Wall clock time and date at job start Tue Mar 31 2020 05:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46906 * 109.46743 * 2 1 4 4 C 1.46899 * 111.00076 * 296.55233 * 3 2 1 5 5 C 1.50700 * 109.47048 * 293.25111 * 4 3 2 6 6 H 1.07994 * 119.99916 * 4.05832 * 5 4 3 7 7 C 1.37881 * 120.00046 * 184.05544 * 5 4 3 8 8 N 1.31517 * 119.99454 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00115 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47169 * 90.00226 * 9 7 5 11 11 H 1.48505 * 109.47164 * 210.00418 * 9 7 5 12 12 H 1.48496 * 109.47159 * 329.99861 * 9 7 5 13 13 C 1.46899 * 110.99890 * 60.50650 * 3 2 1 14 14 C 1.50704 * 109.46997 * 66.04778 * 13 3 2 15 15 O 1.21277 * 119.99865 * 4.04670 * 14 13 3 16 16 N 1.34780 * 119.99729 * 183.77651 * 14 13 3 17 17 C 1.46927 * 120.62948 * 175.30050 * 16 14 13 18 18 H 1.08997 * 109.58322 * 246.20288 * 17 16 14 19 19 C 1.53002 * 109.58374 * 6.62458 * 17 16 14 20 20 C 1.53624 * 108.54310 * 126.36630 * 17 16 14 21 21 C 1.53039 * 109.23886 * 54.85801 * 20 17 16 22 22 C 1.53035 * 109.53896 * 298.50837 * 21 20 17 23 23 C 1.46921 * 120.63100 * 355.58070 * 16 14 13 24 24 H 1.08999 * 109.58821 * 353.36985 * 23 16 14 25 25 C 1.53001 * 109.58785 * 113.80001 * 23 16 14 26 26 H 1.09008 * 109.46894 * 180.55874 * 1 2 3 27 27 H 1.08999 * 109.47335 * 300.55758 * 1 2 3 28 28 H 1.08995 * 109.47569 * 60.56096 * 1 2 3 29 29 H 1.08996 * 109.46922 * 240.00564 * 2 1 3 30 30 H 1.09000 * 109.47141 * 120.00096 * 2 1 3 31 31 H 1.09000 * 109.46824 * 53.25063 * 4 3 2 32 32 H 1.08997 * 109.46921 * 173.25069 * 4 3 2 33 33 H 0.97003 * 119.99642 * 179.97438 * 8 7 5 34 34 H 1.09001 * 109.47335 * 306.04577 * 13 3 2 35 35 H 1.09003 * 109.46804 * 186.04244 * 13 3 2 36 36 H 1.08995 * 109.47013 * 55.70968 * 19 17 16 37 37 H 1.09006 * 109.46492 * 175.70357 * 19 17 16 38 38 H 1.09000 * 109.47568 * 295.70635 * 19 17 16 39 39 H 1.09001 * 109.63506 * 294.86379 * 20 17 16 40 40 H 1.09001 * 109.42995 * 174.72228 * 20 17 16 41 41 H 1.08999 * 109.45923 * 178.49116 * 21 20 17 42 42 H 1.09000 * 109.46202 * 58.53171 * 21 20 17 43 43 H 1.09000 * 109.49765 * 301.41809 * 22 21 20 44 44 H 1.09001 * 109.50296 * 181.31875 * 22 21 20 45 45 H 1.08995 * 109.47351 * 59.99891 * 25 23 16 46 46 H 1.09002 * 109.46765 * 180.02562 * 25 23 16 47 47 H 1.08993 * 109.46995 * 299.99409 * 25 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.6170 2.0857 -1.2268 5 6 2.3211 1.4724 -2.4096 6 1 2.9485 0.6040 -2.2738 7 6 2.1643 2.0200 -3.6653 8 7 1.4006 3.0779 -3.8305 9 14 3.0365 1.2594 -5.1315 10 1 2.1640 0.2260 -5.7450 11 1 3.3333 2.3148 -6.1332 12 1 4.3055 0.6326 -4.6822 13 6 1.5584 2.1064 1.1937 14 6 2.1909 1.5026 2.4211 15 8 3.0068 0.6125 2.3073 16 7 1.8540 1.9555 3.6450 17 6 2.3830 1.3098 4.8540 18 1 1.5681 0.8371 5.4022 19 6 3.4196 0.2554 4.4605 20 6 3.0448 2.3832 5.7314 21 6 2.0369 3.5015 6.0065 22 6 1.6192 4.1504 4.6849 23 6 0.9457 3.1005 3.7955 24 1 0.7356 3.5315 2.8166 25 6 -0.3594 2.6380 4.4464 26 1 -0.3633 -1.0277 0.0100 27 1 -0.3634 0.5225 0.8849 28 1 -0.3634 0.5051 -0.8949 29 1 1.8933 -0.5137 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 0.5388 1.9961 -1.3592 32 1 1.8873 3.1388 -1.1490 33 1 1.2905 3.4634 -4.7138 34 1 0.4737 2.0292 1.2685 35 1 1.8436 3.1557 1.1169 36 1 4.1969 0.7191 3.8531 37 1 3.8660 -0.1686 5.3600 38 1 2.9345 -0.5352 3.8881 39 1 3.9125 2.7942 5.2155 40 1 3.3595 1.9369 6.6748 41 1 2.4943 4.2521 6.6510 42 1 1.1587 3.0855 6.5003 43 1 2.5004 4.5448 4.1788 44 1 0.9193 4.9621 4.8834 45 1 -0.1457 2.2136 5.4273 46 1 -1.0318 3.4887 4.5567 47 1 -0.8306 1.8820 3.8183 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348539563.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:35 Heat of formation + Delta-G solvation = -22.054899 kcal Electronic energy + Delta-G solvation = -24085.310312 eV Core-core repulsion = 20882.519824 eV Total energy + Delta-G solvation = -3202.790487 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.56765 -37.93361 -36.39934 -33.60040 -32.76290 -32.50457 -29.84673 -29.09136 -27.81542 -26.57911 -25.18293 -23.54098 -23.05707 -22.06407 -20.78216 -19.54813 -18.00902 -16.65387 -16.12168 -15.98599 -15.52757 -15.06931 -14.79557 -14.61629 -14.16589 -13.88187 -13.69906 -13.55864 -13.02216 -12.84236 -12.79652 -12.53558 -12.15412 -11.96413 -11.84973 -11.72764 -11.68289 -11.42110 -11.14282 -11.06278 -10.95650 -10.86431 -10.71455 -10.66667 -10.53891 -10.51928 -9.92536 -9.79236 -9.22129 -8.54732 -8.39882 -8.38054 -7.10036 -5.99325 -3.98971 3.04105 3.07371 3.35420 3.41361 3.47473 4.44958 4.50250 4.62048 4.68210 4.83982 4.95204 5.04678 5.14245 5.20513 5.28866 5.34502 5.37649 5.48263 5.53475 5.70125 5.72018 5.75698 5.76784 5.79642 5.83897 5.88543 5.91974 5.96339 6.01035 6.08185 6.16343 6.20583 6.34539 6.46116 6.58439 6.71474 6.86057 7.02178 7.31335 7.41613 7.62302 7.86122 8.11699 8.26590 8.55817 8.67686 9.08621 9.64625 11.11737 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025975 B = 0.004182 C = 0.004038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.692460 B = 6694.216390 C = 6933.106181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.056 3.944 3 N -0.515 5.515 4 C 0.190 3.810 5 C -0.501 4.501 6 H 0.064 0.936 7 C 0.055 3.945 8 N -0.901 5.901 9 Si 0.897 3.103 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.273 1.273 13 C 0.033 3.967 14 C 0.518 3.482 15 O -0.510 6.510 16 N -0.614 5.614 17 C 0.146 3.854 18 H 0.064 0.936 19 C -0.135 4.135 20 C -0.131 4.131 21 C -0.120 4.120 22 C -0.130 4.130 23 C 0.133 3.867 24 H 0.095 0.905 25 C -0.164 4.164 26 H 0.047 0.953 27 H 0.039 0.961 28 H 0.066 0.934 29 H 0.080 0.920 30 H 0.068 0.932 31 H -0.004 1.004 32 H 0.030 0.970 33 H 0.260 0.740 34 H 0.053 0.947 35 H 0.092 0.908 36 H 0.074 0.926 37 H 0.035 0.965 38 H 0.071 0.929 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.062 0.938 42 H 0.064 0.936 43 H 0.069 0.931 44 H 0.073 0.927 45 H 0.060 0.940 46 H 0.066 0.934 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.061 0.852 20.459 20.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.072 4.072 3 N -0.239 5.239 4 C 0.065 3.935 5 C -0.539 4.539 6 H 0.082 0.918 7 C -0.146 4.146 8 N -0.541 5.541 9 Si 0.725 3.275 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.197 1.197 13 C -0.099 4.099 14 C 0.307 3.693 15 O -0.384 6.384 16 N -0.351 5.351 17 C 0.043 3.957 18 H 0.082 0.918 19 C -0.192 4.192 20 C -0.170 4.170 21 C -0.157 4.157 22 C -0.168 4.168 23 C 0.029 3.971 24 H 0.113 0.887 25 C -0.222 4.222 26 H 0.066 0.934 27 H 0.058 0.942 28 H 0.085 0.915 29 H 0.098 0.902 30 H 0.087 0.913 31 H 0.014 0.986 32 H 0.048 0.952 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.110 0.890 36 H 0.093 0.907 37 H 0.054 0.946 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.081 0.919 42 H 0.083 0.917 43 H 0.087 0.913 44 H 0.092 0.908 45 H 0.079 0.921 46 H 0.085 0.915 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.135 0.470 20.229 20.346 hybrid contribution -0.652 -0.065 -0.831 1.058 sum -2.787 0.405 19.398 19.601 Atomic orbital electron populations 1.22415 1.00011 1.00899 1.01448 1.22096 0.91242 0.91237 1.02607 1.62096 1.58862 1.01819 1.01140 1.19809 0.94430 0.94138 0.85073 1.21149 1.28155 1.13446 0.91191 0.91820 1.24960 0.95604 0.95082 0.98951 1.69956 1.38997 1.22149 1.23009 0.86509 0.80110 0.78742 0.82156 1.20798 1.21322 1.19735 1.22053 0.97656 0.99357 0.90840 1.20917 0.81834 0.82720 0.83818 1.90695 1.32084 1.30017 1.85603 1.48312 1.48306 1.32905 1.05556 1.21264 0.95969 0.93018 0.85495 0.91804 1.22206 0.99131 0.98511 0.99336 1.22087 0.98771 0.96446 0.99670 1.21538 0.99207 0.97891 0.97082 1.21926 1.01133 0.97545 0.96209 1.21266 0.89214 0.86331 1.00305 0.88747 1.22172 0.96698 1.01945 1.01358 0.93382 0.94162 0.91528 0.90179 0.91330 0.98621 0.95228 0.93028 0.92920 0.89009 0.90737 0.94602 0.90991 0.91396 0.91253 0.91918 0.91698 0.91269 0.90803 0.92102 0.91497 0.92230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.49 9.26 37.16 0.34 -3.14 16 2 C 0.06 1.18 5.54 -3.82 -0.02 1.16 16 3 N -0.52 -11.56 4.41 -237.51 -1.05 -12.61 16 4 C 0.19 4.93 4.54 -4.98 -0.02 4.91 16 5 C -0.50 -14.25 8.56 -34.44 -0.29 -14.54 16 6 H 0.06 1.83 7.02 -52.49 -0.37 1.46 16 7 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -26.71 13.29 55.43 0.74 -25.97 16 9 Si 0.90 22.00 29.54 -169.99 -5.02 16.97 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 13 C 0.03 0.59 3.57 -4.97 -0.02 0.57 16 14 C 0.52 8.81 7.25 -10.98 -0.08 8.73 16 15 O -0.51 -10.07 9.92 5.56 0.06 -10.01 16 16 N -0.61 -8.06 2.68 -157.48 -0.42 -8.48 16 17 C 0.15 1.70 3.09 -67.37 -0.21 1.49 16 18 H 0.06 0.69 7.48 -51.93 -0.39 0.30 16 19 C -0.13 -1.82 7.60 37.16 0.28 -1.54 16 20 C -0.13 -1.26 5.40 -26.39 -0.14 -1.40 16 21 C -0.12 -0.97 5.67 -26.69 -0.15 -1.12 16 22 C -0.13 -1.15 5.55 -26.61 -0.15 -1.30 16 23 C 0.13 1.39 3.08 -67.60 -0.21 1.18 16 24 H 0.09 1.04 5.99 -51.93 -0.31 0.72 16 25 C -0.16 -1.45 9.02 37.16 0.34 -1.11 16 26 H 0.05 0.79 8.14 -51.92 -0.42 0.36 16 27 H 0.04 0.68 6.26 -51.93 -0.32 0.35 16 28 H 0.07 1.37 6.37 -51.93 -0.33 1.04 16 29 H 0.08 1.82 6.74 -51.93 -0.35 1.47 16 30 H 0.07 1.41 6.02 -51.93 -0.31 1.10 16 31 H 0.00 -0.10 6.10 -51.93 -0.32 -0.42 16 32 H 0.03 0.82 7.92 -51.93 -0.41 0.41 16 33 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 34 H 0.05 0.89 5.81 -51.93 -0.30 0.59 16 35 H 0.09 1.61 7.47 -51.93 -0.39 1.22 16 36 H 0.07 1.19 6.74 -51.93 -0.35 0.84 16 37 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 1.12 6.76 -51.93 -0.35 0.77 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.06 0.48 6.49 -51.93 -0.34 0.15 16 43 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.06 0.51 5.71 -51.93 -0.30 0.21 16 46 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 47 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 345.19 15.07 5.20 5.20 Total: -1.00 -31.13 345.19 -9.00 -40.13 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -8.08 Total: -0.59 kcal Atomic # 6 Polarization: -4.22 SS G_CDS: -0.43 Total: -4.64 kcal Atomic # 7 Polarization: -46.33 SS G_CDS: -0.73 Total: -47.06 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.06 Total: -10.01 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.13 -9.00 -40.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348539563.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.077 kcal (2) G-P(sol) polarization free energy of solvation -31.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds