Wall clock time and date at job start Tue Mar 31 2020 05:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 109.46880 * 2 1 4 4 N 1.46903 * 109.47102 * 180.02562 * 3 2 1 5 5 C 1.48532 * 111.00021 * 52.60171 * 4 3 2 6 6 C 1.54937 * 103.22371 * 159.72420 * 5 4 3 7 7 C 1.54598 * 102.92332 * 322.58532 * 6 5 4 8 8 C 1.47898 * 110.99955 * 170.00170 * 4 3 2 9 9 H 1.08999 * 110.08263 * 333.59756 * 8 4 3 10 10 C 1.53007 * 109.91937 * 94.80190 * 8 4 3 11 11 N 1.46898 * 109.46764 * 304.04121 * 10 8 4 12 12 C 1.46906 * 110.99888 * 180.02562 * 11 10 8 13 13 C 1.52999 * 109.46897 * 180.02562 * 12 11 10 14 14 C 1.52997 * 109.47317 * 60.00033 * 13 12 11 15 15 C 1.52997 * 109.47269 * 299.99689 * 13 12 11 16 16 C 1.53006 * 109.46623 * 179.97438 * 13 12 11 17 17 C 1.50699 * 109.46866 * 179.97438 * 16 13 12 18 18 H 1.08003 * 119.99962 * 359.97438 * 17 16 13 19 19 C 1.37874 * 120.00270 * 180.02562 * 17 16 13 20 20 N 1.31522 * 119.99834 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 120.00496 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47325 * 59.99531 * 21 19 17 23 23 H 1.48496 * 109.47425 * 179.97438 * 21 19 17 24 24 H 1.48505 * 109.47183 * 299.99726 * 21 19 17 25 25 H 1.09002 * 109.46831 * 299.99734 * 1 2 3 26 26 H 1.08992 * 109.47106 * 59.99948 * 1 2 3 27 27 H 1.09004 * 109.46492 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46831 * 240.00266 * 2 1 3 29 29 H 1.08992 * 109.47106 * 120.00052 * 2 1 3 30 30 H 1.09002 * 109.47172 * 60.00474 * 3 2 1 31 31 H 1.09000 * 109.47559 * 300.00086 * 3 2 1 32 32 H 1.08990 * 110.66709 * 41.28861 * 5 4 3 33 33 H 1.09001 * 110.66872 * 278.15589 * 5 4 3 34 34 H 1.09005 * 110.72265 * 204.22475 * 6 5 4 35 35 H 1.09000 * 110.87930 * 81.01372 * 6 5 4 36 36 H 1.08999 * 110.30743 * 263.04100 * 7 6 5 37 37 H 1.09001 * 110.38959 * 140.91674 * 7 6 5 38 38 H 1.08997 * 109.46954 * 184.04184 * 10 8 4 39 39 H 1.09004 * 109.47056 * 64.03886 * 10 8 4 40 40 H 1.00896 * 111.00084 * 303.95493 * 11 10 8 41 41 H 1.09000 * 109.47033 * 59.99886 * 12 11 10 42 42 H 1.09001 * 109.46544 * 299.99942 * 12 11 10 43 43 H 1.09001 * 109.46832 * 179.97438 * 14 13 12 44 44 H 1.09002 * 109.47153 * 299.99641 * 14 13 12 45 45 H 1.08996 * 109.46952 * 59.99813 * 14 13 12 46 46 H 1.09000 * 109.47140 * 300.00547 * 15 13 12 47 47 H 1.09001 * 109.47230 * 59.99691 * 15 13 12 48 48 H 1.09001 * 109.47375 * 180.02562 * 15 13 12 49 49 H 1.08993 * 109.46955 * 300.00075 * 16 13 12 50 50 H 1.09000 * 109.47050 * 59.99904 * 16 13 12 51 51 H 0.96992 * 120.00032 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 -0.0006 5 6 4.0409 0.6005 -1.1026 6 6 5.4887 1.1228 -1.2806 7 6 5.3378 2.6444 -1.0523 8 6 4.0389 2.8024 -0.2404 9 1 3.3167 3.3911 -0.8060 10 6 4.3387 3.4878 1.0943 11 7 3.1265 3.4951 1.9241 12 6 3.3770 4.1475 3.2163 13 6 2.0947 4.1351 4.0508 14 6 1.6536 2.6892 4.2866 15 6 0.9928 4.8892 3.3039 16 6 2.3558 4.8141 5.3969 17 6 1.0927 4.8025 6.2187 18 1 0.1935 4.3559 5.8206 19 6 1.0846 5.3628 7.4784 20 7 2.1794 5.9071 7.9631 21 14 -0.4809 5.3478 8.4974 22 1 -0.9091 3.9445 8.7263 23 1 -0.2276 6.0069 9.8038 24 1 -1.5505 6.0797 7.7724 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3632 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9564 -0.8900 32 1 3.4630 0.7503 -2.0144 33 1 4.0439 -0.4512 -0.8161 34 1 5.8515 0.9180 -2.2879 35 1 6.1538 0.6852 -0.5362 36 1 5.2529 3.1636 -2.0069 37 1 6.1865 3.0296 -0.4870 38 1 4.6603 4.5132 0.9120 39 1 5.1300 2.9453 1.6117 40 1 2.3592 3.9360 1.4395 41 1 3.6917 5.1775 3.0483 42 1 4.1617 3.6099 3.7485 43 1 0.7403 2.6805 4.8815 44 1 1.4677 2.2051 3.3278 45 1 2.4386 2.1520 4.8187 46 1 1.3071 5.9193 3.1360 47 1 0.8069 4.4052 2.3451 48 1 0.0793 4.8808 3.8987 49 1 3.1407 4.2765 5.9287 50 1 2.6704 5.8442 5.2293 51 1 2.1739 6.3010 8.8494 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353129923.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:45 Heat of formation + Delta-G solvation = -22.816981 kcal Electronic energy + Delta-G solvation = -23686.301270 eV Core-core repulsion = 20619.310831 eV Total energy + Delta-G solvation = -3066.990439 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.49145 -37.39672 -34.76242 -34.00955 -32.15414 -30.76528 -29.59276 -26.92139 -26.26375 -25.70452 -25.23550 -23.68868 -22.35075 -21.58056 -20.33751 -20.15710 -17.75925 -16.26965 -16.21269 -15.87618 -15.25158 -14.87327 -14.63784 -14.35881 -14.00013 -13.63218 -13.39580 -13.08732 -12.88855 -12.85243 -12.50814 -12.21631 -11.98603 -11.93471 -11.61304 -11.55410 -11.31409 -11.29408 -11.09382 -10.91567 -10.83207 -10.79667 -10.71967 -10.58605 -10.51107 -10.42195 -10.18038 -10.06108 -9.60581 -8.94943 -8.78203 -8.30308 -8.27156 -7.88368 -5.91929 -3.91849 3.37379 3.41895 3.44190 3.92472 4.35972 4.52446 4.56597 4.78551 4.81995 5.03254 5.07390 5.08153 5.31838 5.34542 5.42306 5.43763 5.50906 5.59380 5.64087 5.68686 5.74420 5.75280 5.79408 5.82101 5.88585 5.92895 5.99045 6.04403 6.08455 6.16078 6.27744 6.32454 6.35182 6.42901 6.59585 6.75346 6.86684 6.90139 6.97447 7.17460 7.27876 7.33654 7.34309 7.53288 7.74734 7.80444 7.92511 8.08850 8.53527 9.13477 9.70609 11.19789 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.022376 B = 0.003688 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.060103 B = 7590.143128 C = 8469.977333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C 0.049 3.951 4 N -0.491 5.491 5 C 0.031 3.969 6 C -0.123 4.123 7 C -0.126 4.126 8 C 0.069 3.931 9 H 0.045 0.955 10 C 0.075 3.925 11 N -0.674 5.674 12 C 0.071 3.929 13 C -0.057 4.057 14 C -0.113 4.113 15 C -0.127 4.127 16 C 0.034 3.966 17 C -0.506 4.506 18 H 0.058 0.942 19 C 0.054 3.946 20 N -0.898 5.898 21 Si 0.887 3.113 22 H -0.277 1.277 23 H -0.289 1.289 24 H -0.278 1.278 25 H 0.060 0.940 26 H 0.048 0.952 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.071 0.929 30 H 0.099 0.901 31 H 0.021 0.979 32 H 0.037 0.963 33 H 0.079 0.921 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.063 0.937 37 H 0.073 0.927 38 H 0.023 0.977 39 H 0.075 0.925 40 H 0.330 0.670 41 H 0.019 0.981 42 H 0.065 0.935 43 H 0.051 0.949 44 H 0.043 0.957 45 H 0.038 0.962 46 H 0.038 0.962 47 H 0.031 0.969 48 H 0.063 0.937 49 H 0.015 0.985 50 H 0.011 0.989 51 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.320 -9.051 -20.462 22.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.079 4.079 4 N -0.215 5.215 5 C -0.097 4.097 6 C -0.161 4.161 7 C -0.165 4.165 8 C -0.040 4.040 9 H 0.064 0.936 10 C -0.055 4.055 11 N -0.305 5.305 12 C -0.058 4.058 13 C -0.058 4.058 14 C -0.170 4.170 15 C -0.185 4.185 16 C -0.003 4.003 17 C -0.544 4.544 18 H 0.076 0.924 19 C -0.146 4.146 20 N -0.538 5.538 21 Si 0.716 3.284 22 H -0.203 1.203 23 H -0.215 1.215 24 H -0.204 1.204 25 H 0.079 0.921 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.090 0.910 30 H 0.118 0.882 31 H 0.039 0.961 32 H 0.056 0.944 33 H 0.098 0.902 34 H 0.085 0.915 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.092 0.908 38 H 0.041 0.959 39 H 0.093 0.907 40 H 0.149 0.851 41 H 0.037 0.963 42 H 0.084 0.916 43 H 0.070 0.930 44 H 0.062 0.938 45 H 0.058 0.942 46 H 0.057 0.943 47 H 0.050 0.950 48 H 0.082 0.918 49 H 0.033 0.967 50 H 0.029 0.971 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 3.650 -9.780 -19.538 22.152 hybrid contribution -1.030 1.412 -0.377 1.788 sum 2.621 -8.368 -19.915 21.760 Atomic orbital electron populations 1.21730 0.95747 1.01467 1.01928 1.21565 0.95545 0.96772 1.02095 1.22448 0.87123 0.96912 1.01459 1.64666 1.08106 1.07172 1.41552 1.23249 0.94616 0.98802 0.93005 1.22459 0.97014 0.95236 1.01358 1.22417 0.97721 0.96809 0.99569 1.22418 0.95500 0.90699 0.95361 0.93647 1.21964 0.94115 0.96845 0.92581 1.60571 1.06227 1.59028 1.04722 1.22092 0.99073 0.95194 0.89405 1.20607 0.92307 0.96235 0.96605 1.21571 1.00737 0.95143 0.99590 1.21758 1.00165 0.98499 0.98063 1.19114 0.96903 0.94909 0.89420 1.21211 0.96740 1.36598 0.99874 0.92381 1.25013 0.95885 0.95761 0.97937 1.69960 1.27062 1.39273 1.17541 0.86735 0.83995 0.78173 0.79546 1.20312 1.21477 1.20399 0.92135 0.93247 0.92870 0.92774 0.91035 0.88248 0.96085 0.94438 0.90244 0.91542 0.90728 0.91792 0.90802 0.95860 0.90680 0.85119 0.96296 0.91641 0.92981 0.93787 0.94240 0.94260 0.94967 0.91828 0.96711 0.97050 0.93157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.91 37.16 0.37 -1.07 16 2 C -0.12 -1.26 5.59 -26.73 -0.15 -1.41 16 3 C 0.05 0.56 4.76 -3.82 -0.02 0.54 16 4 N -0.49 -5.69 4.90 -222.58 -1.09 -6.78 16 5 C 0.03 0.30 5.10 -1.90 -0.01 0.29 16 6 C -0.12 -1.05 7.06 -24.87 -0.18 -1.23 16 7 C -0.13 -1.15 6.57 -25.37 -0.17 -1.32 16 8 C 0.07 0.77 2.79 -66.64 -0.19 0.58 16 9 H 0.05 0.51 7.58 -51.93 -0.39 0.12 16 10 C 0.08 0.96 5.16 -3.82 -0.02 0.94 16 11 N -0.67 -9.88 4.03 -113.77 -0.46 -10.33 16 12 C 0.07 1.25 4.65 -3.82 -0.02 1.24 16 13 C -0.06 -1.15 0.60 -154.51 -0.09 -1.25 16 14 C -0.11 -2.23 8.06 37.16 0.30 -1.93 16 15 C -0.13 -2.39 7.89 37.16 0.29 -2.10 16 16 C 0.03 0.87 4.04 -27.88 -0.11 0.76 16 17 C -0.51 -13.99 7.65 -34.44 -0.26 -14.26 16 18 H 0.06 1.56 5.68 -52.48 -0.30 1.26 16 19 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 20 N -0.90 -27.17 13.29 55.43 0.74 -26.43 16 21 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.51 6.79 -51.93 -0.35 0.16 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.10 1.31 6.40 -51.93 -0.33 0.98 16 31 H 0.02 0.23 7.82 -51.93 -0.41 -0.17 16 32 H 0.04 0.35 8.00 -51.93 -0.42 -0.07 16 33 H 0.08 0.75 7.66 -51.93 -0.40 0.35 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.66 7.69 -51.93 -0.40 0.26 16 38 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.33 4.69 6.35 -39.29 -0.25 4.44 16 41 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 43 H 0.05 1.09 6.62 -51.93 -0.34 0.75 16 44 H 0.04 0.78 7.60 -51.93 -0.39 0.38 16 45 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.03 0.51 6.57 -51.93 -0.34 0.17 16 48 H 0.06 1.29 6.62 -51.93 -0.34 0.95 16 49 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 50 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 51 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 380.19 15.07 5.73 5.73 Total: -1.00 -29.00 380.19 -10.60 -39.60 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -10.14 Total: 0.18 kcal Atomic # 6 Polarization: -18.40 SS G_CDS: -0.35 Total: -18.75 kcal Atomic # 7 Polarization: -42.73 SS G_CDS: -0.81 Total: -43.55 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -29.00 -10.60 -39.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353129923.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.781 kcal (2) G-P(sol) polarization free energy of solvation -29.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds