Wall clock time and date at job start Tue Mar 31 2020 05:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46897 * 109.47067 * 2 1 4 4 C 1.46893 * 111.00042 * 287.16048 * 3 2 1 5 5 C 1.50707 * 109.47290 * 169.24816 * 4 3 2 6 6 H 1.07999 * 119.99633 * 4.76813 * 5 4 3 7 7 C 1.37874 * 119.99805 * 184.76550 * 5 4 3 8 8 N 1.31512 * 120.00456 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99588 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47389 * 90.00067 * 9 7 5 11 11 H 1.48501 * 109.46908 * 209.99663 * 9 7 5 12 12 H 1.48496 * 109.47175 * 329.99634 * 9 7 5 13 13 C 1.46896 * 111.00390 * 163.20262 * 3 2 1 14 14 C 1.50708 * 109.47114 * 293.95662 * 13 3 2 15 15 O 1.21280 * 119.99772 * 11.03391 * 14 13 3 16 16 N 1.34778 * 119.99992 * 191.03390 * 14 13 3 17 17 C 1.46924 * 120.62807 * 338.21603 * 16 14 13 18 18 H 1.09004 * 109.58770 * 113.84352 * 17 16 14 19 19 C 1.52995 * 109.59041 * 353.41824 * 17 16 14 20 20 C 1.52765 * 109.00698 * 233.58084 * 17 16 14 21 21 C 1.53033 * 109.38257 * 305.58940 * 20 17 16 22 22 C 1.53048 * 109.53769 * 61.24290 * 21 20 17 23 23 C 1.46918 * 120.63152 * 158.49737 * 16 14 13 24 24 H 1.08998 * 109.58594 * 246.15990 * 23 16 14 25 25 C 1.53006 * 109.58946 * 6.43638 * 23 16 14 26 26 H 1.09006 * 109.47287 * 185.29185 * 1 2 3 27 27 H 1.08999 * 109.47727 * 305.29534 * 1 2 3 28 28 H 1.08998 * 109.47434 * 65.29562 * 1 2 3 29 29 H 1.08994 * 109.47320 * 240.00043 * 2 1 3 30 30 H 1.09004 * 109.46971 * 119.99811 * 2 1 3 31 31 H 1.09007 * 109.47019 * 289.24433 * 4 3 2 32 32 H 1.08999 * 109.47361 * 49.24769 * 4 3 2 33 33 H 0.96998 * 120.00677 * 179.97438 * 8 7 5 34 34 H 1.08994 * 109.47689 * 173.95302 * 13 3 2 35 35 H 1.08999 * 109.46903 * 53.94925 * 13 3 2 36 36 H 1.08996 * 109.47343 * 68.42713 * 19 17 16 37 37 H 1.09007 * 109.47193 * 188.42645 * 19 17 16 38 38 H 1.08997 * 109.46946 * 308.42470 * 19 17 16 39 39 H 1.09007 * 109.56113 * 185.55369 * 20 17 16 40 40 H 1.09003 * 109.38525 * 65.52197 * 20 17 16 41 41 H 1.08998 * 109.46797 * 301.21718 * 21 20 17 42 42 H 1.09005 * 109.45935 * 181.25774 * 21 20 17 43 43 H 1.08998 * 109.49400 * 178.67911 * 22 21 20 44 44 H 1.09003 * 109.49486 * 58.58181 * 22 21 20 45 45 H 1.09002 * 109.46562 * 62.62900 * 25 23 16 46 46 H 1.08993 * 109.47679 * 182.63040 * 25 23 16 47 47 H 1.09004 * 109.46938 * 302.63481 * 25 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.8136 2.0162 -1.3103 5 6 2.0779 3.4959 -1.2023 6 1 2.4438 3.9128 -0.2756 7 6 1.8526 4.3174 -2.2864 8 7 1.4076 3.8097 -3.4150 9 14 2.1809 6.1515 -2.1526 10 1 3.5850 6.4330 -2.5458 11 1 1.2576 6.8866 -3.0540 12 1 1.9611 6.5928 -0.7519 13 6 3.4329 1.4438 0.3963 14 6 3.5695 1.0152 1.8347 15 8 2.6300 0.5047 2.4071 16 7 4.7357 1.1991 2.4848 17 6 5.9919 1.3556 1.7390 18 1 6.3799 2.3639 1.8841 19 6 5.7386 1.1099 0.2503 20 6 7.0084 0.3402 2.2579 21 6 7.1533 0.4957 3.7734 22 6 5.8067 0.2212 4.4471 23 6 4.7759 1.2408 3.9528 24 1 5.0626 2.2395 4.2823 25 6 3.3957 0.8924 4.5139 26 1 -0.3634 -1.0233 0.0948 27 1 -0.3634 0.5937 0.8387 28 1 -0.3634 0.4295 -0.9336 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.4976 1.5770 -2.0367 32 1 0.7857 1.8534 -1.6345 33 1 1.2487 4.3876 -4.1776 34 1 3.7994 2.4642 0.2849 35 1 4.0162 0.7768 -0.2385 36 1 5.1254 1.9164 -0.1520 37 1 6.6905 1.0782 -0.2799 38 1 5.2194 0.1601 0.1220 39 1 7.9731 0.5130 1.7806 40 1 6.6634 -0.6676 2.0268 41 1 7.4751 1.5110 4.0053 42 1 7.8948 -0.2131 4.1420 43 1 5.9162 0.3092 5.5280 44 1 5.4726 -0.7853 4.1954 45 1 3.1332 -0.1258 4.2264 46 1 3.4153 0.9693 5.6009 47 1 2.6554 1.5852 4.1138 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348539561.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:31 Heat of formation + Delta-G solvation = 15.313426 kcal Electronic energy + Delta-G solvation = -24359.897300 eV Core-core repulsion = 21158.727225 eV Total energy + Delta-G solvation = -3201.170075 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.67801 -37.63650 -36.29187 -34.29190 -32.75419 -32.52011 -30.29042 -28.87561 -28.12328 -26.35239 -25.24861 -23.06272 -22.27192 -21.53948 -21.05550 -19.76022 -18.86834 -16.64754 -16.25196 -15.93264 -15.34372 -14.82898 -14.62951 -14.31717 -14.17447 -14.01658 -13.86904 -13.36709 -13.20047 -12.73112 -12.66988 -12.23521 -12.22851 -11.85491 -11.78413 -11.58488 -11.32555 -11.16411 -11.09376 -11.00674 -10.94618 -10.74747 -10.68514 -10.63946 -10.40147 -10.25057 -10.10125 -9.69895 -9.14583 -8.59623 -8.43015 -8.20752 -7.03684 -6.02268 -4.03787 3.02585 3.17465 3.30334 3.37647 3.42232 4.42734 4.59471 4.64790 4.71628 4.90066 5.01150 5.12048 5.20889 5.24786 5.34301 5.37516 5.46832 5.54873 5.68094 5.74591 5.74798 5.84917 5.85389 5.94491 5.95906 5.97095 6.06600 6.13181 6.17356 6.22046 6.30725 6.34400 6.36145 6.54593 6.59599 6.81157 6.93450 6.99758 7.32497 7.37115 7.71913 7.82000 8.14339 8.28168 8.58354 8.69294 9.03675 9.60539 11.08321 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017193 B = 0.005412 C = 0.004744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.176402 B = 5172.528460 C = 5900.563885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.047 3.953 3 N -0.528 5.528 4 C 0.193 3.807 5 C -0.508 4.508 6 H 0.060 0.940 7 C 0.057 3.943 8 N -0.897 5.897 9 Si 0.894 3.106 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.273 1.273 13 C 0.019 3.981 14 C 0.524 3.476 15 O -0.514 6.514 16 N -0.624 5.624 17 C 0.146 3.854 18 H 0.073 0.927 19 C -0.197 4.197 20 C -0.129 4.129 21 C -0.119 4.119 22 C -0.130 4.130 23 C 0.147 3.853 24 H 0.066 0.934 25 C -0.140 4.140 26 H 0.041 0.959 27 H 0.059 0.941 28 H 0.052 0.948 29 H 0.011 0.989 30 H 0.079 0.921 31 H -0.014 1.014 32 H 0.040 0.960 33 H 0.261 0.739 34 H 0.113 0.887 35 H 0.079 0.921 36 H 0.102 0.898 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.065 0.935 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.069 0.931 44 H 0.066 0.934 45 H 0.075 0.925 46 H 0.040 0.960 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.790 -7.284 12.030 18.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.082 4.082 3 N -0.253 5.253 4 C 0.068 3.932 5 C -0.547 4.547 6 H 0.079 0.921 7 C -0.144 4.144 8 N -0.536 5.536 9 Si 0.722 3.278 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.198 1.198 13 C -0.111 4.111 14 C 0.314 3.686 15 O -0.389 6.389 16 N -0.362 5.362 17 C 0.042 3.958 18 H 0.090 0.910 19 C -0.253 4.253 20 C -0.168 4.168 21 C -0.157 4.157 22 C -0.169 4.169 23 C 0.044 3.956 24 H 0.084 0.916 25 C -0.197 4.197 26 H 0.060 0.940 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.029 0.971 30 H 0.098 0.902 31 H 0.004 0.996 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.130 0.870 35 H 0.096 0.904 36 H 0.120 0.880 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.084 0.916 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.087 0.913 44 H 0.084 0.916 45 H 0.094 0.906 46 H 0.059 0.941 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 10.911 -7.243 12.481 18.091 hybrid contribution 0.757 0.689 -0.666 1.221 sum 11.668 -6.554 11.816 17.853 Atomic orbital electron populations 1.21647 0.95825 0.99654 1.02266 1.22159 0.96081 0.90428 0.99482 1.61822 1.14880 1.15553 1.33074 1.19776 0.97115 0.93774 0.82510 1.21164 1.43714 0.92151 0.97643 0.92148 1.24962 0.95364 0.98735 0.95330 1.69951 1.45816 1.35480 1.02386 0.86560 0.77932 0.85280 0.78031 1.20754 1.21237 1.19823 1.23500 0.92684 1.03307 0.91623 1.21076 0.81138 0.76838 0.89555 1.90604 1.39843 1.40431 1.68020 1.48258 1.06979 1.75216 1.05750 1.20992 0.84180 0.98809 0.91796 0.90953 1.23392 1.03363 1.04123 0.94456 1.21910 0.98958 0.99925 0.95976 1.21515 0.97117 1.01767 0.95270 1.22006 0.95053 0.99967 0.99866 1.21146 0.96699 0.98054 0.79695 0.91642 1.22190 0.94921 1.04593 0.97983 0.93984 0.92237 0.92906 0.97051 0.90242 0.99630 0.94192 0.92931 0.86975 0.90389 0.87994 0.91506 0.91264 0.90860 0.91593 0.91866 0.91950 0.91263 0.91572 0.90638 0.94129 0.91177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 9.89 37.16 0.37 -2.25 16 2 C 0.05 0.94 5.24 -3.83 -0.02 0.92 16 3 N -0.53 -11.84 4.26 -237.52 -1.01 -12.85 16 4 C 0.19 5.02 4.57 -4.98 -0.02 4.99 16 5 C -0.51 -14.06 8.48 -34.44 -0.29 -14.35 16 6 H 0.06 1.66 7.05 -52.49 -0.37 1.29 16 7 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 8 N -0.90 -26.36 13.29 55.43 0.74 -25.62 16 9 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 13 C 0.02 0.36 2.91 -4.97 -0.01 0.34 16 14 C 0.52 9.25 6.63 -10.98 -0.07 9.18 16 15 O -0.51 -10.16 9.87 5.56 0.05 -10.10 16 16 N -0.62 -8.85 2.98 -157.99 -0.47 -9.32 16 17 C 0.15 1.70 3.44 -67.82 -0.23 1.46 16 18 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 19 C -0.20 -2.41 7.06 37.16 0.26 -2.15 16 20 C -0.13 -1.22 5.34 -26.83 -0.14 -1.37 16 21 C -0.12 -1.04 5.89 -26.69 -0.16 -1.20 16 22 C -0.13 -1.31 5.38 -26.61 -0.14 -1.46 16 23 C 0.15 1.85 3.49 -67.60 -0.24 1.61 16 24 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 25 C -0.14 -1.96 7.64 37.16 0.28 -1.68 16 26 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.05 1.07 6.82 -51.93 -0.35 0.72 16 29 H 0.01 0.23 8.04 -51.93 -0.42 -0.19 16 30 H 0.08 1.59 5.44 -51.93 -0.28 1.31 16 31 H -0.01 -0.38 8.11 -51.92 -0.42 -0.80 16 32 H 0.04 1.13 6.53 -51.93 -0.34 0.79 16 33 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 34 H 0.11 2.24 5.20 -51.93 -0.27 1.97 16 35 H 0.08 1.37 4.31 -51.93 -0.22 1.15 16 36 H 0.10 1.48 4.51 -51.93 -0.23 1.24 16 37 H 0.07 0.68 8.13 -51.93 -0.42 0.25 16 38 H 0.07 0.90 6.07 -51.93 -0.32 0.59 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 44 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 45 H 0.07 1.18 6.78 -51.93 -0.35 0.83 16 46 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.07 1.18 6.79 -51.93 -0.35 0.83 16 LS Contribution 344.32 15.07 5.19 5.19 Total: -1.00 -30.52 344.32 -9.18 -39.70 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -8.14 Total: 1.05 kcal Atomic # 6 Polarization: -3.90 SS G_CDS: -0.52 Total: -4.41 kcal Atomic # 7 Polarization: -47.05 SS G_CDS: -0.75 Total: -47.80 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.05 Total: -10.10 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.52 -9.18 -39.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348539561.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.015 kcal (2) G-P(sol) polarization free energy of solvation -30.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds