Wall clock time and date at job start Tue Mar 31 2020 05:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47182 * 2 1 4 4 N 1.46893 * 109.47072 * 174.93782 * 3 2 1 5 5 C 1.46905 * 111.00294 * 199.22952 * 4 3 2 6 6 C 1.52993 * 109.47022 * 66.04654 * 5 4 3 7 7 C 1.53000 * 109.47460 * 180.02562 * 6 5 4 8 8 C 1.50698 * 109.47438 * 179.97438 * 7 6 5 9 9 H 1.07996 * 120.00018 * 0.02562 * 8 7 6 10 10 C 1.37874 * 120.00140 * 179.97438 * 8 7 6 11 11 N 1.31506 * 120.00163 * 180.02562 * 10 8 7 12 12 Si 1.86806 * 119.99784 * 0.02562 * 10 8 7 13 13 H 1.48505 * 109.47035 * 89.99910 * 12 10 8 14 14 H 1.48498 * 109.46749 * 209.99601 * 12 10 8 15 15 H 1.48501 * 109.47125 * 329.99855 * 12 10 8 16 16 C 1.46907 * 111.00082 * 75.27562 * 4 3 2 17 17 C 1.53000 * 109.47216 * 199.27790 * 16 4 3 18 18 N 1.46898 * 109.46610 * 174.39242 * 17 16 4 19 19 C 1.46845 * 111.00691 * 45.78710 * 18 17 16 20 20 C 1.53031 * 109.52665 * 185.83844 * 19 18 17 21 21 C 1.53118 * 109.27780 * 300.82151 * 20 19 18 22 22 C 1.53122 * 109.16312 * 57.65477 * 21 20 19 23 23 C 1.46853 * 110.99715 * 170.00320 * 18 17 16 24 24 H 1.09002 * 109.47288 * 299.99539 * 1 2 3 25 25 H 1.08999 * 109.47497 * 60.00143 * 1 2 3 26 26 H 1.09003 * 109.47488 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47020 * 239.99746 * 2 1 3 28 28 H 1.09008 * 109.47002 * 120.00155 * 2 1 3 29 29 H 1.09004 * 109.46912 * 54.94054 * 3 2 1 30 30 H 1.08996 * 109.47384 * 294.94217 * 3 2 1 31 31 H 1.08998 * 109.47516 * 186.04971 * 5 4 3 32 32 H 1.09007 * 109.46716 * 306.04857 * 5 4 3 33 33 H 1.08998 * 109.47234 * 300.00489 * 6 5 4 34 34 H 1.09000 * 109.47294 * 60.00119 * 6 5 4 35 35 H 1.08998 * 109.47168 * 300.00372 * 7 6 5 36 36 H 1.09007 * 109.46625 * 59.99990 * 7 6 5 37 37 H 0.97002 * 120.00423 * 180.02562 * 11 10 8 38 38 H 1.09003 * 109.46484 * 79.27605 * 16 4 3 39 39 H 1.08996 * 109.46834 * 319.28166 * 16 4 3 40 40 H 1.08994 * 109.47057 * 54.38989 * 17 16 4 41 41 H 1.09003 * 109.46752 * 294.38330 * 17 16 4 42 42 H 1.09005 * 109.46163 * 65.82298 * 19 18 17 43 43 H 1.08993 * 109.46005 * 305.85901 * 19 18 17 44 44 H 1.08999 * 109.50505 * 180.88149 * 20 19 18 45 45 H 1.09001 * 109.50451 * 60.76022 * 20 19 18 46 46 H 1.09010 * 109.52351 * 177.55655 * 21 20 19 47 47 H 1.08999 * 109.52671 * 297.74955 * 21 20 19 48 48 H 1.09010 * 109.50020 * 62.28296 * 22 21 20 49 49 H 1.09001 * 109.50602 * 182.39720 * 22 21 20 50 50 H 1.08990 * 109.46309 * 54.13883 * 23 18 17 51 51 H 1.09005 * 109.45978 * 294.16782 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5038 1.4442 0.1222 5 6 3.9926 2.7525 0.5778 6 6 3.5078 3.0088 2.0061 7 6 4.0163 4.3716 2.4806 8 6 3.5383 4.6243 3.8872 9 1 2.9328 3.8865 4.3925 10 6 3.8748 5.7970 4.5295 11 7 3.4581 6.0173 5.7572 12 14 4.9228 7.0729 3.6557 13 1 4.0429 8.0181 2.9224 14 1 5.7282 7.8201 4.6548 15 1 5.8302 6.3948 2.6955 16 6 4.1384 1.0574 -1.1450 17 6 5.5757 0.6057 -0.8786 18 7 6.1662 0.0930 -2.1222 19 6 5.8849 0.9923 -3.2484 20 6 6.3866 0.3578 -4.5474 21 6 7.8925 0.1033 -4.4370 22 6 8.1629 -0.7965 -3.2279 23 6 7.6096 -0.1285 -1.9671 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6045 1.9818 0.8412 30 1 1.7526 1.9295 -0.9318 31 1 5.0823 2.7607 0.5570 32 1 3.6107 3.5325 -0.0809 33 1 2.4181 3.0006 2.0270 34 1 3.8896 2.2288 2.6649 35 1 5.1060 4.3803 2.4597 36 1 3.6340 5.1514 1.8217 37 1 3.6945 6.8425 6.2090 38 1 4.1455 1.9109 -1.8231 39 1 3.5781 0.2390 -1.5969 40 1 5.5753 -0.1817 -0.1249 41 1 6.1619 1.4518 -0.5200 42 1 6.3927 1.9436 -3.0891 43 1 4.8105 1.1617 -3.3182 44 1 6.1918 1.0325 -5.3810 45 1 5.8693 -0.5869 -4.7145 46 1 8.2463 -0.3883 -5.3433 47 1 8.4138 1.0519 -4.3088 48 1 7.6733 -1.7595 -3.3743 49 1 9.2370 -0.9466 -3.1189 50 1 7.7877 -0.7732 -1.1066 51 1 8.1094 0.8280 -1.8139 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353173681.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:49 Heat of formation + Delta-G solvation = -22.264643 kcal Electronic energy + Delta-G solvation = -22950.055574 eV Core-core repulsion = 19883.089086 eV Total energy + Delta-G solvation = -3066.966488 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.44214 -37.92459 -34.27237 -34.08839 -32.74313 -31.46045 -31.03983 -28.58910 -27.14099 -25.25093 -24.09937 -23.17983 -22.13139 -21.37816 -20.32932 -19.95395 -19.68842 -16.71368 -16.54606 -15.63299 -15.20998 -14.99919 -14.94864 -14.58749 -14.51071 -14.13119 -13.94273 -13.66903 -13.44485 -13.13512 -13.03980 -12.58254 -12.33851 -12.22454 -11.91627 -11.80016 -11.58847 -11.51486 -11.40295 -11.26971 -10.94587 -10.93305 -10.86843 -10.58454 -10.55751 -10.44849 -10.38598 -9.91737 -9.61722 -9.53789 -9.14187 -8.51859 -8.43209 -8.09596 -6.02181 -3.99653 3.30919 3.38299 3.42112 3.59585 4.21279 4.46628 4.57642 4.61528 4.68724 4.91256 5.01606 5.05306 5.08844 5.18246 5.23942 5.28657 5.31765 5.38984 5.39881 5.46068 5.51003 5.58575 5.65356 5.66500 5.69377 5.70087 5.72903 5.79806 5.86249 5.91582 5.94908 5.96789 6.07437 6.08433 6.13007 6.20266 6.29022 6.35889 6.59168 6.61607 6.93048 6.95282 6.96175 7.29465 7.31624 7.41726 7.48950 7.82702 8.57495 9.03736 9.60655 11.11477 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.013121 B = 0.003723 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2133.434429 B = 7518.539675 C = 9135.738692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.117 4.117 3 C 0.051 3.949 4 N -0.538 5.538 5 C 0.053 3.947 6 C -0.097 4.097 7 C -0.013 4.013 8 C -0.517 4.517 9 H 0.072 0.928 10 C 0.065 3.935 11 N -0.905 5.905 12 Si 0.879 3.121 13 H -0.278 1.278 14 H -0.288 1.288 15 H -0.266 1.266 16 C 0.054 3.946 17 C 0.060 3.940 18 N -0.537 5.537 19 C 0.047 3.953 20 C -0.117 4.117 21 C -0.122 4.122 22 C -0.116 4.116 23 C 0.055 3.945 24 H 0.057 0.943 25 H 0.049 0.951 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.028 0.972 31 H 0.067 0.933 32 H 0.026 0.974 33 H 0.054 0.946 34 H 0.062 0.938 35 H 0.014 0.986 36 H 0.008 0.992 37 H 0.262 0.738 38 H 0.031 0.969 39 H 0.079 0.921 40 H 0.086 0.914 41 H 0.034 0.966 42 H 0.031 0.969 43 H 0.078 0.922 44 H 0.063 0.937 45 H 0.070 0.930 46 H 0.062 0.938 47 H 0.057 0.943 48 H 0.070 0.930 49 H 0.064 0.936 50 H 0.075 0.925 51 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.343 -13.753 -21.122 25.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.155 4.155 3 C -0.076 4.076 4 N -0.262 5.262 5 C -0.075 4.075 6 C -0.135 4.135 7 C -0.051 4.051 8 C -0.555 4.555 9 H 0.090 0.910 10 C -0.136 4.136 11 N -0.544 5.544 12 Si 0.707 3.293 13 H -0.204 1.204 14 H -0.214 1.214 15 H -0.191 1.191 16 C -0.074 4.074 17 C -0.067 4.067 18 N -0.262 5.262 19 C -0.081 4.081 20 C -0.154 4.154 21 C -0.160 4.160 22 C -0.154 4.154 23 C -0.073 4.073 24 H 0.076 0.924 25 H 0.068 0.932 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.090 0.910 29 H 0.103 0.897 30 H 0.046 0.954 31 H 0.086 0.914 32 H 0.044 0.956 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.032 0.968 36 H 0.026 0.974 37 H 0.072 0.928 38 H 0.049 0.951 39 H 0.097 0.903 40 H 0.104 0.896 41 H 0.053 0.947 42 H 0.049 0.951 43 H 0.097 0.903 44 H 0.082 0.918 45 H 0.089 0.911 46 H 0.080 0.920 47 H 0.076 0.924 48 H 0.089 0.911 49 H 0.083 0.917 50 H 0.094 0.906 51 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 4.268 -14.414 -20.721 25.599 hybrid contribution 0.730 2.272 -0.737 2.498 sum 4.998 -12.141 -21.458 25.156 Atomic orbital electron populations 1.21743 0.95969 1.01408 1.01800 1.21498 0.94984 0.96664 1.02358 1.22221 0.87518 0.97093 1.00815 1.61916 1.05664 1.30243 1.28345 1.22350 0.99762 0.87528 0.97814 1.21489 1.00064 0.99290 0.92642 1.19551 0.96173 0.92464 0.96908 1.21148 1.32832 1.04163 0.97379 0.90996 1.25035 0.95705 0.98094 0.94724 1.69914 1.46331 1.26023 1.12137 0.86783 0.81070 0.81796 0.79650 1.20380 1.21392 1.19111 1.22205 0.94977 0.99455 0.90770 1.22093 0.94204 0.99199 0.91241 1.61997 1.12490 1.47283 1.04450 1.22202 1.01128 0.93718 0.91011 1.21587 0.95894 1.01398 0.96556 1.21587 0.96412 0.99747 0.98233 1.21578 1.00139 0.99449 0.94203 1.22074 0.87381 0.99402 0.98414 0.92428 0.93162 0.92832 0.92555 0.91035 0.89733 0.95354 0.91412 0.95573 0.92784 0.91944 0.96764 0.97409 0.92789 0.95078 0.90264 0.89589 0.94732 0.95120 0.90321 0.91795 0.91137 0.91967 0.92397 0.91106 0.91688 0.90627 0.94986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.91 37.16 0.37 -1.18 16 2 C -0.12 -1.36 5.97 -26.73 -0.16 -1.52 16 3 C 0.05 0.69 4.83 -3.83 -0.02 0.67 16 4 N -0.54 -7.76 4.37 -234.63 -1.03 -8.78 16 5 C 0.05 0.88 4.79 -3.82 -0.02 0.86 16 6 C -0.10 -1.96 5.12 -26.73 -0.14 -2.10 16 7 C -0.01 -0.32 4.04 -27.88 -0.11 -0.43 16 8 C -0.52 -15.01 9.66 -34.44 -0.33 -15.35 16 9 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 10 C 0.07 1.93 5.47 -17.82 -0.10 1.84 16 11 N -0.90 -28.32 13.96 55.43 0.77 -27.55 16 12 Si 0.88 22.06 27.47 -169.99 -4.67 17.40 16 13 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 14 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 15 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 16 C 0.05 0.67 3.82 -3.82 -0.01 0.65 16 17 C 0.06 0.73 5.29 -3.82 -0.02 0.71 16 18 N -0.54 -5.83 4.81 -234.68 -1.13 -6.96 16 19 C 0.05 0.47 4.86 -3.84 -0.02 0.45 16 20 C -0.12 -0.97 6.09 -26.65 -0.16 -1.13 16 21 C -0.12 -0.95 6.00 -26.61 -0.16 -1.11 16 22 C -0.12 -0.94 6.09 -26.65 -0.16 -1.10 16 23 C 0.06 0.54 5.42 -3.83 -0.02 0.52 16 24 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.62 6.87 -51.93 -0.36 0.26 16 28 H 0.07 0.90 8.14 -51.92 -0.42 0.48 16 29 H 0.08 1.26 5.89 -51.93 -0.31 0.96 16 30 H 0.03 0.37 8.01 -51.93 -0.42 -0.05 16 31 H 0.07 1.13 6.70 -51.93 -0.35 0.78 16 32 H 0.03 0.44 8.12 -51.93 -0.42 0.01 16 33 H 0.05 1.09 6.25 -51.93 -0.32 0.77 16 34 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.01 0.34 7.20 -51.93 -0.37 -0.03 16 36 H 0.01 0.18 7.57 -51.93 -0.39 -0.21 16 37 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 38 H 0.03 0.39 6.45 -51.93 -0.33 0.05 16 39 H 0.08 0.94 6.53 -51.93 -0.34 0.60 16 40 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.03 0.46 6.89 -51.93 -0.36 0.10 16 42 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.08 0.78 5.94 -51.93 -0.31 0.47 16 44 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 45 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 47 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 48 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 49 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 50 H 0.08 0.72 8.12 -51.93 -0.42 0.30 16 51 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 379.55 15.07 5.72 5.72 Total: -1.00 -30.19 379.55 -11.60 -41.79 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -10.21 Total: -3.42 kcal Atomic # 6 Polarization: -17.14 SS G_CDS: -1.07 Total: -18.20 kcal Atomic # 7 Polarization: -41.90 SS G_CDS: -1.38 Total: -43.28 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.67 Total: 17.40 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -30.19 -11.60 -41.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353173681.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.524 kcal (2) G-P(sol) polarization free energy of solvation -30.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds