Wall clock time and date at job start Tue Mar 31 2020 06:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46898 * 109.47144 * 2 1 4 4 C 1.46905 * 110.99707 * 71.19644 * 3 2 1 5 5 C 1.52999 * 109.47129 * 199.79282 * 4 3 2 6 6 C 1.46907 * 111.00109 * 195.14805 * 3 2 1 7 7 C 1.52992 * 109.46932 * 75.67160 * 6 3 2 8 8 H 1.08995 * 109.47135 * 305.39407 * 7 6 3 9 9 C 1.53004 * 109.47179 * 65.39572 * 7 6 3 10 10 C 1.53004 * 109.46934 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.47111 * 299.99551 * 10 9 7 12 12 C 1.53004 * 109.46855 * 60.00401 * 11 10 9 13 13 C 1.52998 * 109.47033 * 185.39226 * 7 6 3 14 14 H 1.09001 * 109.46912 * 60.00555 * 13 7 6 15 15 N 1.46891 * 109.47300 * 299.99968 * 13 7 6 16 16 C 1.46905 * 111.00387 * 154.99850 * 15 13 7 17 17 C 1.52993 * 109.47291 * 180.02562 * 16 15 13 18 18 C 1.50705 * 109.46942 * 180.02562 * 17 16 15 19 19 H 1.08004 * 120.00071 * 359.97438 * 18 17 16 20 20 C 1.37880 * 120.00050 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99954 * 359.97438 * 20 18 17 22 22 Si 1.86792 * 119.99966 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47163 * 89.99670 * 22 20 18 24 24 H 1.48500 * 109.47130 * 209.99692 * 22 20 18 25 25 H 1.48501 * 109.47464 * 329.99753 * 22 20 18 26 26 H 1.08995 * 109.47209 * 183.52084 * 1 2 3 27 27 H 1.09004 * 109.47049 * 303.51825 * 1 2 3 28 28 H 1.08995 * 109.47422 * 63.51898 * 1 2 3 29 29 H 1.09008 * 109.47097 * 240.00580 * 2 1 3 30 30 H 1.08999 * 109.47136 * 120.00190 * 2 1 3 31 31 H 1.08994 * 109.47254 * 319.79563 * 4 3 2 32 32 H 1.09003 * 109.47032 * 79.79224 * 4 3 2 33 33 H 1.09002 * 109.47398 * 302.47869 * 5 4 3 34 34 H 1.09000 * 109.46775 * 62.47822 * 5 4 3 35 35 H 1.08996 * 109.47190 * 182.47488 * 5 4 3 36 36 H 1.09003 * 109.46760 * 315.67023 * 6 3 2 37 37 H 1.08994 * 109.46864 * 195.67008 * 6 3 2 38 38 H 1.08999 * 109.46805 * 299.99696 * 9 7 6 39 39 H 1.08995 * 109.47222 * 59.99887 * 9 7 6 40 40 H 1.08995 * 109.47304 * 59.99882 * 10 9 7 41 41 H 1.09004 * 109.46548 * 179.97438 * 10 9 7 42 42 H 1.08995 * 109.46918 * 180.02562 * 11 10 9 43 43 H 1.08995 * 109.47307 * 300.00329 * 11 10 9 44 44 H 1.08999 * 109.46805 * 180.02562 * 12 11 10 45 45 H 1.08995 * 109.47222 * 59.99876 * 12 11 10 46 46 H 1.00904 * 111.00487 * 31.04655 * 15 13 7 47 47 H 1.09003 * 109.46897 * 300.00587 * 16 15 13 48 48 H 1.09005 * 109.46490 * 60.00036 * 16 15 13 49 49 H 1.08997 * 109.47113 * 299.99731 * 17 16 15 50 50 H 1.08997 * 109.47620 * 60.00128 * 17 16 15 51 51 H 0.96995 * 120.00119 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7784 2.0286 1.2983 5 6 1.8288 3.5486 1.1312 6 6 3.4433 1.4401 -0.3584 7 6 3.5985 1.2256 -1.8652 8 1 3.1081 0.2954 -2.1522 9 6 2.9554 2.3937 -2.6156 10 6 3.1101 2.1788 -4.1225 11 6 4.5965 2.1016 -4.4768 12 6 5.2395 0.9334 -3.7264 13 6 5.0850 1.1487 -2.2190 14 1 5.5431 0.3165 -1.6845 15 7 5.7458 2.4023 -1.8323 16 6 7.1791 2.1891 -1.5905 17 6 7.8314 3.5139 -1.1903 18 6 9.3018 3.2953 -0.9429 19 1 9.7283 2.3099 -1.0591 20 6 10.1024 4.3531 -0.5673 21 7 9.5830 5.5530 -0.4253 22 14 11.9249 4.0820 -0.2600 23 1 12.6758 4.2854 -1.5249 24 1 12.4038 5.0483 0.7609 25 1 12.1439 2.6968 0.2284 26 1 -0.3633 -1.0257 0.0631 27 1 -0.3633 0.5675 0.8568 28 1 -0.3634 0.4582 -0.9198 29 1 1.8934 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8900 31 1 0.7970 1.7365 1.6718 32 1 2.5449 1.7153 2.0072 33 1 2.7947 3.8367 0.7163 34 1 1.0341 3.8665 0.4563 35 1 1.6935 4.0255 2.1019 36 1 3.9833 0.6593 0.1773 37 1 3.8489 2.4145 -0.0864 38 1 1.8964 2.4484 -2.3635 39 1 3.4458 3.3239 -2.3286 40 1 2.6194 1.2487 -4.4092 41 1 2.6516 3.0108 -4.6570 42 1 4.7066 1.9489 -5.5503 43 1 5.0872 3.0317 -4.1901 44 1 6.2986 0.8787 -3.9785 45 1 4.7489 0.0033 -4.0131 46 1 5.3001 2.8121 -1.0251 47 1 7.3081 1.4637 -0.7872 48 1 7.6487 1.8124 -2.4992 49 1 7.7024 4.2396 -1.9933 50 1 7.3617 3.8903 -0.2816 51 1 10.1463 6.2972 -0.1614 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348309305.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:11 Heat of formation + Delta-G solvation = -29.341818 kcal Electronic energy + Delta-G solvation = -23787.770229 eV Core-core repulsion = 20720.496852 eV Total energy + Delta-G solvation = -3067.273377 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.58698 -37.53790 -34.65195 -32.74158 -32.01605 -31.89559 -30.09222 -28.93972 -27.57967 -24.94928 -23.96098 -23.09917 -22.06068 -21.39830 -20.49951 -20.09581 -18.61278 -16.23152 -16.07774 -15.94769 -15.19658 -14.93771 -14.71635 -14.39934 -14.11770 -13.81553 -13.78584 -13.40026 -13.07825 -12.63684 -12.42423 -12.29437 -12.21691 -11.97668 -11.86293 -11.63344 -11.52767 -11.46825 -11.39401 -11.10322 -11.01543 -10.89693 -10.71308 -10.56129 -10.44668 -10.22649 -10.07086 -9.78011 -9.60335 -9.28685 -9.10440 -8.36431 -8.33011 -7.68032 -5.97811 -4.00034 3.32963 3.39024 3.42128 3.75913 4.45371 4.73650 4.80167 4.81741 4.99069 5.02647 5.08497 5.17104 5.27686 5.31706 5.38132 5.39771 5.46403 5.52791 5.57721 5.61961 5.62565 5.71719 5.80317 5.84370 5.85378 5.86772 5.91472 6.00088 6.07317 6.13324 6.14438 6.24711 6.31485 6.37995 6.46475 6.51887 6.56908 6.65118 6.66353 6.88609 7.03689 7.04944 7.05378 7.57671 7.77752 7.88024 8.03823 8.13490 8.47084 9.07397 9.63561 11.13563 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.017094 B = 0.003945 C = 0.003509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.587677 B = 7095.237855 C = 7977.189852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.048 3.952 3 N -0.532 5.532 4 C 0.047 3.953 5 C -0.147 4.147 6 C 0.052 3.948 7 C -0.077 4.077 8 H 0.067 0.933 9 C -0.096 4.096 10 C -0.114 4.114 11 C -0.111 4.111 12 C -0.102 4.102 13 C 0.090 3.910 14 H 0.033 0.967 15 N -0.680 5.680 16 C 0.067 3.933 17 C 0.027 3.973 18 C -0.520 4.520 19 H 0.053 0.947 20 C 0.058 3.942 21 N -0.893 5.893 22 Si 0.891 3.109 23 H -0.280 1.280 24 H -0.287 1.287 25 H -0.275 1.275 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.074 0.926 30 H 0.029 0.971 31 H 0.071 0.929 32 H 0.032 0.968 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.055 0.945 36 H 0.031 0.969 37 H 0.080 0.920 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.048 0.952 41 H 0.053 0.947 42 H 0.046 0.954 43 H 0.081 0.919 44 H 0.060 0.940 45 H 0.051 0.949 46 H 0.333 0.667 47 H 0.011 0.989 48 H 0.057 0.943 49 H 0.025 0.975 50 H 0.011 0.989 51 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.803 -9.801 -1.040 21.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.080 4.080 3 N -0.257 5.257 4 C -0.080 4.080 5 C -0.205 4.205 6 C -0.076 4.076 7 C -0.096 4.096 8 H 0.085 0.915 9 C -0.134 4.134 10 C -0.152 4.152 11 C -0.149 4.149 12 C -0.140 4.140 13 C -0.021 4.021 14 H 0.050 0.950 15 N -0.313 5.313 16 C -0.062 4.062 17 C -0.011 4.011 18 C -0.559 4.559 19 H 0.071 0.929 20 C -0.143 4.143 21 N -0.532 5.532 22 Si 0.719 3.281 23 H -0.206 1.206 24 H -0.212 1.212 25 H -0.200 1.200 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.092 0.908 30 H 0.047 0.953 31 H 0.090 0.910 32 H 0.050 0.950 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.049 0.951 37 H 0.099 0.901 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.067 0.933 41 H 0.072 0.928 42 H 0.064 0.936 43 H 0.099 0.901 44 H 0.079 0.921 45 H 0.069 0.931 46 H 0.153 0.847 47 H 0.029 0.971 48 H 0.076 0.924 49 H 0.043 0.957 50 H 0.030 0.970 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -18.931 -9.154 -1.978 21.120 hybrid contribution 1.600 -1.084 1.725 2.590 sum -17.331 -10.238 -0.253 20.130 Atomic orbital electron populations 1.21782 0.95065 1.01045 1.02460 1.22107 0.95936 0.89341 1.00639 1.62019 1.17481 1.16424 1.29753 1.22127 1.00607 0.95596 0.89716 1.21771 1.02864 0.94465 1.01391 1.22290 0.87596 1.01491 0.96180 1.21252 0.95178 0.99597 0.93614 0.91484 1.21346 1.00249 0.98096 0.93712 1.21489 0.96671 1.00368 0.96623 1.21396 0.95270 1.00343 0.97855 1.21464 1.00572 0.97460 0.94547 1.21488 0.92733 0.91929 0.95914 0.94955 1.60639 1.04089 1.24446 1.42118 1.22179 0.85840 0.99982 0.98168 1.19044 0.94243 0.91175 0.96596 1.21188 0.93796 0.94742 1.46206 0.92877 1.24995 0.98531 0.95219 0.95594 1.69971 1.35587 0.99832 1.47851 0.86610 0.85596 0.77895 0.77981 1.20641 1.21250 1.19979 0.92703 0.92765 0.91929 0.90752 0.95256 0.91023 0.94967 0.92152 0.92052 0.92632 0.95053 0.90130 0.91779 0.91253 0.93309 0.92781 0.93572 0.90061 0.92137 0.93072 0.84726 0.97086 0.92447 0.95678 0.97037 0.93039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 10.02 37.16 0.37 -0.81 16 2 C 0.05 0.46 5.50 -3.82 -0.02 0.43 16 3 N -0.53 -5.71 3.80 -234.62 -0.89 -6.60 16 4 C 0.05 0.48 5.52 -3.82 -0.02 0.46 16 5 C -0.15 -1.51 10.05 37.16 0.37 -1.13 16 6 C 0.05 0.64 3.82 -3.82 -0.01 0.62 16 7 C -0.08 -0.95 2.01 -90.62 -0.18 -1.13 16 8 H 0.07 0.80 6.63 -51.93 -0.34 0.45 16 9 C -0.10 -1.20 4.93 -26.73 -0.13 -1.33 16 10 C -0.11 -1.38 5.92 -26.73 -0.16 -1.54 16 11 C -0.11 -1.51 5.77 -26.73 -0.15 -1.67 16 12 C -0.10 -1.43 5.54 -26.70 -0.15 -1.57 16 13 C 0.09 1.31 2.30 -67.69 -0.16 1.15 16 14 H 0.03 0.50 7.80 -51.93 -0.41 0.09 16 15 N -0.68 -11.82 4.83 -106.70 -0.52 -12.34 16 16 C 0.07 1.40 5.42 -3.82 -0.02 1.38 16 17 C 0.03 0.70 5.23 -27.88 -0.15 0.56 16 18 C -0.52 -14.89 9.11 -34.44 -0.31 -15.20 16 19 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 20 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 21 N -0.89 -27.06 13.29 55.43 0.74 -26.33 16 22 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 0.43 6.40 -51.93 -0.33 0.10 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.72 6.48 -51.92 -0.34 0.38 16 30 H 0.03 0.28 8.06 -51.93 -0.42 -0.14 16 31 H 0.07 0.65 6.15 -51.93 -0.32 0.33 16 32 H 0.03 0.35 8.00 -51.93 -0.42 -0.07 16 33 H 0.06 0.70 6.71 -51.93 -0.35 0.35 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.03 0.40 8.00 -51.93 -0.42 -0.01 16 37 H 0.08 1.08 4.77 -51.93 -0.25 0.83 16 38 H 0.06 0.79 7.76 -51.93 -0.40 0.38 16 39 H 0.07 0.99 7.48 -51.93 -0.39 0.60 16 40 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.08 1.31 7.60 -51.93 -0.39 0.91 16 44 H 0.06 0.92 7.46 -51.93 -0.39 0.54 16 45 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.33 5.73 6.10 -39.29 -0.24 5.49 16 47 H 0.01 0.23 8.06 -51.93 -0.42 -0.19 16 48 H 0.06 1.23 7.44 -51.93 -0.39 0.84 16 49 H 0.02 0.71 8.14 -51.93 -0.42 0.28 16 50 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 51 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 377.74 15.07 5.69 5.69 Total: -1.00 -29.00 377.74 -10.79 -39.79 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -9.97 Total: 1.16 kcal Atomic # 6 Polarization: -17.38 SS G_CDS: -0.82 Total: -18.20 kcal Atomic # 7 Polarization: -44.60 SS G_CDS: -0.67 Total: -45.27 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -29.00 -10.79 -39.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348309305.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.447 kcal (2) G-P(sol) polarization free energy of solvation -29.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds