Wall clock time and date at job start Tue Mar 31 2020 06:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.52997 * 109.47127 * 240.00426 * 2 1 3 5 5 C 1.50696 * 109.47268 * 174.99506 * 4 2 1 6 6 H 1.08004 * 119.99945 * 0.02562 * 5 4 2 7 7 C 1.37880 * 120.00438 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99387 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00351 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47234 * 90.00117 * 9 7 5 11 11 H 1.48497 * 109.47345 * 210.00260 * 9 7 5 12 12 H 1.48502 * 109.47091 * 330.00344 * 9 7 5 13 13 N 1.46899 * 109.47163 * 120.00236 * 2 1 3 14 14 C 1.46948 * 111.00033 * 58.80189 * 13 2 1 15 15 C 1.53056 * 109.36577 * 176.81074 * 14 13 2 16 16 N 1.46962 * 109.36062 * 58.39971 * 15 14 13 17 17 C 1.46899 * 110.99727 * 176.81204 * 16 15 14 18 18 C 1.52996 * 109.47288 * 293.80283 * 17 16 15 19 19 C 1.52997 * 109.47306 * 179.97438 * 18 17 16 20 20 C 1.53001 * 109.47188 * 59.99956 * 19 18 17 21 21 C 1.53001 * 109.47420 * 179.97438 * 19 18 17 22 22 C 1.52995 * 109.47386 * 299.99609 * 19 18 17 23 23 C 1.46948 * 110.87941 * 300.68191 * 16 15 14 24 24 C 1.46962 * 110.99727 * 295.00082 * 13 2 1 25 25 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 26 26 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 27 27 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46934 * 294.99762 * 4 2 1 29 29 H 1.09006 * 109.47500 * 54.99635 * 4 2 1 30 30 H 0.97002 * 119.99896 * 179.97438 * 8 7 5 31 31 H 1.09004 * 109.49218 * 296.77655 * 14 13 2 32 32 H 1.08998 * 109.49241 * 56.84045 * 14 13 2 33 33 H 1.08994 * 109.48673 * 298.43564 * 15 14 13 34 34 H 1.08999 * 109.48552 * 178.36506 * 15 14 13 35 35 H 1.09008 * 109.47232 * 53.79853 * 17 16 15 36 36 H 1.08996 * 109.47232 * 173.80081 * 17 16 15 37 37 H 1.09006 * 109.47150 * 299.99963 * 18 17 16 38 38 H 1.09000 * 109.47830 * 59.99524 * 18 17 16 39 39 H 1.08998 * 109.47425 * 59.99634 * 20 19 18 40 40 H 1.09004 * 109.47249 * 180.02562 * 20 19 18 41 41 H 1.09004 * 109.46584 * 299.99930 * 20 19 18 42 42 H 1.09010 * 109.46864 * 59.99960 * 21 19 18 43 43 H 1.08996 * 109.47349 * 179.97438 * 21 19 18 44 44 H 1.08996 * 109.47411 * 300.00208 * 21 19 18 45 45 H 1.09004 * 109.47033 * 59.99675 * 22 19 18 46 46 H 1.08996 * 109.47697 * 180.02562 * 22 19 18 47 47 H 1.09004 * 109.47006 * 300.00564 * 22 19 18 48 48 H 1.09003 * 109.49245 * 299.34953 * 23 16 15 49 49 H 1.08998 * 109.48890 * 179.29317 * 23 16 15 50 50 H 1.09000 * 109.48631 * 303.15232 * 24 13 2 51 51 H 1.08993 * 109.48843 * 63.20545 * 24 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2493 5 6 3.5419 -0.6147 -1.3128 6 1 4.0790 -0.0860 -0.5393 7 6 4.2305 -1.1932 -2.3579 8 7 3.5765 -1.8375 -3.2996 9 14 6.0922 -1.0619 -2.4363 10 1 6.7002 -2.2146 -1.7243 11 1 6.5297 -1.0700 -3.8554 12 1 6.5268 0.2033 -1.7915 13 7 2.0197 -0.6925 1.1994 14 6 1.5253 -2.0755 1.2477 15 6 2.1203 -2.7849 2.4665 16 7 1.7491 -2.0530 3.6856 17 6 2.2388 -2.7455 4.8850 18 6 1.5131 -4.0842 5.0329 19 6 2.0236 -4.8058 6.2818 20 6 1.7557 -3.9415 7.5155 21 6 1.2974 -6.1443 6.4301 22 6 3.5275 -5.0531 6.1490 23 6 2.2436 -0.6700 3.6372 24 6 1.6486 0.0394 2.4185 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.7517 -1.7714 -1.2056 29 1 1.6054 -0.2616 -2.1370 30 1 4.0608 -2.2442 -4.0351 31 1 0.4380 -2.0705 1.3248 32 1 1.8234 -2.6002 0.3401 33 1 3.2061 -2.8139 2.3761 34 1 1.7322 -3.8020 2.5205 35 1 3.3104 -2.9217 4.7908 36 1 2.0477 -2.1296 5.7637 37 1 0.4415 -3.9082 5.1271 38 1 1.7041 -4.7003 4.1542 39 1 0.6843 -3.7653 7.6101 40 1 2.1198 -4.4554 8.4052 41 1 2.2729 -2.9877 7.4100 42 1 1.4878 -6.7604 5.5511 43 1 1.6614 -6.6586 7.3195 44 1 0.2260 -5.9679 6.5249 45 1 4.0447 -4.0993 6.0435 46 1 3.8912 -5.5676 7.0385 47 1 3.7183 -5.6689 5.2700 48 1 3.3309 -0.6750 3.5602 49 1 1.9455 -0.1453 4.5448 50 1 2.0367 1.0565 2.3644 51 1 0.5628 0.0687 2.5087 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351620728.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:31 Heat of formation + Delta-G solvation = -13.051407 kcal Electronic energy + Delta-G solvation = -23759.157302 eV Core-core repulsion = 20692.590330 eV Total energy + Delta-G solvation = -3066.566972 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.38521 -38.03461 -35.79617 -32.81621 -31.21818 -30.46009 -28.76846 -27.46658 -27.44313 -27.24677 -25.28496 -23.36240 -23.03695 -21.85527 -20.01434 -18.67148 -18.47608 -16.17765 -16.12995 -15.24488 -14.99362 -14.72139 -14.53019 -14.45656 -14.15805 -13.93283 -13.76942 -13.39727 -13.12836 -12.89184 -12.57634 -12.13287 -12.03584 -11.94389 -11.87224 -11.72399 -11.64656 -11.41872 -11.17881 -11.04263 -10.94053 -10.73990 -10.69825 -10.59347 -10.52619 -10.35684 -10.26301 -10.10614 -9.78623 -9.10975 -8.95361 -8.24376 -8.10439 -7.39470 -5.87704 -3.85336 3.39531 3.45453 3.49754 4.04490 4.56559 4.62049 4.64403 4.67522 4.72513 5.09955 5.26073 5.29936 5.38964 5.44904 5.48898 5.49732 5.51010 5.61022 5.61154 5.66523 5.72979 5.76710 5.78684 5.84987 5.87149 5.88709 5.92793 5.94502 6.01363 6.04488 6.06491 6.12846 6.17964 6.27141 6.29387 6.35120 6.45686 6.54097 6.68221 6.77292 7.02447 7.26942 7.30190 7.58995 7.73383 7.96302 8.06829 8.14952 8.60119 9.20825 9.76305 11.24258 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.017999 B = 0.003967 C = 0.003582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.304410 B = 7055.819670 C = 7816.052655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.087 3.913 3 H 0.068 0.932 4 C 0.029 3.971 5 C -0.490 4.490 6 H 0.060 0.940 7 C 0.051 3.949 8 N -0.904 5.904 9 Si 0.889 3.111 10 H -0.283 1.283 11 H -0.290 1.290 12 H -0.275 1.275 13 N -0.512 5.512 14 C 0.058 3.942 15 C 0.058 3.942 16 N -0.541 5.541 17 C 0.053 3.947 18 C -0.105 4.105 19 C -0.069 4.069 20 C -0.142 4.142 21 C -0.140 4.140 22 C -0.145 4.145 23 C 0.061 3.939 24 C 0.054 3.946 25 H 0.041 0.959 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.020 0.980 29 H 0.018 0.982 30 H 0.257 0.743 31 H 0.032 0.968 32 H 0.093 0.907 33 H 0.042 0.958 34 H 0.072 0.928 35 H 0.034 0.966 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.064 0.936 39 H 0.054 0.946 40 H 0.050 0.950 41 H 0.057 0.943 42 H 0.054 0.946 43 H 0.052 0.948 44 H 0.054 0.946 45 H 0.057 0.943 46 H 0.051 0.949 47 H 0.055 0.945 48 H 0.039 0.961 49 H 0.068 0.932 50 H 0.070 0.930 51 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.107 -4.062 19.552 20.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.021 4.021 3 H 0.087 0.913 4 C -0.008 4.008 5 C -0.528 4.528 6 H 0.078 0.922 7 C -0.149 4.149 8 N -0.545 5.545 9 Si 0.718 3.282 10 H -0.210 1.210 11 H -0.216 1.216 12 H -0.201 1.201 13 N -0.236 5.236 14 C -0.070 4.070 15 C -0.070 4.070 16 N -0.266 5.266 17 C -0.075 4.075 18 C -0.142 4.142 19 C -0.070 4.070 20 C -0.199 4.199 21 C -0.198 4.198 22 C -0.202 4.202 23 C -0.067 4.067 24 C -0.075 4.075 25 H 0.060 0.940 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.038 0.962 29 H 0.036 0.964 30 H 0.067 0.933 31 H 0.050 0.950 32 H 0.111 0.889 33 H 0.060 0.940 34 H 0.091 0.909 35 H 0.052 0.948 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.071 0.929 44 H 0.073 0.927 45 H 0.076 0.924 46 H 0.070 0.930 47 H 0.074 0.926 48 H 0.058 0.942 49 H 0.086 0.914 50 H 0.089 0.911 51 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -5.062 -4.142 19.383 20.456 hybrid contribution 1.059 0.001 -0.140 1.068 sum -4.003 -4.141 19.242 20.086 Atomic orbital electron populations 1.22506 0.99772 1.01318 1.00594 1.21894 0.90075 0.98345 0.91789 0.91340 1.19224 0.96318 0.95364 0.89927 1.21180 0.91828 1.32909 1.06906 0.92213 1.25000 0.97938 0.95930 0.95993 1.69964 1.35158 1.36987 1.12364 0.86642 0.86528 0.78312 0.76750 1.20986 1.21607 1.20052 1.62278 1.58881 1.01439 1.00993 1.22161 0.96623 0.90395 0.97853 1.22222 0.98923 0.96856 0.89025 1.62198 1.59704 1.02345 1.02304 1.22215 0.96996 0.95192 0.93069 1.21635 1.00460 0.95342 0.96805 1.20537 0.95596 0.95403 0.95456 1.21924 1.01559 0.99623 0.96843 1.21858 1.00112 0.96288 1.01495 1.21945 0.95038 1.01736 1.01474 1.22105 0.97945 0.88869 0.97819 1.22127 0.97903 0.97222 0.90236 0.94031 0.92695 0.92918 0.96222 0.96376 0.93342 0.95006 0.88892 0.94018 0.90933 0.94755 0.91111 0.91307 0.91775 0.92664 0.93047 0.92441 0.92663 0.92898 0.92697 0.92377 0.93000 0.92631 0.94236 0.91351 0.91125 0.94749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.24 8.49 37.16 0.32 -2.92 16 2 C 0.09 1.79 2.30 -67.71 -0.16 1.64 16 3 H 0.07 1.45 8.11 -51.93 -0.42 1.02 16 4 C 0.03 0.73 4.27 -27.89 -0.12 0.61 16 5 C -0.49 -13.76 8.84 -34.44 -0.30 -14.07 16 6 H 0.06 1.69 7.74 -52.48 -0.41 1.28 16 7 C 0.05 1.46 5.46 -17.82 -0.10 1.36 16 8 N -0.90 -27.26 13.29 55.43 0.74 -26.53 16 9 Si 0.89 22.18 29.54 -169.99 -5.02 17.16 16 10 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 13 N -0.51 -9.90 4.41 -226.49 -1.00 -10.90 16 14 C 0.06 1.07 4.82 -3.77 -0.02 1.05 16 15 C 0.06 0.92 5.41 -3.76 -0.02 0.90 16 16 N -0.54 -7.69 4.71 -234.47 -1.10 -8.80 16 17 C 0.05 0.62 4.25 -3.83 -0.02 0.61 16 18 C -0.10 -1.10 4.20 -26.73 -0.11 -1.21 16 19 C -0.07 -0.61 0.80 -154.51 -0.12 -0.74 16 20 C -0.14 -1.16 8.12 37.16 0.30 -0.86 16 21 C -0.14 -1.14 8.47 37.16 0.31 -0.83 16 22 C -0.14 -1.30 8.12 37.15 0.30 -1.00 16 23 C 0.06 0.88 5.61 -3.77 -0.02 0.86 16 24 C 0.05 0.87 5.25 -3.77 -0.02 0.85 16 25 H 0.04 0.66 6.59 -51.93 -0.34 0.32 16 26 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.05 0.94 6.46 -51.93 -0.34 0.60 16 28 H 0.02 0.53 6.11 -51.93 -0.32 0.21 16 29 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 31 H 0.03 0.57 6.47 -51.93 -0.34 0.24 16 32 H 0.09 1.97 6.07 -51.93 -0.32 1.65 16 33 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 1.05 6.34 -51.93 -0.33 0.72 16 35 H 0.03 0.42 6.41 -51.92 -0.33 0.09 16 36 H 0.07 0.77 6.31 -51.93 -0.33 0.44 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.06 0.73 6.49 -51.93 -0.34 0.39 16 39 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.06 0.47 6.43 -51.93 -0.33 0.14 16 42 H 0.05 0.46 8.14 -51.92 -0.42 0.04 16 43 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.06 0.54 6.43 -51.93 -0.33 0.21 16 46 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 49 H 0.07 0.84 8.07 -51.93 -0.42 0.43 16 50 H 0.07 1.09 8.12 -51.93 -0.42 0.67 16 51 H 0.03 0.55 6.60 -51.93 -0.34 0.21 16 LS Contribution 372.45 15.07 5.61 5.61 Total: -1.00 -29.38 372.45 -10.41 -39.79 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -9.86 Total: -2.58 kcal Atomic # 6 Polarization: -13.98 SS G_CDS: 0.23 Total: -13.76 kcal Atomic # 7 Polarization: -44.85 SS G_CDS: -1.37 Total: -46.22 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -29.38 -10.41 -39.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351620728.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.734 kcal (2) G-P(sol) polarization free energy of solvation -29.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds