Wall clock time and date at job start Tue Mar 31 2020 06:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46897 * 109.47182 * 2 1 4 4 C 1.46902 * 111.00015 * 160.29134 * 3 2 1 5 5 C 1.53001 * 109.47231 * 287.98378 * 4 3 2 6 6 C 1.46900 * 110.99882 * 284.23829 * 3 2 1 7 7 C 1.53001 * 109.47032 * 169.99670 * 6 3 2 8 8 H 1.09001 * 109.46809 * 55.00808 * 7 6 3 9 9 C 1.52993 * 109.47637 * 295.00601 * 7 6 3 10 10 C 1.53003 * 109.47527 * 179.97438 * 9 7 6 11 11 C 1.53001 * 109.46668 * 59.99783 * 10 9 7 12 12 C 1.52995 * 109.47596 * 300.00090 * 11 10 9 13 13 C 1.52998 * 109.47196 * 175.00407 * 7 6 3 14 14 H 1.09007 * 109.47451 * 300.00505 * 13 7 6 15 15 N 1.46896 * 109.47130 * 60.00226 * 13 7 6 16 16 C 1.46902 * 111.00353 * 204.99887 * 15 13 7 17 17 C 1.52999 * 109.47601 * 180.02562 * 16 15 13 18 18 C 1.50694 * 109.47397 * 180.02562 * 17 16 15 19 19 H 1.07999 * 119.99935 * 0.02562 * 18 17 16 20 20 C 1.37878 * 120.00037 * 179.97438 * 18 17 16 21 21 N 1.31520 * 119.99771 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00010 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47078 * 90.00115 * 22 20 18 24 24 H 1.48503 * 109.47202 * 210.00213 * 22 20 18 25 25 H 1.48500 * 109.47151 * 330.00336 * 22 20 18 26 26 H 1.09001 * 109.47325 * 65.50578 * 1 2 3 27 27 H 1.08995 * 109.47200 * 185.50974 * 1 2 3 28 28 H 1.09005 * 109.46954 * 305.50802 * 1 2 3 29 29 H 1.09004 * 109.47341 * 239.99930 * 2 1 3 30 30 H 1.09003 * 109.47544 * 120.00125 * 2 1 3 31 31 H 1.09006 * 109.47433 * 47.98577 * 4 3 2 32 32 H 1.09002 * 109.47331 * 167.98288 * 4 3 2 33 33 H 1.09004 * 109.46699 * 299.25314 * 5 4 3 34 34 H 1.08999 * 109.46935 * 59.24535 * 5 4 3 35 35 H 1.08999 * 109.47463 * 179.25064 * 5 4 3 36 36 H 1.09005 * 109.46798 * 50.00834 * 6 3 2 37 37 H 1.08997 * 109.47865 * 290.00468 * 6 3 2 38 38 H 1.09005 * 109.46916 * 59.99616 * 9 7 6 39 39 H 1.09001 * 109.47191 * 299.99974 * 9 7 6 40 40 H 1.09001 * 109.47169 * 300.00361 * 10 9 7 41 41 H 1.08994 * 109.47538 * 180.02562 * 10 9 7 42 42 H 1.09003 * 109.47122 * 179.97438 * 11 10 9 43 43 H 1.09001 * 109.46854 * 60.00385 * 11 10 9 44 44 H 1.08998 * 109.47162 * 300.00575 * 12 11 10 45 45 H 1.08997 * 109.47187 * 179.97438 * 12 11 10 46 46 H 1.00901 * 111.00168 * 328.95350 * 15 13 7 47 47 H 1.09005 * 109.47099 * 300.00539 * 16 15 13 48 48 H 1.09003 * 109.47081 * 60.00045 * 16 15 13 49 49 H 1.09004 * 109.46750 * 300.00440 * 17 16 15 50 50 H 1.09003 * 109.46933 * 59.99872 * 17 16 15 51 51 H 0.97001 * 119.99886 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4124 1.4509 0.4625 5 6 3.4628 1.1860 1.9686 6 6 1.8771 1.9937 -1.3293 7 6 2.1588 3.4947 -1.2357 8 1 3.1400 3.6529 -0.7883 9 6 1.0892 4.1613 -0.3684 10 6 1.3713 5.6621 -0.2743 11 6 1.3458 6.2746 -1.6762 12 6 2.4154 5.6080 -2.5436 13 6 2.1329 4.1068 -2.6377 14 1 2.8950 3.6319 -3.2557 15 7 0.8106 3.8935 -3.2408 16 6 0.8927 3.9055 -4.7075 17 6 -0.5008 3.6814 -5.2982 18 6 -0.4164 3.6931 -6.8028 19 1 0.5359 3.8448 -7.2890 20 6 -1.5549 3.5092 -7.5585 21 7 -2.7145 3.3239 -6.9663 22 14 -1.4502 3.5230 -9.4235 23 1 -1.2005 2.1442 -9.9155 24 1 -2.7286 4.0259 -9.9874 25 1 -0.3381 4.4097 -9.8503 26 1 -0.3634 0.4261 -0.9352 27 1 -0.3633 -1.0229 0.0987 28 1 -0.3633 0.5969 0.8366 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 4.0045 0.6986 -0.0588 32 1 3.8180 2.4409 0.2540 33 1 2.8817 1.9461 2.4908 34 1 3.0449 0.2014 2.1784 35 1 4.4975 1.2217 2.3094 36 1 0.8619 1.8367 -1.6938 37 1 2.5856 1.5332 -2.0178 38 1 1.1076 3.7251 0.6304 39 1 0.1080 4.0030 -0.8159 40 1 2.3525 5.8201 0.1733 41 1 0.6095 6.1370 0.3439 42 1 1.5463 7.3439 -1.6092 43 1 0.3646 6.1167 -2.1239 44 1 3.3966 5.7659 -2.0958 45 1 2.3969 6.0441 -3.5423 46 1 0.3959 3.0356 -2.9089 47 1 1.2781 4.8687 -5.0419 48 1 1.5609 3.1113 -5.0405 49 1 -0.8866 2.7183 -4.9638 50 1 -1.1687 4.4758 -4.9652 51 1 -3.5155 3.1949 -7.4980 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348309304.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:09 Heat of formation + Delta-G solvation = -28.357013 kcal Electronic energy + Delta-G solvation = -23789.952282 eV Core-core repulsion = 20722.721609 eV Total energy + Delta-G solvation = -3067.230673 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.62971 -37.52351 -34.65622 -32.74306 -31.98307 -31.94074 -30.09909 -28.92382 -27.58221 -24.95809 -23.97192 -23.10480 -22.08372 -21.43639 -20.51919 -20.04224 -18.60667 -16.23248 -16.11658 -15.94145 -15.17505 -14.93739 -14.71061 -14.39537 -14.14181 -13.83941 -13.78296 -13.42725 -13.07299 -12.66310 -12.43708 -12.27224 -12.21051 -11.98238 -11.88710 -11.62981 -11.52695 -11.50194 -11.38783 -11.10104 -11.01731 -10.92051 -10.71129 -10.53917 -10.42547 -10.22422 -10.06529 -9.78205 -9.61876 -9.28573 -9.10413 -8.37048 -8.32955 -7.68228 -5.97715 -3.99947 3.32736 3.39036 3.42493 3.76540 4.45347 4.70851 4.79366 4.81235 4.99511 5.01987 5.08507 5.16162 5.27099 5.31943 5.38213 5.39597 5.46385 5.51018 5.56745 5.60918 5.61489 5.71053 5.81248 5.83699 5.85421 5.86374 5.91340 5.99911 6.06549 6.12352 6.14251 6.24361 6.30273 6.37641 6.46018 6.50945 6.56246 6.64549 6.65032 6.87947 7.03481 7.04554 7.05185 7.57526 7.77766 7.88067 8.03799 8.13507 8.47183 9.07494 9.63640 11.13639 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.017189 B = 0.003957 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.557272 B = 7074.889985 C = 8022.129773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.048 3.952 3 N -0.532 5.532 4 C 0.045 3.955 5 C -0.145 4.145 6 C 0.053 3.947 7 C -0.081 4.081 8 H 0.068 0.932 9 C -0.097 4.097 10 C -0.114 4.114 11 C -0.111 4.111 12 C -0.102 4.102 13 C 0.091 3.909 14 H 0.033 0.967 15 N -0.680 5.680 16 C 0.067 3.933 17 C 0.027 3.973 18 C -0.520 4.520 19 H 0.053 0.947 20 C 0.058 3.942 21 N -0.893 5.893 22 Si 0.891 3.109 23 H -0.281 1.281 24 H -0.286 1.286 25 H -0.274 1.274 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.063 0.937 29 H 0.032 0.968 30 H 0.071 0.929 31 H 0.029 0.971 32 H 0.077 0.923 33 H 0.062 0.938 34 H 0.052 0.948 35 H 0.054 0.946 36 H 0.082 0.918 37 H 0.029 0.971 38 H 0.063 0.937 39 H 0.070 0.930 40 H 0.048 0.952 41 H 0.054 0.946 42 H 0.046 0.954 43 H 0.081 0.919 44 H 0.050 0.950 45 H 0.060 0.940 46 H 0.334 0.666 47 H 0.057 0.943 48 H 0.011 0.989 49 H 0.011 0.989 50 H 0.025 0.975 51 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.499 -2.609 17.756 21.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.080 4.080 3 N -0.256 5.256 4 C -0.083 4.083 5 C -0.203 4.203 6 C -0.075 4.075 7 C -0.100 4.100 8 H 0.086 0.914 9 C -0.134 4.134 10 C -0.152 4.152 11 C -0.149 4.149 12 C -0.141 4.141 13 C -0.020 4.020 14 H 0.051 0.949 15 N -0.313 5.313 16 C -0.062 4.062 17 C -0.011 4.011 18 C -0.559 4.559 19 H 0.071 0.929 20 C -0.143 4.143 21 N -0.532 5.532 22 Si 0.719 3.281 23 H -0.208 1.208 24 H -0.212 1.212 25 H -0.199 1.199 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.050 0.950 30 H 0.090 0.910 31 H 0.047 0.953 32 H 0.095 0.905 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.100 0.900 37 H 0.047 0.953 38 H 0.082 0.918 39 H 0.089 0.911 40 H 0.067 0.933 41 H 0.073 0.927 42 H 0.064 0.936 43 H 0.100 0.900 44 H 0.069 0.931 45 H 0.079 0.921 46 H 0.153 0.847 47 H 0.075 0.925 48 H 0.029 0.971 49 H 0.030 0.970 50 H 0.043 0.957 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 10.843 -1.717 18.089 21.160 hybrid contribution 0.977 -1.407 -1.950 2.595 sum 11.820 -3.124 16.139 20.247 Atomic orbital electron populations 1.21768 0.94612 1.01306 1.02846 1.22120 0.96508 0.88916 1.00451 1.62053 1.19801 1.17675 1.26088 1.22144 0.88987 1.01284 0.95904 1.21775 1.01092 1.01952 0.95489 1.22280 1.01672 0.94717 0.88795 1.21323 0.99794 0.93052 0.95821 0.91350 1.21349 0.98887 0.93942 0.99253 1.21491 1.00299 0.96322 0.97051 1.21398 1.01084 0.97470 0.94921 1.21464 0.97599 0.94984 1.00010 1.21481 0.91387 0.95714 0.93436 0.94943 1.60640 1.20335 1.41985 1.08340 1.22179 1.00488 0.98866 0.84637 1.19045 0.90279 0.97154 0.94576 1.21185 0.93793 1.49245 0.91709 0.92879 1.24996 0.95461 0.95383 0.98498 1.69975 0.98570 1.49410 1.35277 0.86611 0.77420 0.78171 0.85888 1.20763 1.21199 1.19906 0.92376 0.92634 0.91802 0.94990 0.91049 0.95294 0.90468 0.91866 0.92890 0.92697 0.89999 0.95273 0.91801 0.91135 0.93327 0.92741 0.93556 0.90039 0.93081 0.92108 0.84673 0.92454 0.97082 0.97041 0.95663 0.93039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.94 37.16 0.37 -1.15 16 2 C 0.05 0.49 5.55 -3.83 -0.02 0.46 16 3 N -0.53 -5.72 3.85 -234.62 -0.90 -6.63 16 4 C 0.04 0.43 5.55 -3.82 -0.02 0.40 16 5 C -0.15 -1.18 9.99 37.16 0.37 -0.81 16 6 C 0.05 0.65 3.82 -3.82 -0.01 0.64 16 7 C -0.08 -0.99 1.91 -90.62 -0.17 -1.16 16 8 H 0.07 0.80 6.10 -51.93 -0.32 0.48 16 9 C -0.10 -1.20 4.93 -26.73 -0.13 -1.33 16 10 C -0.11 -1.37 5.92 -26.73 -0.16 -1.53 16 11 C -0.11 -1.51 5.77 -26.73 -0.15 -1.66 16 12 C -0.10 -1.42 5.54 -26.71 -0.15 -1.57 16 13 C 0.09 1.31 2.30 -67.69 -0.16 1.16 16 14 H 0.03 0.50 7.80 -51.93 -0.40 0.09 16 15 N -0.68 -11.82 4.83 -106.69 -0.52 -12.34 16 16 C 0.07 1.40 5.42 -3.82 -0.02 1.38 16 17 C 0.03 0.70 5.23 -27.89 -0.15 0.56 16 18 C -0.52 -14.89 9.11 -34.44 -0.31 -15.21 16 19 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 20 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 21 N -0.89 -27.07 13.29 55.43 0.74 -26.33 16 22 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 25 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 26 H 0.06 0.67 6.97 -51.93 -0.36 0.31 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.03 0.34 8.00 -51.93 -0.42 -0.07 16 30 H 0.07 0.65 6.24 -51.93 -0.32 0.32 16 31 H 0.03 0.28 8.05 -51.93 -0.42 -0.14 16 32 H 0.08 0.75 5.87 -51.93 -0.30 0.44 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.05 0.42 6.52 -51.93 -0.34 0.08 16 35 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.08 1.10 5.00 -51.93 -0.26 0.84 16 37 H 0.03 0.38 8.12 -51.93 -0.42 -0.04 16 38 H 0.06 0.78 7.75 -51.93 -0.40 0.38 16 39 H 0.07 1.01 7.48 -51.93 -0.39 0.62 16 40 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.08 1.31 7.60 -51.93 -0.39 0.91 16 44 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 45 H 0.06 0.93 7.46 -51.93 -0.39 0.54 16 46 H 0.33 5.74 6.09 -39.29 -0.24 5.51 16 47 H 0.06 1.23 7.44 -51.93 -0.39 0.84 16 48 H 0.01 0.23 8.06 -51.93 -0.42 -0.19 16 49 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 50 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 51 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 377.27 15.07 5.69 5.69 Total: -1.00 -29.01 377.27 -10.78 -39.79 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -9.95 Total: 1.22 kcal Atomic # 6 Polarization: -17.42 SS G_CDS: -0.81 Total: -18.23 kcal Atomic # 7 Polarization: -44.62 SS G_CDS: -0.68 Total: -45.30 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -29.01 -10.78 -39.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348309304.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.434 kcal (2) G-P(sol) polarization free energy of solvation -29.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds