Wall clock time and date at job start Tue Mar 31 2020 05:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46506 * 109.46992 * 2 1 4 4 C 1.46499 * 119.99936 * 90.00137 * 3 2 1 5 5 C 1.50703 * 109.47126 * 89.99796 * 4 3 2 6 6 H 1.08002 * 119.99820 * 359.97438 * 5 4 3 7 7 C 1.37876 * 119.99889 * 180.02562 * 5 4 3 8 8 N 1.31520 * 119.99905 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 120.00302 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.47082 * 89.99861 * 9 7 5 11 11 H 1.48492 * 109.47090 * 210.00394 * 9 7 5 12 12 H 1.48499 * 109.46812 * 330.00449 * 9 7 5 13 13 C 1.34773 * 119.99969 * 269.72101 * 3 2 1 14 14 O 1.21283 * 120.00092 * 180.02562 * 13 3 2 15 15 C 1.50702 * 120.00430 * 0.02562 * 13 3 2 16 16 N 1.46891 * 109.47259 * 179.97438 * 15 13 3 17 17 C 1.47849 * 110.99683 * 290.83621 * 16 15 13 18 18 C 1.54913 * 104.79777 * 213.63659 * 17 16 15 19 19 H 1.08998 * 110.99236 * 278.98944 * 18 17 16 20 20 C 1.52992 * 110.99106 * 155.16094 * 18 17 16 21 21 C 1.55140 * 101.64781 * 37.07303 * 18 17 16 22 22 C 1.47445 * 110.99717 * 169.99887 * 16 15 13 23 23 C 1.53004 * 109.88640 * 242.65805 * 22 16 15 24 24 C 1.52997 * 109.89081 * 3.68679 * 22 16 15 25 25 H 1.09000 * 109.47214 * 300.00285 * 1 2 3 26 26 H 1.09008 * 109.47142 * 59.99450 * 1 2 3 27 27 H 1.08992 * 109.47123 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46884 * 240.00615 * 2 1 3 29 29 H 1.09000 * 109.46955 * 119.99931 * 2 1 3 30 30 H 1.08994 * 109.47173 * 210.00167 * 4 3 2 31 31 H 1.09005 * 109.47077 * 330.00338 * 4 3 2 32 32 H 0.96998 * 119.99775 * 179.97438 * 8 7 5 33 33 H 1.09009 * 109.46564 * 299.99895 * 15 13 3 34 34 H 1.09001 * 109.47030 * 59.99569 * 15 13 3 35 35 H 1.08997 * 110.37801 * 332.47199 * 17 16 15 36 36 H 1.09006 * 110.37277 * 94.81352 * 17 16 15 37 37 H 1.08993 * 109.47714 * 307.73868 * 20 18 17 38 38 H 1.09002 * 109.47076 * 67.73728 * 20 18 17 39 39 H 1.08995 * 109.47087 * 187.73511 * 20 18 17 40 40 H 1.09000 * 110.70637 * 205.96062 * 21 18 17 41 41 H 1.09003 * 110.85725 * 82.80138 * 21 18 17 42 42 H 1.08995 * 109.46815 * 61.45663 * 23 22 16 43 43 H 1.09002 * 109.46734 * 181.45221 * 23 22 16 44 44 H 1.09003 * 109.47143 * 301.45340 * 23 22 16 45 45 H 1.09002 * 109.46917 * 58.54564 * 24 22 16 46 46 H 1.09003 * 109.47136 * 178.54468 * 24 22 16 47 47 H 1.08995 * 109.46809 * 298.54597 * 24 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 1.2687 5 6 3.6858 1.8350 1.7038 6 1 4.3426 1.2302 1.0961 7 6 4.1491 2.3896 2.8780 8 7 5.3911 2.1825 3.2579 9 14 3.0128 3.4352 3.9293 10 1 2.3070 2.5689 4.9075 11 1 3.8103 4.4552 4.6563 12 1 2.0177 4.1124 3.0597 13 6 2.2483 2.0147 -1.1672 14 8 2.6530 3.1580 -1.1672 15 6 2.0026 1.3025 -2.4723 16 7 2.3254 2.2008 -3.5887 17 6 1.3486 3.3071 -3.6780 18 6 1.2244 3.6039 -5.1934 19 1 2.0473 4.2305 -5.5373 20 6 -0.1249 4.2484 -5.5168 21 6 1.3196 2.1794 -5.8004 22 6 2.3272 1.4715 -4.8702 23 6 3.7253 1.5122 -5.4903 24 6 1.9006 0.0198 -4.6436 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5140 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5137 -0.8901 29 1 1.8933 -0.5138 0.8900 30 1 2.0955 3.1410 1.1384 31 1 1.5817 1.6877 2.0284 32 1 5.7171 2.5730 4.0838 33 1 2.6328 0.4146 -2.5259 34 1 0.9548 1.0085 -2.5342 35 1 0.3859 2.9970 -3.2719 36 1 1.7199 4.1847 -3.1487 37 1 -0.9276 3.6380 -5.1034 38 1 -0.1651 5.2461 -5.0795 39 1 -0.2432 4.3205 -6.5979 40 1 1.7001 2.2200 -6.8210 41 1 0.3513 1.6796 -5.7712 42 1 4.4336 1.0229 -4.8217 43 1 3.7128 0.9936 -6.4489 44 1 4.0255 2.5491 -5.6419 45 1 0.9073 -0.0011 -4.1950 46 1 1.8793 -0.5059 -5.5982 47 1 2.6111 -0.4676 -3.9761 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000350162138.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:20 Heat of formation + Delta-G solvation = -29.268777 kcal Electronic energy + Delta-G solvation = -23928.644955 eV Core-core repulsion = 20725.541651 eV Total energy + Delta-G solvation = -3203.103305 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.26125 -38.54810 -35.28802 -33.89677 -32.75718 -32.21138 -30.29634 -28.74125 -27.65553 -26.88186 -25.76489 -24.29089 -22.94324 -21.94335 -20.44030 -18.88950 -18.15150 -16.87587 -16.67988 -15.83581 -15.47512 -15.16920 -14.84357 -14.31158 -13.94003 -13.80561 -13.45948 -13.31777 -13.12856 -12.99979 -12.67908 -12.43165 -12.27720 -12.21906 -12.03354 -11.90659 -11.74349 -11.56962 -11.45639 -11.27102 -11.05848 -10.92126 -10.70232 -10.64500 -10.58056 -10.44537 -10.36572 -10.05299 -9.48311 -8.87006 -8.54682 -8.06352 -7.62732 -6.03969 -4.01987 3.29439 3.37603 3.42428 3.45854 3.66358 4.16463 4.43768 4.52212 4.55169 4.75058 5.06029 5.08022 5.13501 5.21750 5.27481 5.30268 5.36904 5.43270 5.47316 5.55408 5.56859 5.58743 5.61104 5.69189 5.73836 5.76885 5.85485 5.90907 5.97130 5.98440 6.00355 6.07794 6.15962 6.26335 6.34341 6.39726 6.43141 6.71335 7.01759 7.15867 7.21203 7.45268 7.67122 8.35609 8.53102 8.99735 9.12800 9.56890 11.09638 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021012 B = 0.004551 C = 0.004448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.226726 B = 6150.645653 C = 6294.075570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.597 5.597 4 C 0.218 3.782 5 C -0.525 4.525 6 H 0.074 0.926 7 C 0.072 3.928 8 N -0.899 5.899 9 Si 0.874 3.126 10 H -0.276 1.276 11 H -0.284 1.284 12 H -0.264 1.264 13 C 0.508 3.492 14 O -0.522 6.522 15 C 0.032 3.968 16 N -0.500 5.500 17 C 0.055 3.945 18 C -0.104 4.104 19 H 0.083 0.917 20 C -0.140 4.140 21 C -0.127 4.127 22 C 0.093 3.907 23 C -0.126 4.126 24 C -0.165 4.165 25 H 0.059 0.941 26 H 0.048 0.952 27 H 0.061 0.939 28 H 0.065 0.935 29 H 0.084 0.916 30 H 0.039 0.961 31 H 0.023 0.977 32 H 0.264 0.736 33 H 0.101 0.899 34 H 0.057 0.943 35 H 0.039 0.961 36 H 0.091 0.909 37 H 0.052 0.948 38 H 0.057 0.943 39 H 0.054 0.946 40 H 0.072 0.928 41 H 0.066 0.934 42 H 0.058 0.942 43 H 0.052 0.948 44 H 0.059 0.941 45 H 0.056 0.944 46 H 0.060 0.940 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.248 -4.331 -17.613 21.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.017 4.017 3 N -0.330 5.330 4 C 0.098 3.902 5 C -0.564 4.564 6 H 0.092 0.908 7 C -0.130 4.130 8 N -0.537 5.537 9 Si 0.701 3.299 10 H -0.202 1.202 11 H -0.210 1.210 12 H -0.189 1.189 13 C 0.293 3.707 14 O -0.398 6.398 15 C -0.099 4.099 16 N -0.224 5.224 17 C -0.072 4.072 18 C -0.123 4.123 19 H 0.102 0.898 20 C -0.198 4.198 21 C -0.166 4.166 22 C 0.003 3.997 23 C -0.184 4.184 24 C -0.223 4.223 25 H 0.078 0.922 26 H 0.068 0.932 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.102 0.898 30 H 0.057 0.943 31 H 0.041 0.959 32 H 0.074 0.926 33 H 0.119 0.881 34 H 0.075 0.925 35 H 0.057 0.943 36 H 0.110 0.890 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.091 0.909 41 H 0.085 0.915 42 H 0.077 0.923 43 H 0.071 0.929 44 H 0.078 0.922 45 H 0.075 0.925 46 H 0.079 0.921 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -11.393 -3.467 -17.339 21.035 hybrid contribution -1.217 0.000 0.672 1.391 sum -12.610 -3.466 -16.667 21.186 Atomic orbital electron populations 1.22231 0.96968 1.01450 1.02079 1.21410 0.93228 0.84152 1.02949 1.47933 1.64733 1.13335 1.07012 1.19600 0.96999 0.93559 0.80077 1.21352 0.95447 1.32631 1.06966 0.90787 1.24855 0.94998 0.95792 0.97384 1.69903 1.15195 1.45128 1.23508 0.86871 0.81324 0.80914 0.80772 1.20181 1.20981 1.18903 1.20253 0.78511 0.87156 0.84740 1.90649 1.44246 1.17984 1.86894 1.22364 1.00193 0.96683 0.90637 1.63264 1.48983 1.09159 1.01016 1.23133 0.93254 0.95707 0.95135 1.22311 0.98229 0.96085 0.95679 0.89845 1.21696 0.96147 1.00788 1.01128 1.22936 0.98851 0.95630 0.99136 1.21791 0.95914 0.92408 0.89571 1.21741 0.95328 1.02235 0.99136 1.22426 1.01434 0.96284 1.02195 0.92221 0.93247 0.92047 0.91659 0.89778 0.94285 0.95914 0.92643 0.88067 0.92541 0.94272 0.89047 0.92855 0.92365 0.92643 0.90918 0.91513 0.92271 0.92919 0.92166 0.92476 0.92128 0.91532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.14 10.24 37.16 0.38 -1.76 16 2 C 0.11 1.68 5.94 -4.04 -0.02 1.65 16 3 N -0.60 -12.43 2.46 -175.05 -0.43 -12.86 16 4 C 0.22 5.43 4.23 -5.19 -0.02 5.41 16 5 C -0.53 -15.36 9.94 -34.44 -0.34 -15.71 16 6 H 0.07 2.38 8.06 -52.49 -0.42 1.96 16 7 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 8 N -0.90 -28.16 13.96 55.43 0.77 -27.38 16 9 Si 0.87 21.90 27.47 -169.99 -4.67 17.23 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 12 H -0.26 -6.49 6.54 56.52 0.37 -6.12 16 13 C 0.51 10.60 7.47 -10.99 -0.08 10.52 16 14 O -0.52 -13.18 14.62 5.55 0.08 -13.10 16 15 C 0.03 0.50 2.73 -4.98 -0.01 0.49 16 16 N -0.50 -7.61 4.49 -217.16 -0.98 -8.59 16 17 C 0.06 0.80 5.21 -2.29 -0.01 0.79 16 18 C -0.10 -1.16 3.63 -88.48 -0.32 -1.48 16 19 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 20 C -0.14 -1.29 9.31 37.15 0.35 -0.94 16 21 C -0.13 -1.27 5.48 -24.91 -0.14 -1.40 16 22 C 0.09 1.08 1.15 -130.61 -0.15 0.93 16 23 C -0.13 -1.44 8.70 37.16 0.32 -1.12 16 24 C -0.17 -1.64 7.15 37.16 0.27 -1.37 16 25 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 26 H 0.05 0.60 7.26 -51.92 -0.38 0.22 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.07 0.87 6.43 -51.93 -0.33 0.53 16 29 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16 30 H 0.04 1.05 6.48 -51.93 -0.34 0.72 16 31 H 0.02 0.53 7.50 -51.93 -0.39 0.14 16 32 H 0.26 7.71 8.31 -40.82 -0.34 7.38 16 33 H 0.10 1.46 5.33 -51.92 -0.28 1.19 16 34 H 0.06 0.76 5.89 -51.93 -0.31 0.45 16 35 H 0.04 0.56 7.47 -51.93 -0.39 0.17 16 36 H 0.09 1.59 7.38 -51.93 -0.38 1.20 16 37 H 0.05 0.48 8.07 -51.93 -0.42 0.06 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.07 0.64 7.83 -51.93 -0.41 0.23 16 41 H 0.07 0.62 7.76 -51.93 -0.40 0.22 16 42 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.06 0.55 6.91 -51.93 -0.36 0.19 16 46 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.07 0.68 6.43 -51.93 -0.33 0.35 16 LS Contribution 358.84 15.07 5.41 5.41 Total: -1.00 -34.06 358.84 -8.22 -42.29 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -8.52 Total: -1.03 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: 0.11 Total: -1.97 kcal Atomic # 7 Polarization: -48.20 SS G_CDS: -0.63 Total: -48.83 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: 0.08 Total: -13.10 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.67 Total: 17.23 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.06 -8.22 -42.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350162138.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.019 kcal (2) G-P(sol) polarization free energy of solvation -34.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds