Wall clock time and date at job start Tue Mar 31 2020 06:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46896 * 109.47244 * 2 1 4 4 C 1.46899 * 111.00060 * 160.28684 * 3 2 1 5 5 C 1.52996 * 109.47078 * 287.98776 * 4 3 2 6 6 C 1.46897 * 111.00148 * 284.24438 * 3 2 1 7 7 C 1.52997 * 109.47434 * 170.00044 * 6 3 2 8 8 H 1.09001 * 109.47039 * 54.99618 * 7 6 3 9 9 C 1.52998 * 109.47084 * 294.99916 * 7 6 3 10 10 C 1.53004 * 109.47349 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.46997 * 59.99881 * 10 9 7 12 12 C 1.53002 * 109.47153 * 299.99866 * 11 10 9 13 13 C 1.52997 * 109.46795 * 60.00148 * 12 11 10 14 14 H 1.09001 * 109.47039 * 60.00102 * 13 12 11 15 15 N 1.46898 * 109.47183 * 180.02562 * 13 12 11 16 16 C 1.46908 * 110.99963 * 275.00295 * 15 13 12 17 17 C 1.53001 * 109.46929 * 179.97438 * 16 15 13 18 18 C 1.50703 * 109.46777 * 180.02562 * 17 16 15 19 19 H 1.08000 * 120.00068 * 359.97438 * 18 17 16 20 20 C 1.37873 * 119.99939 * 180.02562 * 18 17 16 21 21 N 1.31515 * 120.00127 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 120.00183 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47084 * 89.99395 * 22 20 18 24 24 H 1.48502 * 109.46938 * 209.99949 * 22 20 18 25 25 H 1.48502 * 109.46556 * 329.99623 * 22 20 18 26 26 H 1.09003 * 109.47272 * 305.51001 * 1 2 3 27 27 H 1.09008 * 109.47160 * 65.50396 * 1 2 3 28 28 H 1.08999 * 109.47366 * 185.50458 * 1 2 3 29 29 H 1.09004 * 109.47259 * 240.00122 * 2 1 3 30 30 H 1.09000 * 109.47106 * 120.00427 * 2 1 3 31 31 H 1.08998 * 109.47145 * 47.98912 * 4 3 2 32 32 H 1.08999 * 109.47379 * 167.98554 * 4 3 2 33 33 H 1.08996 * 109.47590 * 59.24894 * 5 4 3 34 34 H 1.08999 * 109.47177 * 179.25173 * 5 4 3 35 35 H 1.09007 * 109.47109 * 299.24758 * 5 4 3 36 36 H 1.09001 * 109.47629 * 49.99850 * 6 3 2 37 37 H 1.09005 * 109.46983 * 289.99427 * 6 3 2 38 38 H 1.09004 * 109.47146 * 59.99720 * 9 7 6 39 39 H 1.09001 * 109.46939 * 299.99763 * 9 7 6 40 40 H 1.09001 * 109.46926 * 299.99795 * 10 9 7 41 41 H 1.09002 * 109.47071 * 179.97438 * 10 9 7 42 42 H 1.09005 * 109.46853 * 180.02562 * 11 10 9 43 43 H 1.08988 * 109.47104 * 60.00165 * 11 10 9 44 44 H 1.09001 * 109.47244 * 300.00375 * 12 11 10 45 45 H 1.08994 * 109.47222 * 180.02562 * 12 11 10 46 46 H 1.00907 * 111.00034 * 38.94870 * 15 13 12 47 47 H 1.08996 * 109.46887 * 299.99694 * 16 15 13 48 48 H 1.08999 * 109.46764 * 59.99588 * 16 15 13 49 49 H 1.08996 * 109.47370 * 299.99746 * 17 16 15 50 50 H 1.08993 * 109.47064 * 60.00212 * 17 16 15 51 51 H 0.96998 * 120.00509 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 3.4123 1.4509 0.4626 5 6 3.4626 1.1859 1.9686 6 6 1.8770 1.9938 -1.3292 7 6 2.1588 3.4947 -1.2357 8 1 3.1400 3.6529 -0.7881 9 6 1.0891 4.1613 -0.3683 10 6 1.3712 5.6622 -0.2742 11 6 1.3458 6.2747 -1.6760 12 6 2.4155 5.6081 -2.5434 13 6 2.1334 4.1074 -2.6374 14 1 1.1522 3.9495 -3.0852 15 7 3.1607 3.4672 -3.4697 16 6 2.8153 3.5575 -4.8947 17 6 3.9066 2.8820 -5.7277 18 6 3.5525 2.9752 -7.1896 19 1 2.6403 3.4666 -7.4940 20 6 4.3927 2.4321 -8.1383 21 7 5.5033 1.8332 -7.7676 22 14 3.9543 2.5482 -9.9505 23 1 4.5249 3.7959 -10.5188 24 1 4.5122 1.3756 -10.6708 25 1 2.4771 2.5655 -10.1021 26 1 -0.3634 0.5969 0.8365 27 1 -0.3634 0.4261 -0.9352 28 1 -0.3634 -1.0229 0.0986 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 4.0043 0.6987 -0.0587 32 1 3.8180 2.4409 0.2541 33 1 3.0448 0.2013 2.1785 34 1 4.4973 1.2217 2.3095 35 1 2.8815 1.9460 2.4909 36 1 0.8619 1.8368 -1.6938 37 1 2.5857 1.5334 -2.0177 38 1 1.1076 3.7252 0.6305 39 1 0.1079 4.0030 -0.8159 40 1 2.3524 5.8200 0.1736 41 1 0.6089 6.1371 0.3434 42 1 1.5472 7.3439 -1.6090 43 1 0.3647 6.1168 -2.1237 44 1 3.3967 5.7660 -2.0956 45 1 2.3977 6.0448 -3.5418 46 1 4.0703 3.8663 -3.2922 47 1 1.8625 3.0580 -5.0699 48 1 2.7348 4.6055 -5.1833 49 1 4.8592 3.3817 -5.5524 50 1 3.9875 1.8341 -5.4392 51 1 6.0947 1.4515 -8.4350 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348309307.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:13 Heat of formation + Delta-G solvation = -33.658073 kcal Electronic energy + Delta-G solvation = -23581.764302 eV Core-core repulsion = 20514.303758 eV Total energy + Delta-G solvation = -3067.460544 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.45248 -37.43547 -35.01881 -32.85622 -31.97312 -31.82293 -30.19290 -28.83600 -27.42540 -24.82507 -23.91254 -23.00042 -22.05688 -21.10762 -20.67843 -20.08768 -19.33573 -16.35198 -15.85211 -15.62031 -15.16102 -14.73099 -14.62487 -14.41729 -14.13970 -13.93694 -13.74025 -13.56894 -12.98598 -12.79446 -12.57799 -12.26207 -12.23895 -11.96006 -11.88861 -11.59847 -11.50639 -11.41947 -11.26612 -11.11807 -10.95652 -10.89639 -10.68908 -10.62756 -10.54806 -10.27196 -10.07650 -10.05841 -9.86430 -9.29945 -9.11533 -8.34908 -8.17698 -7.67675 -5.99342 -4.01771 3.31893 3.38124 3.41537 3.97123 4.43544 4.67223 4.76739 4.91621 4.97931 5.09995 5.17655 5.22266 5.30429 5.32747 5.36623 5.38039 5.47352 5.55123 5.60966 5.63837 5.65392 5.68249 5.72645 5.86375 5.88282 5.91338 5.95696 6.02165 6.11913 6.14321 6.18247 6.19366 6.21969 6.25593 6.34405 6.36768 6.43579 6.49094 6.56929 6.62550 7.00797 7.22820 7.25480 7.54179 7.75482 7.85247 8.00054 8.10355 8.44984 9.05681 9.62058 11.12066 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.015220 B = 0.003908 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.261450 B = 7163.860961 C = 8182.761750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.047 3.953 3 N -0.538 5.538 4 C 0.046 3.954 5 C -0.145 4.145 6 C 0.063 3.937 7 C -0.066 4.066 8 H 0.067 0.933 9 C -0.104 4.104 10 C -0.119 4.119 11 C -0.115 4.115 12 C -0.147 4.147 13 C 0.091 3.909 14 H 0.071 0.929 15 N -0.686 5.686 16 C 0.068 3.932 17 C 0.026 3.974 18 C -0.521 4.521 19 H 0.053 0.947 20 C 0.058 3.942 21 N -0.894 5.894 22 Si 0.891 3.109 23 H -0.281 1.281 24 H -0.286 1.286 25 H -0.274 1.274 26 H 0.060 0.940 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.034 0.966 30 H 0.069 0.931 31 H 0.032 0.968 32 H 0.077 0.923 33 H 0.051 0.949 34 H 0.053 0.947 35 H 0.059 0.941 36 H 0.066 0.934 37 H 0.057 0.943 38 H 0.072 0.928 39 H 0.055 0.945 40 H 0.057 0.943 41 H 0.055 0.945 42 H 0.055 0.945 43 H 0.059 0.941 44 H 0.060 0.940 45 H 0.061 0.939 46 H 0.334 0.666 47 H 0.055 0.945 48 H 0.014 0.986 49 H 0.012 0.988 50 H 0.023 0.977 51 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.968 2.498 19.446 21.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.081 4.081 3 N -0.263 5.263 4 C -0.082 4.082 5 C -0.203 4.203 6 C -0.064 4.064 7 C -0.085 4.085 8 H 0.085 0.915 9 C -0.142 4.142 10 C -0.157 4.157 11 C -0.153 4.153 12 C -0.186 4.186 13 C -0.020 4.020 14 H 0.090 0.910 15 N -0.314 5.314 16 C -0.061 4.061 17 C -0.011 4.011 18 C -0.560 4.560 19 H 0.072 0.928 20 C -0.143 4.143 21 N -0.533 5.533 22 Si 0.719 3.281 23 H -0.207 1.207 24 H -0.212 1.212 25 H -0.199 1.199 26 H 0.079 0.921 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.053 0.947 30 H 0.087 0.913 31 H 0.051 0.949 32 H 0.095 0.905 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.076 0.924 38 H 0.090 0.910 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.078 0.922 44 H 0.079 0.921 45 H 0.080 0.920 46 H 0.152 0.848 47 H 0.074 0.926 48 H 0.033 0.967 49 H 0.031 0.969 50 H 0.042 0.958 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.365 2.008 19.753 21.545 hybrid contribution 0.557 0.559 -1.910 2.067 sum -7.808 2.567 17.843 19.645 Atomic orbital electron populations 1.21743 0.95211 1.00980 1.02265 1.22080 0.95977 0.89461 1.00574 1.62103 1.19871 1.17282 1.27046 1.22103 0.89110 1.01609 0.95383 1.21780 1.00981 1.01646 0.95864 1.22101 1.01568 0.94251 0.88503 1.21101 0.98980 0.93955 0.94510 0.91459 1.21479 0.98295 0.93887 1.00559 1.21561 1.01182 0.96427 0.96508 1.21477 0.99175 0.98941 0.95705 1.22256 0.99014 0.97416 0.99920 1.21574 0.96514 0.90451 0.93462 0.91046 1.60709 1.04388 1.59370 1.06981 1.22147 1.00760 0.97870 0.85279 1.19053 0.92640 0.96327 0.93116 1.21185 1.06671 1.36512 0.91599 0.92828 1.24994 0.95060 0.95274 0.98982 1.69970 1.11867 1.37778 1.33686 0.86607 0.78640 0.77540 0.85290 1.20710 1.21195 1.19883 0.92129 0.92787 0.92845 0.94724 0.91262 0.94923 0.90459 0.93045 0.92761 0.92213 0.91513 0.92432 0.90970 0.92667 0.92404 0.92604 0.92651 0.92220 0.92143 0.92021 0.84828 0.92602 0.96737 0.96940 0.95834 0.93028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.94 37.16 0.37 -1.06 16 2 C 0.05 0.52 5.55 -3.83 -0.02 0.49 16 3 N -0.54 -6.26 3.84 -234.64 -0.90 -7.16 16 4 C 0.05 0.51 5.55 -3.83 -0.02 0.49 16 5 C -0.15 -1.34 9.99 37.16 0.37 -0.97 16 6 C 0.06 0.83 4.09 -3.83 -0.02 0.82 16 7 C -0.07 -0.82 1.85 -90.62 -0.17 -0.99 16 8 H 0.07 0.87 6.10 -51.93 -0.32 0.55 16 9 C -0.10 -1.14 5.09 -26.73 -0.14 -1.28 16 10 C -0.12 -1.22 5.92 -26.73 -0.16 -1.37 16 11 C -0.11 -1.26 5.92 -26.73 -0.16 -1.42 16 12 C -0.15 -1.90 5.17 -26.73 -0.14 -2.03 16 13 C 0.09 1.29 1.91 -67.72 -0.13 1.16 16 14 H 0.07 1.09 7.80 -51.93 -0.41 0.68 16 15 N -0.69 -11.83 5.40 -106.72 -0.58 -12.40 16 16 C 0.07 1.41 5.42 -3.82 -0.02 1.39 16 17 C 0.03 0.68 5.23 -27.88 -0.15 0.53 16 18 C -0.52 -14.88 9.11 -34.44 -0.31 -15.19 16 19 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 20 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 21 N -0.89 -27.10 13.29 55.43 0.74 -26.36 16 22 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.05 0.57 6.97 -51.92 -0.36 0.21 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.03 0.42 8.00 -51.93 -0.42 0.01 16 30 H 0.07 0.69 6.24 -51.93 -0.32 0.37 16 31 H 0.03 0.40 8.05 -51.93 -0.42 -0.02 16 32 H 0.08 0.89 5.87 -51.93 -0.30 0.59 16 33 H 0.05 0.46 6.52 -51.93 -0.34 0.12 16 34 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.56 8.14 -51.92 -0.42 0.13 16 36 H 0.07 0.91 6.72 -51.93 -0.35 0.56 16 37 H 0.06 0.92 7.43 -51.93 -0.39 0.54 16 38 H 0.07 0.81 7.75 -51.93 -0.40 0.40 16 39 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.66 8.14 -51.94 -0.42 0.24 16 44 H 0.06 0.77 8.13 -51.93 -0.42 0.35 16 45 H 0.06 0.88 7.45 -51.93 -0.39 0.49 16 46 H 0.33 5.72 8.47 -39.29 -0.33 5.39 16 47 H 0.06 1.19 8.06 -51.93 -0.42 0.77 16 48 H 0.01 0.30 7.44 -51.93 -0.39 -0.09 16 49 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 50 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 51 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 382.21 15.07 5.76 5.76 Total: -1.00 -28.87 382.21 -10.95 -39.82 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -10.16 Total: 1.40 kcal Atomic # 6 Polarization: -17.06 SS G_CDS: -0.78 Total: -17.84 kcal Atomic # 7 Polarization: -45.18 SS G_CDS: -0.74 Total: -45.92 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -28.87 -10.95 -39.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348309307.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.157 kcal (2) G-P(sol) polarization free energy of solvation -28.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds