Wall clock time and date at job start Tue Mar 31 2020 05:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46897 * 110.99938 * 2 1 4 4 C 1.46901 * 111.00080 * 123.95523 * 2 1 3 5 5 C 1.53000 * 109.47196 * 169.99894 * 4 2 1 6 6 C 1.53115 * 109.52596 * 294.68393 * 5 4 2 7 7 C 1.53034 * 109.28005 * 182.43887 * 6 5 4 8 8 N 1.46846 * 109.52372 * 59.18003 * 7 6 5 9 9 C 1.46898 * 111.00272 * 174.15714 * 8 7 6 10 10 C 1.53002 * 109.47505 * 210.93684 * 9 8 7 11 11 C 1.53000 * 109.47275 * 295.36348 * 10 9 8 12 12 C 1.52997 * 109.46595 * 55.35913 * 10 9 8 13 13 C 1.52996 * 109.47354 * 175.36232 * 10 9 8 14 14 C 1.50700 * 109.47069 * 180.02562 * 13 10 9 15 15 H 1.07988 * 120.00078 * 359.97438 * 14 13 10 16 16 C 1.37882 * 119.99754 * 179.97438 * 14 13 10 17 17 N 1.31516 * 119.99709 * 359.97438 * 16 14 13 18 18 Si 1.86792 * 120.00045 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.47379 * 89.99712 * 18 16 14 20 20 H 1.48495 * 109.47555 * 210.00231 * 18 16 14 21 21 H 1.48505 * 109.47112 * 330.00034 * 18 16 14 22 22 C 1.46850 * 111.19916 * 298.26084 * 8 7 6 23 23 C 1.53031 * 109.52394 * 61.73796 * 22 8 7 24 24 H 1.09003 * 109.46923 * 56.04840 * 1 2 3 25 25 H 1.08992 * 109.47623 * 296.04504 * 1 2 3 26 26 H 1.09004 * 109.47078 * 176.04463 * 1 2 3 27 27 H 1.09000 * 109.47221 * 60.00280 * 3 2 1 28 28 H 1.09009 * 109.47013 * 179.97438 * 3 2 1 29 29 H 1.08994 * 109.47643 * 299.99795 * 3 2 1 30 30 H 1.08996 * 109.47388 * 290.00086 * 4 2 1 31 31 H 1.09000 * 109.47216 * 49.99999 * 4 2 1 32 32 H 1.09000 * 109.52493 * 54.87562 * 5 4 2 33 33 H 1.09000 * 109.50324 * 302.38117 * 6 5 4 34 34 H 1.08999 * 109.50475 * 62.49657 * 6 5 4 35 35 H 1.08993 * 109.46563 * 299.16272 * 7 6 5 36 36 H 1.09000 * 109.45513 * 179.18990 * 7 6 5 37 37 H 1.08998 * 109.47328 * 330.94557 * 9 8 7 38 38 H 1.09007 * 109.47018 * 90.94262 * 9 8 7 39 39 H 1.08999 * 109.47496 * 71.63079 * 11 10 9 40 40 H 1.09001 * 109.47440 * 191.63192 * 11 10 9 41 41 H 1.08997 * 109.46983 * 311.63416 * 11 10 9 42 42 H 1.09004 * 109.47389 * 55.69209 * 12 10 9 43 43 H 1.09005 * 109.47212 * 175.68217 * 12 10 9 44 44 H 1.08993 * 109.47741 * 295.68414 * 12 10 9 45 45 H 1.09004 * 109.46662 * 300.00620 * 13 10 9 46 46 H 1.08997 * 109.47267 * 59.99603 * 13 10 9 47 47 H 0.97009 * 119.99571 * 180.02562 * 17 16 14 48 48 H 1.09004 * 109.45786 * 301.72083 * 22 8 7 49 49 H 1.08997 * 109.45329 * 181.75191 * 22 8 7 50 50 H 1.09000 * 109.50220 * 180.88528 * 23 22 8 51 51 H 1.08998 * 109.50522 * 60.76761 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 3.5044 -0.9554 0.9703 6 6 3.7776 -1.8285 -0.2575 7 6 5.2843 -2.0646 -0.3844 8 7 5.7814 -2.7257 0.8289 9 6 7.1965 -3.0930 0.6862 10 6 7.4802 -4.3568 1.5006 11 6 7.2787 -4.0610 2.9882 12 6 6.5221 -5.4682 1.0674 13 6 8.9232 -4.8051 1.2607 14 6 9.2023 -6.0503 2.0623 15 1 8.4281 -6.4788 2.6814 16 6 10.4461 -6.6424 2.0054 17 7 11.3888 -6.1208 1.2511 18 14 10.7924 -8.1854 2.9996 19 1 10.4594 -9.3830 2.1870 20 1 12.2297 -8.2231 3.3708 21 1 9.9631 -8.1770 4.2315 22 6 5.5727 -1.8853 2.0150 23 6 4.0747 -1.6438 2.2135 24 1 -0.3633 0.5740 -0.8525 25 1 -0.3634 0.4512 0.9232 26 1 -0.3633 -1.0253 -0.0709 27 1 1.6459 1.8947 0.8900 28 1 3.0851 1.3423 0.0005 29 1 1.6460 1.8948 -0.8899 30 1 1.7975 -0.2249 2.0628 31 1 1.5089 -1.7407 1.1756 32 1 3.9814 0.0161 0.8410 33 1 3.2676 -2.7851 -0.1445 34 1 3.4118 -1.3238 -1.1516 35 1 5.7923 -1.1087 -0.5112 36 1 5.4809 -2.6979 -1.2495 37 1 7.4193 -3.2799 -0.3642 38 1 7.8220 -2.2780 1.0508 39 1 6.2149 -3.9437 3.1946 40 1 7.6747 -4.8864 3.5797 41 1 7.8030 -3.1419 3.2500 42 1 6.6111 -5.6263 -0.0074 43 1 6.7737 -6.3899 1.5921 44 1 5.4989 -5.1805 1.3088 45 1 9.0666 -5.0158 0.2009 46 1 9.6057 -4.0132 1.5692 47 1 12.2638 -6.5376 1.2108 48 1 6.0795 -0.9302 1.8769 49 1 5.9789 -2.3885 2.8924 50 1 3.9210 -1.0071 3.0847 51 1 3.5693 -2.5975 2.3654 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000350175996.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:45 Heat of formation + Delta-G solvation = -10.825993 kcal Electronic energy + Delta-G solvation = -23642.791290 eV Core-core repulsion = 20576.320819 eV Total energy + Delta-G solvation = -3066.470471 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.49420 -37.77979 -35.97892 -33.13814 -31.94230 -30.70502 -28.04870 -27.85671 -26.84670 -26.29283 -25.23111 -23.24748 -22.84924 -22.09753 -20.79637 -19.52204 -17.80262 -16.16012 -15.89848 -15.59878 -15.49405 -14.90265 -14.73941 -14.50013 -14.24086 -13.85639 -13.45388 -12.97522 -12.85290 -12.68835 -12.63607 -12.35896 -12.16598 -12.00612 -11.98881 -11.86969 -11.66358 -11.37181 -11.04592 -10.86713 -10.77181 -10.69884 -10.51496 -10.46508 -10.22837 -10.20610 -10.14614 -9.78161 -9.53557 -8.88159 -8.77697 -8.59112 -8.26947 -7.80962 -5.91816 -3.91291 3.36356 3.42737 3.45638 3.70250 4.27845 4.53372 4.64176 4.81749 4.86284 4.98943 5.07283 5.20560 5.24034 5.37009 5.42909 5.43973 5.45229 5.53538 5.57641 5.58666 5.65518 5.72794 5.76657 5.82206 5.94387 5.98224 6.08000 6.12365 6.17546 6.25470 6.30571 6.35589 6.44964 6.50424 6.64893 6.76962 6.78982 6.81438 6.89979 6.94597 7.32230 7.33776 7.38091 7.55782 7.60950 7.77657 7.93396 8.09379 8.54507 9.14251 9.70984 11.19924 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.044597 B = 0.003025 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.690893 B = 9255.139757 C = 9373.606071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.545 5.545 3 C 0.021 3.979 4 C 0.060 3.940 5 C -0.084 4.084 6 C -0.098 4.098 7 C 0.054 3.946 8 N -0.529 5.529 9 C 0.066 3.934 10 C -0.051 4.051 11 C -0.132 4.132 12 C -0.113 4.113 13 C 0.032 3.968 14 C -0.504 4.504 15 H 0.059 0.941 16 C 0.053 3.947 17 N -0.898 5.898 18 Si 0.887 3.113 19 H -0.282 1.282 20 H -0.289 1.289 21 H -0.275 1.275 22 C 0.041 3.959 23 C -0.110 4.110 24 H 0.066 0.934 25 H 0.022 0.978 26 H 0.068 0.932 27 H 0.022 0.978 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.031 0.969 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.023 0.977 36 H 0.071 0.929 37 H 0.062 0.938 38 H 0.030 0.970 39 H 0.043 0.957 40 H 0.064 0.936 41 H 0.034 0.966 42 H 0.034 0.966 43 H 0.053 0.947 44 H 0.043 0.957 45 H 0.013 0.987 46 H 0.011 0.989 47 H 0.258 0.742 48 H 0.022 0.978 49 H 0.095 0.905 50 H 0.058 0.942 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.437 13.528 -1.244 23.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.268 5.268 3 C -0.127 4.127 4 C -0.068 4.068 5 C -0.103 4.103 6 C -0.136 4.136 7 C -0.074 4.074 8 N -0.253 5.253 9 C -0.061 4.061 10 C -0.051 4.051 11 C -0.188 4.188 12 C -0.170 4.170 13 C -0.005 4.005 14 C -0.542 4.542 15 H 0.078 0.922 16 C -0.147 4.147 17 N -0.539 5.539 18 Si 0.715 3.285 19 H -0.208 1.208 20 H -0.215 1.215 21 H -0.199 1.199 22 C -0.086 4.086 23 C -0.148 4.148 24 H 0.085 0.915 25 H 0.041 0.959 26 H 0.087 0.913 27 H 0.041 0.959 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.049 0.951 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.041 0.959 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.049 0.951 39 H 0.062 0.938 40 H 0.083 0.917 41 H 0.054 0.946 42 H 0.053 0.947 43 H 0.072 0.928 44 H 0.062 0.938 45 H 0.032 0.968 46 H 0.030 0.970 47 H 0.068 0.932 48 H 0.040 0.960 49 H 0.113 0.887 50 H 0.077 0.923 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -19.374 12.854 -1.668 23.310 hybrid contribution 0.593 0.399 1.080 1.296 sum -18.781 13.253 -0.588 22.994 Atomic orbital electron populations 1.22370 0.87534 1.02242 1.00214 1.61957 1.07538 1.13757 1.43560 1.22438 1.01190 0.88800 1.00284 1.22218 0.95840 0.98037 0.90661 1.21237 0.93761 0.99091 0.96221 1.21487 0.95056 0.99589 0.97441 1.22142 0.95336 0.96646 0.93290 1.61917 1.19323 1.42022 1.02038 1.22325 0.85878 0.97612 1.00331 1.20545 0.98324 0.92663 0.93606 1.21975 0.98810 1.00825 0.97234 1.21565 0.97548 0.98250 0.99648 1.19129 0.88697 0.95886 0.96801 1.21247 0.96788 1.09911 1.26282 0.92246 1.25020 0.96538 0.97356 0.95759 1.69975 1.03766 1.40291 1.39826 0.86673 0.77291 0.83918 0.80587 1.20810 1.21451 1.19949 1.22489 0.95444 0.95146 0.95551 1.21606 0.96126 1.00658 0.96448 0.91525 0.95925 0.91330 0.95924 0.90990 0.91583 0.95118 0.90637 0.91717 0.91517 0.91107 0.95920 0.91079 0.91922 0.95118 0.93818 0.91732 0.94649 0.94651 0.92800 0.93776 0.96824 0.97035 0.93233 0.95969 0.88668 0.92335 0.91060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.57 60.06 0.57 0.76 16 2 N -0.54 -4.92 4.54 -251.27 -1.14 -6.06 16 3 C 0.02 0.17 9.41 60.06 0.57 0.73 16 4 C 0.06 0.56 4.35 -3.82 -0.02 0.54 16 5 C -0.08 -0.87 2.18 -90.50 -0.20 -1.07 16 6 C -0.10 -1.12 5.24 -26.65 -0.14 -1.26 16 7 C 0.05 0.72 5.36 -3.84 -0.02 0.70 16 8 N -0.53 -7.96 3.60 -234.67 -0.85 -8.81 16 9 C 0.07 1.17 4.24 -3.82 -0.02 1.16 16 10 C -0.05 -1.03 0.60 -154.51 -0.09 -1.13 16 11 C -0.13 -2.51 6.83 37.16 0.25 -2.26 16 12 C -0.11 -2.24 7.99 37.16 0.30 -1.94 16 13 C 0.03 0.83 4.04 -27.89 -0.11 0.71 16 14 C -0.50 -13.92 7.43 -34.44 -0.26 -14.18 16 15 H 0.06 1.60 5.76 -52.49 -0.30 1.30 16 16 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 17 N -0.90 -27.14 13.29 55.43 0.74 -26.41 16 18 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 19 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 21 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 22 C 0.04 0.56 4.90 -3.83 -0.02 0.55 16 23 C -0.11 -1.23 5.38 -26.65 -0.14 -1.38 16 24 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.02 0.16 8.14 -51.93 -0.42 -0.26 16 26 H 0.07 0.49 8.12 -51.93 -0.42 0.07 16 27 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 28 H 0.07 0.60 6.20 -51.92 -0.32 0.28 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.03 0.28 8.12 -51.93 -0.42 -0.14 16 31 H 0.08 0.71 8.06 -51.93 -0.42 0.29 16 32 H 0.06 0.69 6.26 -51.93 -0.33 0.37 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.07 0.80 7.84 -51.93 -0.41 0.39 16 35 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.07 0.97 7.90 -51.93 -0.41 0.56 16 37 H 0.06 1.14 7.62 -51.93 -0.40 0.74 16 38 H 0.03 0.56 7.80 -51.92 -0.40 0.15 16 39 H 0.04 0.74 6.18 -51.93 -0.32 0.42 16 40 H 0.06 1.36 6.32 -51.93 -0.33 1.03 16 41 H 0.03 0.65 7.74 -51.93 -0.40 0.25 16 42 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.05 1.15 6.49 -51.93 -0.34 0.81 16 44 H 0.04 0.80 7.60 -51.93 -0.39 0.40 16 45 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 47 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 48 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 49 H 0.10 1.38 4.14 -51.93 -0.22 1.17 16 50 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 51 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 373.44 15.07 5.63 5.63 Total: -1.00 -29.17 373.44 -10.10 -39.27 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -10.04 Total: -3.77 kcal Atomic # 6 Polarization: -17.21 SS G_CDS: 0.58 Total: -16.63 kcal Atomic # 7 Polarization: -40.03 SS G_CDS: -1.25 Total: -41.28 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -29.17 -10.10 -39.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350175996.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.442 kcal (2) G-P(sol) polarization free energy of solvation -29.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds