Wall clock time and date at job start Tue Mar 31 2020 05:54:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47204 * 2 1 4 4 N 1.46901 * 109.47450 * 185.74960 * 3 2 1 5 5 C 1.47910 * 110.99707 * 76.27840 * 4 3 2 6 6 C 1.53994 * 107.05470 * 214.15663 * 5 4 3 7 7 C 1.54593 * 105.14380 * 1.22941 * 6 5 4 8 8 C 1.48531 * 110.99582 * 318.88815 * 4 3 2 9 9 H 1.08999 * 110.67143 * 41.28683 * 8 4 3 10 10 C 1.53004 * 110.66616 * 278.14928 * 8 4 3 11 11 N 1.46902 * 109.46652 * 53.81238 * 10 8 4 12 12 C 1.46904 * 110.99716 * 170.74716 * 11 10 8 13 13 C 1.52995 * 109.47179 * 179.97438 * 12 11 10 14 14 C 1.53002 * 109.47262 * 300.00484 * 13 12 11 15 15 C 1.53003 * 109.47056 * 60.00029 * 13 12 11 16 16 C 1.52998 * 109.47478 * 180.02562 * 13 12 11 17 17 C 1.50695 * 109.47442 * 180.02562 * 16 13 12 18 18 H 1.08006 * 119.99760 * 0.02562 * 17 16 13 19 19 C 1.37877 * 120.00127 * 180.02562 * 17 16 13 20 20 N 1.31512 * 120.00026 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 120.00025 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.46983 * 60.00307 * 21 19 17 23 23 H 1.48501 * 109.46982 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47001 * 300.00202 * 21 19 17 25 25 H 1.09003 * 109.47004 * 180.02562 * 1 2 3 26 26 H 1.08993 * 109.47149 * 59.99713 * 1 2 3 27 27 H 1.09001 * 109.46901 * 300.00152 * 1 2 3 28 28 H 1.09004 * 109.46842 * 119.99919 * 2 1 3 29 29 H 1.09001 * 109.46901 * 239.99848 * 2 1 3 30 30 H 1.09009 * 109.47024 * 305.74575 * 3 2 1 31 31 H 1.09001 * 109.47700 * 65.74409 * 3 2 1 32 32 H 1.09000 * 109.92100 * 333.51256 * 5 4 3 33 33 H 1.09000 * 109.91282 * 94.61020 * 5 4 3 34 34 H 1.08998 * 110.30597 * 120.14459 * 6 5 4 35 35 H 1.08998 * 110.30931 * 242.30807 * 6 5 4 36 36 H 1.09002 * 110.72422 * 140.30937 * 7 6 5 37 37 H 1.08994 * 110.72520 * 263.42161 * 7 6 5 38 38 H 1.08998 * 109.46625 * 173.80930 * 10 8 4 39 39 H 1.08992 * 109.47328 * 293.81095 * 10 8 4 40 40 H 1.00895 * 111.00027 * 294.70149 * 11 10 8 41 41 H 1.08998 * 109.47336 * 299.99926 * 12 11 10 42 42 H 1.08997 * 109.46916 * 60.00308 * 12 11 10 43 43 H 1.09002 * 109.47309 * 59.99796 * 14 13 12 44 44 H 1.09006 * 109.46799 * 179.97438 * 14 13 12 45 45 H 1.08997 * 109.47237 * 299.99663 * 14 13 12 46 46 H 1.09006 * 109.46600 * 60.00266 * 15 13 12 47 47 H 1.08997 * 109.47747 * 179.97438 * 15 13 12 48 48 H 1.08995 * 109.47240 * 300.00434 * 15 13 12 49 49 H 1.08998 * 109.47027 * 300.00196 * 16 13 12 50 50 H 1.09000 * 109.47277 * 60.00012 * 16 13 12 51 51 H 0.96997 * 119.99911 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5025 1.4448 -0.1387 5 6 3.9029 1.1631 -1.5345 6 6 5.2149 0.3592 -1.4744 7 6 5.5098 0.1793 0.0324 8 6 4.1168 0.3710 0.6833 9 1 3.5319 -0.5463 0.6173 10 6 4.2582 0.8197 2.1392 11 7 2.9547 1.2764 2.6396 12 6 2.9991 1.5074 4.0897 13 6 1.6270 1.9815 4.5728 14 6 1.2573 3.2838 3.8599 15 6 0.5783 0.9127 4.2585 16 6 1.6733 2.2227 6.0829 17 6 0.3217 2.6891 6.5589 18 1 -0.4894 2.8018 5.8547 19 6 0.1205 2.9720 7.8932 20 7 1.1081 2.8343 8.7507 21 14 -1.5548 3.5509 8.4830 22 1 -2.5724 2.5129 8.1790 23 1 -1.5098 3.7848 9.9488 24 1 -1.9140 4.8143 7.7903 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.5951 1.9851 -0.8341 31 1 1.7631 1.9258 0.9369 32 1 3.1302 0.5764 -2.0313 33 1 4.0613 2.0985 -2.0712 34 1 5.0860 -0.6115 -1.9531 35 1 6.0210 0.9143 -1.9541 36 1 5.8951 -0.8203 0.2335 37 1 6.2095 0.9385 0.3818 38 1 4.6071 -0.0168 2.7448 39 1 4.9771 1.6366 2.1995 40 1 2.6498 2.1046 2.1507 41 1 3.2628 0.5797 4.5975 42 1 3.7458 2.2692 4.3135 43 1 1.2244 3.1124 2.7839 44 1 0.2795 3.6213 4.2038 45 1 2.0043 4.0453 4.0838 46 1 0.8417 -0.0151 4.7664 47 1 -0.3991 1.2502 4.6030 48 1 0.5455 0.7412 3.1826 49 1 1.9369 1.2952 6.5911 50 1 2.4203 2.9844 6.3065 51 1 0.9666 3.0337 9.6894 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353129922.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:43 Heat of formation + Delta-G solvation = -11.039066 kcal Electronic energy + Delta-G solvation = -24064.172244 eV Core-core repulsion = 20997.692534 eV Total energy + Delta-G solvation = -3066.479710 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.82356 -37.38595 -34.40243 -34.16710 -32.17596 -30.74563 -29.61770 -26.92915 -26.29583 -25.69759 -25.29967 -23.68473 -22.44447 -21.76527 -20.92487 -19.40492 -17.79353 -16.75192 -16.18382 -15.74778 -15.18425 -14.78829 -14.62533 -14.29877 -13.92114 -13.71329 -13.42451 -13.26423 -12.85402 -12.65794 -12.52227 -12.31372 -11.96315 -11.79962 -11.64493 -11.52837 -11.35099 -11.30343 -11.14156 -10.97302 -10.92395 -10.80892 -10.74628 -10.55796 -10.44216 -10.25063 -10.16078 -10.05134 -9.62677 -8.95930 -8.79010 -8.35135 -8.28044 -7.92812 -5.92750 -3.92720 3.36805 3.41351 3.43562 3.95719 4.32983 4.51757 4.58276 4.76997 4.81833 4.99940 5.05294 5.22663 5.31904 5.36364 5.38917 5.42947 5.55366 5.60265 5.61327 5.66651 5.77711 5.80675 5.83194 5.83919 5.88529 5.97801 6.00129 6.03522 6.10564 6.16488 6.30787 6.34669 6.38782 6.42307 6.59827 6.72167 6.84842 6.87442 6.91161 7.05282 7.26224 7.30176 7.31604 7.50987 7.74168 7.82579 7.91642 8.07897 8.52527 9.12589 9.69803 11.18936 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.027496 B = 0.003714 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.079332 B = 7536.836133 C = 8124.406429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.153 4.153 3 C 0.044 3.956 4 N -0.513 5.513 5 C 0.034 3.966 6 C -0.130 4.130 7 C -0.121 4.121 8 C 0.060 3.940 9 H 0.072 0.928 10 C 0.074 3.926 11 N -0.687 5.687 12 C 0.068 3.932 13 C -0.057 4.057 14 C -0.128 4.128 15 C -0.115 4.115 16 C 0.034 3.966 17 C -0.506 4.506 18 H 0.058 0.942 19 C 0.055 3.945 20 N -0.898 5.898 21 Si 0.887 3.113 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.278 1.278 25 H 0.049 0.951 26 H 0.046 0.954 27 H 0.062 0.938 28 H 0.083 0.917 29 H 0.048 0.952 30 H 0.061 0.939 31 H 0.096 0.904 32 H 0.044 0.956 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.030 0.970 40 H 0.345 0.655 41 H 0.063 0.937 42 H 0.021 0.979 43 H 0.031 0.969 44 H 0.063 0.937 45 H 0.040 0.960 46 H 0.038 0.962 47 H 0.052 0.948 48 H 0.042 0.958 49 H 0.014 0.986 50 H 0.012 0.988 51 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.054 -5.687 -20.519 22.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.192 4.192 3 C -0.085 4.085 4 N -0.236 5.236 5 C -0.095 4.095 6 C -0.168 4.168 7 C -0.160 4.160 8 C -0.048 4.048 9 H 0.090 0.910 10 C -0.057 4.057 11 N -0.322 5.322 12 C -0.061 4.061 13 C -0.057 4.057 14 C -0.185 4.185 15 C -0.172 4.172 16 C -0.003 4.003 17 C -0.545 4.545 18 H 0.076 0.924 19 C -0.146 4.146 20 N -0.538 5.538 21 Si 0.715 3.285 22 H -0.203 1.203 23 H -0.215 1.215 24 H -0.204 1.204 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.081 0.919 28 H 0.101 0.899 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.114 0.886 32 H 0.062 0.938 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.048 0.952 40 H 0.169 0.831 41 H 0.081 0.919 42 H 0.039 0.961 43 H 0.050 0.950 44 H 0.082 0.918 45 H 0.059 0.941 46 H 0.057 0.943 47 H 0.071 0.929 48 H 0.061 0.939 49 H 0.032 0.968 50 H 0.030 0.970 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 6.017 -5.753 -20.106 21.761 hybrid contribution -0.662 0.360 0.254 0.795 sum 5.356 -5.393 -19.852 21.257 Atomic orbital electron populations 1.21677 0.95609 1.01367 1.01828 1.22098 0.96503 0.98629 1.01946 1.22542 0.86903 0.96157 1.02878 1.64916 1.09165 1.44197 1.05370 1.22839 0.96089 0.99323 0.91205 1.22362 0.97575 0.99859 0.96981 1.22526 0.97034 1.01767 0.94630 1.23021 0.94228 0.94173 0.93396 0.91036 1.21817 0.91408 0.99268 0.93171 1.60886 1.26411 1.39841 1.05063 1.22104 0.97792 0.99238 0.86935 1.20604 0.92304 0.94282 0.98554 1.21773 1.02212 0.97340 0.97209 1.21594 0.98932 0.97570 0.99097 1.19110 0.96969 0.96602 0.87649 1.21208 0.96724 1.43791 0.92731 0.92381 1.25012 0.96415 0.96035 0.97120 1.69956 1.31306 1.49683 1.02864 0.86738 0.84938 0.79250 0.77538 1.20341 1.21476 1.20363 0.93188 0.93481 0.91884 0.89857 0.93380 0.92005 0.88649 0.93812 0.90787 0.91824 0.91278 0.91254 0.90850 0.91256 0.95152 0.83141 0.91853 0.96078 0.94959 0.91820 0.94119 0.94313 0.92862 0.93868 0.96769 0.96977 0.93148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.91 37.16 0.37 -1.16 16 2 C -0.15 -1.64 4.65 -26.73 -0.12 -1.76 16 3 C 0.04 0.49 4.65 -3.83 -0.02 0.47 16 4 N -0.51 -5.68 5.06 -222.61 -1.13 -6.81 16 5 C 0.03 0.31 6.40 -2.75 -0.02 0.30 16 6 C -0.13 -1.07 6.93 -25.38 -0.18 -1.24 16 7 C -0.12 -1.11 6.50 -24.87 -0.16 -1.27 16 8 C 0.06 0.65 2.34 -65.78 -0.15 0.50 16 9 H 0.07 0.82 5.31 -51.93 -0.28 0.54 16 10 C 0.07 0.93 5.58 -3.82 -0.02 0.91 16 11 N -0.69 -9.88 4.57 -113.78 -0.52 -10.40 16 12 C 0.07 1.19 4.62 -3.82 -0.02 1.17 16 13 C -0.06 -1.14 0.60 -154.51 -0.09 -1.23 16 14 C -0.13 -2.41 7.89 37.16 0.29 -2.12 16 15 C -0.11 -2.20 8.06 37.16 0.30 -1.90 16 16 C 0.03 0.87 4.04 -27.89 -0.11 0.76 16 17 C -0.51 -13.92 7.65 -34.44 -0.26 -14.19 16 18 H 0.06 1.55 5.68 -52.48 -0.30 1.25 16 19 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 20 N -0.90 -27.07 13.29 55.43 0.74 -26.33 16 21 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.08 1.02 6.26 -51.93 -0.32 0.70 16 29 H 0.05 0.49 6.86 -51.93 -0.36 0.13 16 30 H 0.06 0.65 8.00 -51.92 -0.42 0.24 16 31 H 0.10 1.21 4.80 -51.93 -0.25 0.96 16 32 H 0.04 0.40 6.59 -51.93 -0.34 0.06 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.70 7.94 -51.93 -0.41 0.29 16 38 H 0.07 0.87 8.08 -51.93 -0.42 0.45 16 39 H 0.03 0.40 7.98 -51.93 -0.41 -0.01 16 40 H 0.35 5.03 3.81 -39.29 -0.15 4.88 16 41 H 0.06 1.14 8.13 -51.93 -0.42 0.72 16 42 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.03 0.52 6.25 -51.93 -0.32 0.19 16 44 H 0.06 1.29 6.62 -51.93 -0.34 0.95 16 45 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 47 H 0.05 1.10 6.62 -51.93 -0.34 0.75 16 48 H 0.04 0.73 7.60 -51.93 -0.39 0.34 16 49 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 50 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 51 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 371.57 15.07 5.60 5.60 Total: -1.00 -28.50 371.57 -10.32 -38.82 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -9.69 Total: 1.73 kcal Atomic # 6 Polarization: -19.02 SS G_CDS: -0.30 Total: -19.31 kcal Atomic # 7 Polarization: -42.63 SS G_CDS: -0.91 Total: -43.54 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -28.50 -10.32 -38.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353129922.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.780 kcal (2) G-P(sol) polarization free energy of solvation -28.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds