Wall clock time and date at job start Tue Mar 31 2020 05:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34779 * 120.00066 * 2 1 4 4 O 1.21286 * 119.99572 * 0.02562 * 3 2 1 5 5 C 1.50692 * 120.00277 * 179.97438 * 3 2 1 6 6 C 1.53010 * 109.47280 * 179.97438 * 5 3 2 7 7 C 1.52996 * 109.47211 * 174.86145 * 6 5 3 8 8 H 1.09000 * 109.46429 * 305.27256 * 7 6 5 9 9 C 1.53033 * 109.45677 * 65.24387 * 7 6 5 10 10 C 1.53112 * 109.27989 * 179.18768 * 9 7 6 11 11 C 1.53113 * 109.16474 * 302.34852 * 10 9 7 12 12 C 1.53039 * 109.27900 * 57.65202 * 11 10 9 13 13 N 1.46848 * 109.46058 * 185.29503 * 7 6 5 14 14 C 1.46897 * 111.00040 * 54.15603 * 13 7 6 15 15 C 1.53003 * 109.47050 * 175.59359 * 14 13 7 16 16 C 1.52990 * 109.47282 * 179.97438 * 15 14 13 17 17 C 1.50699 * 109.47461 * 179.97438 * 16 15 14 18 18 H 1.08003 * 119.99915 * 359.97438 * 17 16 15 19 19 C 1.37880 * 120.00261 * 180.02562 * 17 16 15 20 20 N 1.31513 * 119.99991 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00132 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47235 * 89.99498 * 21 19 17 23 23 H 1.48499 * 109.47194 * 210.00103 * 21 19 17 24 24 H 1.48507 * 109.46689 * 329.99843 * 21 19 17 25 25 H 1.08993 * 109.47209 * 60.00461 * 1 2 3 26 26 H 1.09006 * 109.46774 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47175 * 299.99752 * 1 2 3 28 28 H 0.97001 * 120.00362 * 179.97438 * 2 1 3 29 29 H 1.08998 * 109.47410 * 60.00331 * 5 3 2 30 30 H 1.08993 * 109.47722 * 300.00295 * 5 3 2 31 31 H 1.09003 * 109.46425 * 54.86195 * 6 5 3 32 32 H 1.08995 * 109.46830 * 294.86469 * 6 5 3 33 33 H 1.09005 * 109.50476 * 299.13442 * 9 7 6 34 34 H 1.09000 * 109.49864 * 59.20667 * 9 7 6 35 35 H 1.09005 * 109.52071 * 62.25526 * 10 9 7 36 36 H 1.09001 * 109.52451 * 182.37435 * 10 9 7 37 37 H 1.09002 * 109.50813 * 177.59457 * 11 10 9 38 38 H 1.09001 * 109.49880 * 297.67540 * 11 10 9 39 39 H 1.09000 * 109.46186 * 180.80889 * 12 11 10 40 40 H 1.09002 * 109.46000 * 60.83797 * 12 11 10 41 41 H 1.08997 * 109.47201 * 55.59010 * 14 13 7 42 42 H 1.09001 * 109.47105 * 295.58568 * 14 13 7 43 43 H 1.09001 * 109.46521 * 299.99567 * 15 14 13 44 44 H 1.08997 * 109.47602 * 59.99259 * 15 14 13 45 45 H 1.08998 * 109.47239 * 299.99862 * 16 15 14 46 46 H 1.09009 * 109.47591 * 59.99469 * 16 15 14 47 47 H 0.96996 * 120.00126 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5324 2.2175 0.0005 5 6 3.6458 1.1673 0.0006 6 6 4.1558 2.6099 -0.0002 7 6 5.6802 2.6119 0.1296 8 1 5.9702 2.0448 1.0141 9 6 6.2985 1.9687 -1.1137 10 6 7.8244 1.9911 -0.9888 11 6 8.2928 3.4378 -0.8095 12 6 7.6167 4.0385 0.4250 13 7 6.1586 3.9945 0.2563 14 6 5.4798 4.6874 1.3595 15 6 6.0803 6.0843 1.5306 16 6 5.3730 6.8062 2.6791 17 6 5.9647 8.1818 2.8482 18 1 6.7656 8.5083 2.2013 19 6 5.4845 9.0232 3.8293 20 7 4.5096 8.6254 4.6173 21 14 6.2176 10.7286 4.0383 22 1 5.4721 11.6949 3.1924 23 1 6.1194 11.1385 5.4622 24 1 7.6442 10.7079 3.6263 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.9500 -0.8400 0.0004 29 1 4.0095 0.6533 -0.8891 30 1 4.0089 0.6537 0.8907 31 1 3.7189 3.1500 0.8397 32 1 3.8699 3.0958 -0.9330 33 1 5.9555 0.9375 -1.1988 34 1 5.9971 2.5267 -2.0002 35 1 8.1278 1.4002 -0.1245 36 1 8.2700 1.5721 -1.8910 37 1 9.3746 3.4564 -0.6772 38 1 8.0239 4.0192 -1.6915 39 1 7.9371 5.0732 0.5472 40 1 7.8976 3.4647 1.3082 41 1 5.6115 4.1200 2.2807 42 1 4.4168 4.7741 1.1348 43 1 7.1433 5.9977 1.7553 44 1 5.9487 6.6518 0.6094 45 1 4.3100 6.8928 2.4541 46 1 5.5041 6.2389 3.6007 47 1 4.1720 9.2172 5.3077 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353175658.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:44 Heat of formation + Delta-G solvation = -63.875678 kcal Electronic energy + Delta-G solvation = -22627.667111 eV Core-core repulsion = 19423.063139 eV Total energy + Delta-G solvation = -3204.603972 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.98143 -39.08845 -34.84215 -34.74717 -33.94026 -32.85934 -30.64864 -29.87322 -27.23106 -26.47417 -24.39494 -24.15508 -22.09492 -21.01053 -20.35100 -19.79545 -19.44381 -17.45893 -16.29078 -16.08294 -15.89308 -15.45941 -14.87474 -14.54984 -14.40589 -14.35990 -14.04427 -13.67812 -13.36777 -13.23156 -12.98237 -12.57171 -12.50014 -12.13689 -11.93364 -11.73036 -11.53744 -11.41342 -11.22884 -10.89482 -10.80710 -10.62351 -10.60278 -10.47989 -10.09205 -10.02456 -9.90298 -9.47455 -9.34953 -9.24038 -8.96199 -8.27220 -7.92143 -5.92575 -3.94509 2.53451 3.01892 3.36992 3.42669 3.46147 4.12718 4.52220 4.55460 4.76814 4.85536 4.93407 4.95500 5.04097 5.11704 5.24664 5.29025 5.42909 5.43579 5.45719 5.51860 5.58687 5.67555 5.70509 5.82981 5.90884 5.92714 5.97570 6.05154 6.14318 6.15821 6.21057 6.30628 6.35633 6.44524 6.51379 6.81140 6.89814 7.20224 7.24513 7.52589 7.52837 7.76537 7.92546 8.08394 8.08602 8.51519 9.12774 9.69001 11.18900 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.013440 B = 0.003750 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2082.891694 B = 7465.259788 C = 9365.063801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.742 5.742 3 C 0.508 3.492 4 O -0.530 6.530 5 C -0.138 4.138 6 C -0.103 4.103 7 C 0.086 3.914 8 H 0.036 0.964 9 C -0.112 4.112 10 C -0.120 4.120 11 C -0.117 4.117 12 C 0.050 3.950 13 N -0.533 5.533 14 C 0.053 3.947 15 C -0.109 4.109 16 C 0.022 3.978 17 C -0.517 4.517 18 H 0.054 0.946 19 C 0.055 3.945 20 N -0.896 5.896 21 Si 0.891 3.109 22 H -0.280 1.280 23 H -0.287 1.287 24 H -0.274 1.274 25 H 0.058 0.942 26 H 0.072 0.928 27 H 0.059 0.941 28 H 0.400 0.600 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.061 0.939 34 H 0.071 0.929 35 H 0.055 0.945 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.069 0.931 39 H 0.087 0.913 40 H 0.027 0.973 41 H 0.025 0.975 42 H 0.077 0.923 43 H 0.048 0.952 44 H 0.055 0.945 45 H 0.016 0.984 46 H 0.013 0.987 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.251 -22.558 -11.699 25.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.395 5.395 3 C 0.295 3.705 4 O -0.405 6.405 5 C -0.178 4.178 6 C -0.141 4.141 7 C -0.022 4.022 8 H 0.054 0.946 9 C -0.150 4.150 10 C -0.158 4.158 11 C -0.155 4.155 12 C -0.078 4.078 13 N -0.257 5.257 14 C -0.074 4.074 15 C -0.147 4.147 16 C -0.016 4.016 17 C -0.556 4.556 18 H 0.073 0.927 19 C -0.145 4.145 20 N -0.536 5.536 21 Si 0.719 3.281 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.199 1.199 25 H 0.077 0.923 26 H 0.091 0.909 27 H 0.078 0.922 28 H 0.233 0.767 29 H 0.112 0.888 30 H 0.110 0.890 31 H 0.098 0.902 32 H 0.096 0.904 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.106 0.894 40 H 0.045 0.955 41 H 0.043 0.957 42 H 0.095 0.905 43 H 0.067 0.933 44 H 0.074 0.926 45 H 0.035 0.965 46 H 0.031 0.969 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.429 -21.472 -11.980 24.592 hybrid contribution 0.671 0.015 1.043 1.240 sum 0.242 -21.458 -10.938 24.086 Atomic orbital electron populations 1.21516 0.79852 1.01952 1.02454 1.45867 1.07734 1.08830 1.77096 1.20888 0.90608 0.83468 0.75529 1.90760 1.70508 1.31194 1.48046 1.21707 0.91257 1.00720 1.04164 1.21482 0.93918 0.93942 1.04789 1.21600 0.94132 0.89663 0.96826 0.94644 1.21681 0.95105 0.99689 0.98513 1.21575 0.95955 0.97133 1.01134 1.21598 0.99030 0.95741 0.99103 1.22175 0.87852 1.01794 0.95948 1.61985 1.04714 1.13736 1.45294 1.22346 0.99142 0.95716 0.90147 1.21748 0.99176 0.92937 1.00838 1.19066 0.95777 0.94522 0.92207 1.21255 1.18779 0.99484 1.16044 0.92740 1.25031 0.95144 0.98421 0.95945 1.69971 1.26943 1.36466 1.20180 0.86609 0.79550 0.84766 0.77157 1.20665 1.21304 1.19927 0.92287 0.90877 0.92201 0.76653 0.88841 0.89049 0.90173 0.90423 0.92020 0.91053 0.92582 0.92231 0.91984 0.91191 0.89448 0.95464 0.95660 0.90516 0.93347 0.92585 0.96517 0.96902 0.93088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.64 10.70 59.84 0.64 1.28 16 2 N -0.74 -5.91 5.71 -67.09 -0.38 -6.29 16 3 C 0.51 5.90 7.83 -10.99 -0.09 5.81 16 4 O -0.53 -8.85 15.92 5.55 0.09 -8.76 16 5 C -0.14 -1.28 5.33 -27.88 -0.15 -1.43 16 6 C -0.10 -1.33 3.78 -26.73 -0.10 -1.43 16 7 C 0.09 1.09 1.90 -67.73 -0.13 0.96 16 8 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 9 C -0.11 -1.14 5.11 -26.66 -0.14 -1.28 16 10 C -0.12 -1.19 6.00 -26.62 -0.16 -1.35 16 11 C -0.12 -1.35 6.09 -26.65 -0.16 -1.51 16 12 C 0.05 0.72 5.02 -3.83 -0.02 0.70 16 13 N -0.53 -8.28 4.60 -226.69 -1.04 -9.33 16 14 C 0.05 0.99 4.45 -3.82 -0.02 0.97 16 15 C -0.11 -2.37 4.64 -26.73 -0.12 -2.49 16 16 C 0.02 0.59 4.97 -27.89 -0.14 0.45 16 17 C -0.52 -15.18 9.11 -34.44 -0.31 -15.49 16 18 H 0.05 1.55 7.74 -52.48 -0.41 1.15 16 19 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 20 N -0.90 -27.81 13.29 55.43 0.74 -27.07 16 21 Si 0.89 22.29 29.54 -169.99 -5.02 17.27 16 22 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 24 H -0.27 -6.70 7.11 56.52 0.40 -6.29 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.40 1.78 8.83 -40.82 -0.36 1.42 16 29 H 0.09 0.64 6.85 -51.93 -0.36 0.28 16 30 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.08 1.25 5.92 -51.93 -0.31 0.94 16 32 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.06 0.49 6.73 -51.93 -0.35 0.14 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.09 1.38 5.84 -51.93 -0.30 1.07 16 40 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.03 0.47 8.13 -51.93 -0.42 0.05 16 42 H 0.08 1.49 6.37 -51.93 -0.33 1.16 16 43 H 0.05 1.02 6.19 -51.93 -0.32 0.70 16 44 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 45 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 46 H 0.01 0.36 8.14 -51.92 -0.42 -0.06 16 47 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 363.81 15.07 5.48 5.48 Total: -1.00 -34.51 363.81 -9.77 -44.27 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -8.63 Total: -2.32 kcal Atomic # 6 Polarization: -12.26 SS G_CDS: -0.99 Total: -13.26 kcal Atomic # 7 Polarization: -42.00 SS G_CDS: -0.69 Total: -42.69 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: 0.09 Total: -8.76 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.51 -9.77 -44.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353175658.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.601 kcal (2) G-P(sol) polarization free energy of solvation -34.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds