Wall clock time and date at job start Tue Mar 31 2020 06:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47271 * 2 1 4 4 C 1.53005 * 109.46841 * 119.99557 * 2 1 3 5 5 C 1.50700 * 109.46778 * 183.42191 * 4 2 1 6 6 H 1.07997 * 120.00569 * 5.04186 * 5 4 2 7 7 C 1.37883 * 119.99709 * 184.76775 * 5 4 2 8 8 N 1.31511 * 119.99916 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99675 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47466 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.46796 * 120.00373 * 9 7 5 12 12 H 1.48501 * 109.47019 * 239.99976 * 9 7 5 13 13 N 1.46892 * 109.47179 * 239.99406 * 2 1 3 14 14 C 1.46960 * 111.00022 * 72.16101 * 13 2 1 15 15 C 1.53043 * 109.36574 * 176.81046 * 14 13 2 16 16 N 1.46961 * 109.36689 * 58.40287 * 15 14 13 17 17 C 1.46904 * 111.00119 * 176.81007 * 16 15 14 18 18 C 1.52991 * 109.47019 * 313.79850 * 17 16 15 19 19 C 1.53005 * 109.47216 * 179.97438 * 18 17 16 20 20 C 1.53006 * 109.46667 * 59.99858 * 19 18 17 21 21 C 1.52991 * 109.47216 * 179.97438 * 19 18 17 22 22 C 1.52997 * 109.47056 * 300.00254 * 19 18 17 23 23 C 1.46959 * 110.87709 * 300.67641 * 16 15 14 24 24 C 1.46951 * 111.00339 * 308.36209 * 13 2 1 25 25 H 1.09002 * 109.47194 * 300.00606 * 1 2 3 26 26 H 1.08996 * 109.46993 * 60.00071 * 1 2 3 27 27 H 1.08998 * 109.47014 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47363 * 63.42609 * 4 2 1 29 29 H 1.09000 * 109.47043 * 303.42267 * 4 2 1 30 30 H 0.97005 * 119.99833 * 180.02562 * 8 7 5 31 31 H 1.09004 * 109.48765 * 296.78178 * 14 13 2 32 32 H 1.09007 * 109.48777 * 56.84280 * 14 13 2 33 33 H 1.08998 * 109.49147 * 298.43330 * 15 14 13 34 34 H 1.09002 * 109.49091 * 178.36991 * 15 14 13 35 35 H 1.09006 * 109.46654 * 73.79875 * 17 16 15 36 36 H 1.08994 * 109.46604 * 193.79592 * 17 16 15 37 37 H 1.09004 * 109.47636 * 300.00052 * 18 17 16 38 38 H 1.09004 * 109.47635 * 60.00275 * 18 17 16 39 39 H 1.08998 * 109.46888 * 60.00193 * 20 19 18 40 40 H 1.08997 * 109.46679 * 180.02562 * 20 19 18 41 41 H 1.08999 * 109.46914 * 300.00093 * 20 19 18 42 42 H 1.08994 * 109.47643 * 60.00561 * 21 19 18 43 43 H 1.09005 * 109.47143 * 180.02562 * 21 19 18 44 44 H 1.09006 * 109.47428 * 299.99733 * 21 19 18 45 45 H 1.09003 * 109.47346 * 59.99807 * 22 19 18 46 46 H 1.09002 * 109.47112 * 179.97438 * 22 19 18 47 47 H 1.08994 * 109.47480 * 299.99465 * 22 19 18 48 48 H 1.09000 * 109.49167 * 299.35709 * 23 16 15 49 49 H 1.08997 * 109.48850 * 179.28622 * 23 16 15 50 50 H 1.09001 * 109.48718 * 303.15237 * 24 13 2 51 51 H 1.08999 * 109.49193 * 63.19736 * 24 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 3.5446 -0.6482 1.2925 6 1 4.0786 -0.0700 0.5529 7 6 4.2391 -1.3149 2.2795 8 7 3.5885 -2.0149 3.1830 9 14 6.1041 -1.2237 2.3334 10 1 6.5910 -0.3780 1.2141 11 1 6.5335 -0.6299 3.6250 12 1 6.6704 -2.5905 2.2044 13 7 2.0197 -0.6926 -1.1993 14 6 1.7990 0.1200 -2.4037 15 6 2.3927 -0.5994 -3.6171 16 7 1.7655 -1.9212 -3.7550 17 6 2.2552 -2.6138 -4.9544 18 6 2.2397 -1.6495 -6.1421 19 6 2.7503 -2.3706 -7.3912 20 6 1.8467 -3.5676 -7.6942 21 6 2.7342 -1.4065 -8.5790 22 6 4.1799 -2.8591 -7.1495 23 6 1.9863 -2.7339 -2.5506 24 6 1.3925 -2.0144 -1.3372 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.7276 -1.7650 1.2193 29 1 1.6274 -0.2439 2.1382 30 1 4.0771 -2.4836 3.8776 31 1 0.7290 0.2643 -2.5541 32 1 2.2834 1.0890 -2.2825 33 1 3.4672 -0.7193 -3.4789 34 1 2.2047 -0.0121 -4.5160 35 1 3.2737 -2.9621 -4.7824 36 1 1.6112 -3.4663 -5.1700 37 1 1.2212 -1.3011 -6.3141 38 1 2.8837 -0.7970 -5.9265 39 1 0.8282 -3.2196 -7.8663 40 1 2.2108 -4.0816 -8.5837 41 1 1.8578 -4.2546 -6.8479 42 1 3.3776 -0.5536 -8.3636 43 1 3.0975 -1.9204 -9.4691 44 1 1.7155 -1.0590 -8.7512 45 1 4.1910 -3.5461 -6.3033 46 1 4.5435 -3.3732 -8.0392 47 1 4.8236 -2.0064 -6.9337 48 1 3.0562 -2.8780 -2.4002 49 1 1.5019 -3.7027 -2.6718 50 1 1.5806 -2.6016 -0.4383 51 1 0.3179 -1.8945 -1.4750 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351620726.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:29 Heat of formation + Delta-G solvation = -10.872981 kcal Electronic energy + Delta-G solvation = -23766.420734 eV Core-core repulsion = 20699.948225 eV Total energy + Delta-G solvation = -3066.472508 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.45287 -38.04363 -35.79221 -32.80592 -31.15270 -30.65855 -28.59700 -27.47318 -27.46247 -27.25599 -25.48216 -23.41498 -22.82269 -22.00037 -19.97110 -18.64954 -18.48937 -16.20431 -16.08240 -15.25877 -15.16829 -14.65927 -14.49500 -14.44763 -14.11008 -14.08620 -13.80951 -13.38256 -13.09398 -12.90355 -12.55700 -12.16760 -12.00309 -11.91036 -11.89799 -11.72597 -11.61483 -11.43762 -11.16725 -11.15585 -10.96417 -10.76245 -10.72407 -10.53345 -10.50307 -10.40147 -10.28544 -10.05873 -9.85378 -9.12197 -8.92312 -8.23852 -8.08660 -7.37363 -5.86420 -3.83493 3.38816 3.46249 3.51782 4.06154 4.57214 4.59200 4.62059 4.64272 4.68886 5.11616 5.22184 5.27295 5.35164 5.42963 5.46939 5.50707 5.51792 5.58395 5.58956 5.67665 5.71401 5.73812 5.76601 5.84220 5.86057 5.88476 5.89944 5.94260 5.99073 6.02875 6.05436 6.09796 6.18670 6.24735 6.26272 6.33302 6.43845 6.53036 6.64770 6.74980 7.04781 7.26456 7.29844 7.59436 7.73292 7.96994 8.08318 8.15798 8.61504 9.22057 9.77653 11.25672 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.019550 B = 0.003886 C = 0.003519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.875480 B = 7203.438984 C = 7954.912050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.087 3.913 3 H 0.067 0.933 4 C 0.030 3.970 5 C -0.485 4.485 6 H 0.059 0.941 7 C 0.050 3.950 8 N -0.904 5.904 9 Si 0.888 3.112 10 H -0.274 1.274 11 H -0.288 1.288 12 H -0.287 1.287 13 N -0.510 5.510 14 C 0.054 3.946 15 C 0.056 3.944 16 N -0.540 5.540 17 C 0.053 3.947 18 C -0.111 4.111 19 C -0.069 4.069 20 C -0.143 4.143 21 C -0.140 4.140 22 C -0.145 4.145 23 C 0.059 3.941 24 C 0.060 3.940 25 H 0.054 0.946 26 H 0.039 0.961 27 H 0.053 0.947 28 H 0.022 0.978 29 H 0.015 0.985 30 H 0.256 0.744 31 H 0.032 0.968 32 H 0.070 0.930 33 H 0.039 0.961 34 H 0.075 0.925 35 H 0.035 0.965 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.054 0.946 40 H 0.051 0.949 41 H 0.058 0.942 42 H 0.054 0.946 43 H 0.052 0.948 44 H 0.054 0.946 45 H 0.058 0.942 46 H 0.051 0.949 47 H 0.054 0.946 48 H 0.043 0.957 49 H 0.070 0.930 50 H 0.089 0.911 51 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.255 -0.567 -20.854 21.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.021 4.021 3 H 0.085 0.915 4 C -0.007 4.007 5 C -0.524 4.524 6 H 0.077 0.923 7 C -0.149 4.149 8 N -0.545 5.545 9 Si 0.717 3.283 10 H -0.199 1.199 11 H -0.214 1.214 12 H -0.214 1.214 13 N -0.234 5.234 14 C -0.075 4.075 15 C -0.072 4.072 16 N -0.265 5.265 17 C -0.075 4.075 18 C -0.148 4.148 19 C -0.070 4.070 20 C -0.200 4.200 21 C -0.197 4.197 22 C -0.202 4.202 23 C -0.069 4.069 24 C -0.069 4.069 25 H 0.073 0.927 26 H 0.058 0.942 27 H 0.073 0.927 28 H 0.040 0.960 29 H 0.033 0.967 30 H 0.066 0.934 31 H 0.050 0.950 32 H 0.089 0.911 33 H 0.058 0.942 34 H 0.093 0.907 35 H 0.053 0.947 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.077 0.923 42 H 0.073 0.927 43 H 0.071 0.929 44 H 0.073 0.927 45 H 0.077 0.923 46 H 0.071 0.929 47 H 0.073 0.927 48 H 0.061 0.939 49 H 0.088 0.912 50 H 0.107 0.893 51 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -4.210 -0.669 -20.698 21.132 hybrid contribution 1.063 -0.062 0.148 1.075 sum -3.147 -0.731 -20.550 20.803 Atomic orbital electron populations 1.22502 0.99704 1.01391 1.00522 1.21890 0.90108 0.98117 0.91970 0.91521 1.19188 0.96300 0.95511 0.89706 1.21181 0.91612 1.28889 1.10695 0.92312 1.24994 0.97923 0.95975 0.96031 1.69973 1.34972 1.33441 1.16163 0.86597 0.86643 0.77535 0.77561 1.19871 1.21420 1.21376 1.62273 1.57588 1.02225 1.01317 1.22141 0.98362 0.96582 0.90372 1.22225 0.96985 0.90317 0.97719 1.62279 1.58028 1.03561 1.02639 1.22248 0.98427 0.97028 0.89807 1.21782 1.01728 0.98155 0.93177 1.20538 0.95617 0.95657 0.95169 1.21928 0.99242 0.97513 1.01322 1.21857 1.01690 0.98912 0.97280 1.21945 0.95536 1.01208 1.01519 1.22172 0.99750 0.95785 0.89186 1.22125 0.95709 0.91550 0.97472 0.92719 0.94158 0.92749 0.96000 0.96731 0.93431 0.94986 0.91131 0.94231 0.90726 0.94706 0.90878 0.91265 0.91591 0.92652 0.93025 0.92294 0.92732 0.92850 0.92707 0.92278 0.92947 0.92723 0.93884 0.91198 0.89311 0.94856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.22 8.39 37.16 0.31 -2.91 16 2 C 0.09 1.80 2.26 -67.71 -0.15 1.65 16 3 H 0.07 1.40 7.98 -51.93 -0.41 0.98 16 4 C 0.03 0.77 4.39 -27.88 -0.12 0.64 16 5 C -0.49 -13.68 8.80 -34.44 -0.30 -13.98 16 6 H 0.06 1.67 7.75 -52.49 -0.41 1.26 16 7 C 0.05 1.44 5.46 -17.82 -0.10 1.34 16 8 N -0.90 -27.38 13.29 55.43 0.74 -26.65 16 9 Si 0.89 22.24 29.54 -169.99 -5.02 17.22 16 10 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 12 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 13 N -0.51 -9.91 4.32 -226.49 -0.98 -10.89 16 14 C 0.05 0.88 5.36 -3.77 -0.02 0.86 16 15 C 0.06 0.81 4.93 -3.77 -0.02 0.79 16 16 N -0.54 -7.71 4.86 -234.47 -1.14 -8.85 16 17 C 0.05 0.62 4.57 -3.83 -0.02 0.60 16 18 C -0.11 -1.11 3.53 -26.73 -0.09 -1.20 16 19 C -0.07 -0.59 0.80 -154.51 -0.12 -0.72 16 20 C -0.14 -1.16 8.12 37.16 0.30 -0.85 16 21 C -0.14 -1.08 8.47 37.15 0.31 -0.77 16 22 C -0.14 -1.27 8.12 37.16 0.30 -0.97 16 23 C 0.06 0.94 5.58 -3.76 -0.02 0.92 16 24 C 0.06 1.09 4.70 -3.77 -0.02 1.07 16 25 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 26 H 0.04 0.64 6.84 -51.93 -0.36 0.29 16 27 H 0.05 0.96 6.39 -51.93 -0.33 0.63 16 28 H 0.02 0.59 6.43 -51.93 -0.33 0.26 16 29 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 31 H 0.03 0.52 6.84 -51.93 -0.36 0.16 16 32 H 0.07 1.12 8.05 -51.93 -0.42 0.70 16 33 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.93 5.99 -51.93 -0.31 0.62 16 35 H 0.03 0.43 6.36 -51.93 -0.33 0.10 16 36 H 0.07 0.82 6.43 -51.93 -0.33 0.49 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.69 6.26 -51.93 -0.33 0.37 16 39 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.06 0.50 6.43 -51.93 -0.33 0.16 16 42 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 44 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.06 0.55 6.43 -51.93 -0.33 0.22 16 46 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 49 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 50 H 0.09 1.84 6.36 -51.93 -0.33 1.50 16 51 H 0.03 0.59 6.40 -51.93 -0.33 0.26 16 LS Contribution 371.92 15.07 5.60 5.60 Total: -1.00 -29.63 371.92 -10.43 -40.06 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -9.88 Total: -2.97 kcal Atomic # 6 Polarization: -13.77 SS G_CDS: 0.24 Total: -13.53 kcal Atomic # 7 Polarization: -45.00 SS G_CDS: -1.38 Total: -46.38 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -29.63 -10.43 -40.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351620726.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.186 kcal (2) G-P(sol) polarization free energy of solvation -29.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds