 * 22 20 18 24 24 H 1.48505 * 109.47285 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.47212 * 300.00052 * 22 20 18 26 26 H 1.09003 * 109.47225 * 182.28727 * 1 2 3 27 27 H 1.09002 * 109.47146 * 302.28278 * 1 2 3 28 28 H 1.08999 * 109.47565 * 62.28587 * 1 2 3 29 29 H 1.08998 * 109.47133 * 240.00208 * 2 1 3 30 30 H 1.09007 * 109.47156 * 119.99887 * 2 1 3 31 31 H 1.09002 * 109.47259 * 53.94964 * 4 3 2 32 32 H 1.08998 * 109.47096 * 173.95239 * 4 3 2 33 33 H 1.09001 * 109.46811 * 180.02562 * 5 4 3 34 34 H 1.09002 * 109.47143 * 299.99952 * 5 4 3 35 35 H 1.08997 * 109.47635 * 59.99927 * 5 4 3 36 36 H 1.08998 * 109.46919 * 195.76542 * 6 3 2 37 37 H 1.08996 * 109.47072 * 315.76706 * 6 3 2 38 38 H 1.09001 * 109.47152 * 300.00281 * 9 7 6 39 39 H 1.08991 * 109.46870 * 60.00297 * 9 7 6 40 40 H 1.09001 * 109.47236 * 60.00322 * 10 9 7 41 41 H 1.09000 * 109.46833 * 179.97438 * 10 9 7 42 42 H 1.09007 * 109.46858 * 180.02562 * 11 10 9 43 43 H 1.09001 * 109.47006 * 299.99749 * 11 10 9 44 44 H 1.09004 * 109.47040 * 60.00351 * 12 11 10 45 45 H 1.09001 * 109.47283 * 179.97438 * 12 11 10 46 46 H 1.00897 * 111.00098 * 328.95349 * 15 13 7 47 47 H 1.09009 * 109.46932 * 299.99647 * 16 15 13 48 48 H 1.08994 * 109.46845 * 59.99774 * 16 15 13 49 49 H 1.09000 * 109.47522 * 299.99661 * 17 16 15 50 50 H 1.09002 * 109.47496 * 59.99778 * 17 16 15 51 51 H 0.96997 * 119.99943 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.4505 2.1445 -1.1211 5 6 1.9728 1.5738 -2.4411 6 6 1.7342 2.0442 1.2814 7 6 2.7136 1.5406 2.3435 8 1 2.6405 0.4557 2.4197 9 6 4.1395 1.9292 1.9476 10 6 5.1189 1.4249 3.0094 11 6 4.7750 2.0550 4.3605 12 6 3.3492 1.6665 4.7564 13 6 2.3696 2.1711 3.6943 14 1 2.4426 3.2559 3.6181 15 7 1.0006 1.7980 4.0745 16 6 0.4196 2.7893 4.9898 17 6 -1.0032 2.3676 5.3619 18 6 -1.5989 3.3843 6.3014 19 1 -1.0203 4.2448 6.6032 20 6 -2.8826 3.2158 6.7756 21 7 -3.5870 2.1677 6.4084 22 14 -3.6213 4.4763 7.9395 23 1 -3.6558 5.8037 7.2746 24 1 -5.0023 4.0671 8.3008 25 1 -2.7927 4.5601 9.1691 26 1 -0.3634 -1.0269 0.0410 27 1 -0.3633 0.5489 0.8688 28 1 -0.3634 0.4779 -0.9097 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 0.3634 2.0682 -1.0971 32 1 1.7432 3.1911 -1.0367 33 1 1.5509 2.1377 -3.2730 34 1 3.0599 1.6502 -2.4651 35 1 1.6802 0.5272 -2.5256 36 1 1.8445 3.1226 1.1676 37 1 0.7143 1.8138 1.5892 38 1 4.3845 1.4800 0.9851 39 1 4.2125 3.0139 1.8713 40 1 5.0458 0.3400 3.0852 41 1 6.1348 1.7014 2.7271 42 1 5.4731 1.6961 5.1169 43 1 4.8482 3.1399 4.2846 44 1 3.2761 0.5815 4.8323 45 1 3.1045 2.1150 5.7192 46 1 0.4196 1.6750 3.2588 47 1 1.0282 2.8513 5.8921 48 1 0.3936 3.7633 4.5014 49 1 -1.6116 2.3060 4.4596 50 1 -0.9776 1.3934 5.8501 51 1 -4.4900 2.0490 6.7423 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348309303.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:07 Heat of formation + Delta-G solvation = -28.342590 kcal Electronic energy + Delta-G solvation = -23667.758426 eV Core-core repulsion = 20600.528378 eV Total energy + Delta-G solvation = -3067.230048 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.63353 -37.71427 -35.03839 -32.90542 -32.22876 -31.17966 -30.14974 -28.95791 -27.43451 -25.08425 -24.07935 -23.94658 -21.71656 -21.02128 -20.39570 -19.76888 -19.28370 -16.38323 -16.22834 -16.09157 -15.42105 -14.75401 -14.54124 -14.42668 -14.11264 -13.95129 -13.80441 -13.26428 -13.04837 -12.84352 -12.59229 -12.29108 -12.28415 -12.18354 -11.95678 -11.66196 -11.53598 -11.45241 -11.28351 -11.13882 -11.02326 -10.88293 -10.77531 -10.63535 -10.56916 -10.29937 -10.16059 -9.90178 -9.76123 -9.29546 -9.11817 -8.34027 -8.28579 -7.72699 -5.98590 -4.01059 3.33839 3.38101 3.40586 3.83731 4.43765 4.63019 4.77880 4.83966 4.93287 4.97807 5.08041 5.15272 5.23190 5.26316 5.35783 5.37244 5.38670 5.45154 5.53566 5.57072 5.59987 5.63156 5.70549 5.74510 5.79451 5.85318 5.92310 5.92681 5.97446 6.05806 6.19463 6.23379 6.25876 6.28981 6.32441 6.40934 6.41118 6.48264 6.53665 6.68120 7.02953 7.04331 7.05748 7.55760 7.75692 7.86392 8.01609 8.11578 8.45718 9.06067 9.62568 11.12802 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.014692 B = 0.004081 C = 0.003406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.289514 B = 6859.745440 C = 8219.637032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.047 3.953 3 N -0.531 5.531 4 C 0.043 3.957 5 C -0.146 4.146 6 C 0.049 3.951 7 C -0.078 4.078 8 H 0.076 0.924 9 C -0.100 4.100 10 C -0.119 4.119 11 C -0.119 4.119 12 C -0.104 4.104 13 C 0.092 3.908 14 H 0.036 0.964 15 N -0.690 5.690 16 C 0.067 3.933 17 C 0.026 3.974 18 C -0.521 4.521 19 H 0.053 0.947 20 C 0.058 3.942 21 N -0.894 5.894 22 Si 0.892 3.108 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.276 1.276 26 H 0.060 0.940 27 H 0.062 0.938 28 H 0.056 0.944 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.040 0.960 32 H 0.070 0.930 33 H 0.054 0.946 34 H 0.060 0.940 35 H 0.054 0.946 36 H 0.068 0.932 37 H 0.047 0.953 38 H 0.073 0.927 39 H 0.053 0.947 40 H 0.059 0.941 41 H 0.055 0.945 42 H 0.057 0.943 43 H 0.057 0.943 44 H 0.066 0.934 45 H 0.061 0.939 46 H 0.333 0.667 47 H 0.058 0.942 48 H 0.012 0.988 49 H 0.011 0.989 50 H 0.025 0.975 51 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.072 -2.673 -14.796 21.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.081 4.081 3 N -0.254 5.254 4 C -0.085 4.085 5 C -0.204 4.204 6 C -0.079 4.079 7 C -0.097 4.097 8 H 0.095 0.905 9 C -0.138 4.138 10 C -0.156 4.156 11 C -0.157 4.157 12 C -0.143 4.143 13 C -0.018 4.018 14 H 0.054 0.946 15 N -0.322 5.322 16 C -0.061 4.061 17 C -0.011 4.011 18 C -0.560 4.560 19 H 0.071 0.929 20 C -0.143 4.143 21 N -0.533 5.533 22 Si 0.720 3.280 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.202 1.202 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.095 0.905 31 H 0.058 0.942 32 H 0.088 0.912 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.065 0.935 38 H 0.091 0.909 39 H 0.072 0.928 40 H 0.078 0.922 41 H 0.074 0.926 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.084 0.916 45 H 0.080 0.920 46 H 0.153 0.847 47 H 0.076 0.924 48 H 0.031 0.969 49 H 0.029 0.971 50 H 0.043 0.957 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 15.595 -3.180 -14.335 21.420 hybrid contribution -1.693 1.481 0.223 2.261 sum 13.902 -1.698 -14.112 19.882 Atomic orbital electron populations 1.22429 0.98108 1.02593 1.02233 1.22193 0.93028 0.90307 1.02604 1.62264 1.58380 1.02235 1.02528 1.22155 0.97565 0.97726 0.91068 1.21761 1.01794 1.00897 0.95931 1.22301 0.98029 0.98420 0.89187 1.21246 0.94808 1.00971 0.92716 0.90534 1.21420 0.93465 1.00407 0.98554 1.21553 0.98478 1.00387 0.95229 1.21550 0.96952 1.00378 0.96848 1.21493 0.92804 1.01582 0.98386 1.21498 0.90248 0.96893 0.93188 0.94606 1.60655 1.01933 1.49592 1.20035 1.22172 0.98527 0.90947 0.94462 1.19052 0.88538 0.97245 0.96272 1.21150 0.98946 1.08091 1.27851 0.92859 1.24994 0.97180 0.95563 0.96562 1.69962 1.10574 1.28035 1.44724 0.86662 0.78208 0.81712 0.81426 1.20314 1.21267 1.20207 0.92048 0.91931 0.92510 0.90890 0.90473 0.94200 0.91198 0.92665 0.92066 0.92730 0.91377 0.93543 0.90867 0.92814 0.92208 0.92632 0.92378 0.92454 0.91562 0.92012 0.84711 0.92378 0.96942 0.97085 0.95708 0.92971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.08 9.18 37.16 0.34 -1.74 16 2 C 0.05 0.48 5.64 -3.83 -0.02 0.45 16 3 N -0.53 -5.64 4.01 -234.63 -0.94 -6.58 16 4 C 0.04 0.42 5.31 -3.83 -0.02 0.40 16 5 C -0.15 -1.20 9.83 37.16 0.37 -0.84 16 6 C 0.05 0.59 4.13 -3.82 -0.02 0.57 16 7 C -0.08 -0.96 1.90 -90.62 -0.17 -1.13 16 8 H 0.08 1.01 6.72 -51.93 -0.35 0.66 16 9 C -0.10 -1.10 5.07 -26.73 -0.14 -1.24 16 10 C -0.12 -1.24 5.92 -26.73 -0.16 -1.40 16 11 C -0.12 -1.36 5.92 -26.74 -0.16 -1.52 16 12 C -0.10 -1.46 5.43 -26.71 -0.14 -1.61 16 13 C 0.09 1.36 1.97 -67.70 -0.13 1.23 16 14 H 0.04 0.56 7.80 -51.93 -0.40 0.16 16 15 N -0.69 -12.39 6.31 -106.71 -0.67 -13.06 16 16 C 0.07 1.44 5.42 -3.83 -0.02 1.42 16 17 C 0.03 0.70 5.23 -27.88 -0.15 0.55 16 18 C -0.52 -15.00 9.11 -34.44 -0.31 -15.31 16 19 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 20 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 21 N -0.89 -27.17 13.29 55.43 0.74 -26.43 16 22 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.78 6.33 -51.93 -0.33 0.45 16 28 H 0.06 0.58 6.34 -51.93 -0.33 0.25 16 29 H 0.07 0.68 6.72 -51.93 -0.35 0.33 16 30 H 0.08 0.84 6.61 -51.92 -0.34 0.49 16 31 H 0.04 0.41 5.93 -51.93 -0.31 0.10 16 32 H 0.07 0.68 7.83 -51.93 -0.41 0.28 16 33 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.05 0.44 6.67 -51.93 -0.35 0.10 16 36 H 0.07 0.85 7.73 -51.93 -0.40 0.44 16 37 H 0.05 0.63 4.05 -51.93 -0.21 0.42 16 38 H 0.07 0.80 7.69 -51.93 -0.40 0.40 16 39 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 43 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.06 0.95 7.46 -51.93 -0.39 0.56 16 46 H 0.33 5.86 6.12 -39.29 -0.24 5.62 16 47 H 0.06 1.26 7.44 -51.92 -0.39 0.87 16 48 H 0.01 0.27 8.05 -51.93 -0.42 -0.15 16 49 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 50 H 0.02 0.71 8.14 -51.93 -0.42 0.28 16 51 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 375.09 15.07 5.65 5.65 Total: -1.00 -29.27 375.09 -10.88 -40.15 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -9.80 Total: 2.00 kcal Atomic # 6 Polarization: -17.74 SS G_CDS: -0.83 Total: -18.57 kcal Atomic # 7 Polarization: -45.20 SS G_CDS: -0.88 Total: -46.08 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -29.27 -10.88 -40.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348309303.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.804 kcal (2) G-P(sol) polarization free energy of solvation -29.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds