Wall clock time and date at job start Tue Mar 31 2020 05:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34784 * 119.99798 * 2 1 4 4 O 1.21287 * 119.99732 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99852 * 180.02562 * 3 2 1 6 6 C 1.53001 * 109.46691 * 179.97438 * 5 3 2 7 7 C 1.53005 * 109.47050 * 185.10899 * 6 5 3 8 8 H 1.09003 * 109.45611 * 55.23208 * 7 6 5 9 9 C 1.53033 * 109.46240 * 295.25482 * 7 6 5 10 10 C 1.53121 * 109.27401 * 180.79968 * 9 7 6 11 11 C 1.53124 * 109.15789 * 57.65881 * 10 9 7 12 12 C 1.53030 * 109.27601 * 302.33641 * 11 10 9 13 13 N 1.46845 * 109.46168 * 175.20805 * 7 6 5 14 14 C 1.46902 * 110.99270 * 305.86107 * 13 7 6 15 15 C 1.52998 * 109.47241 * 302.23415 * 14 13 7 16 16 C 1.52998 * 109.46844 * 178.67370 * 15 14 13 17 17 C 1.50704 * 109.47075 * 179.97438 * 16 15 14 18 18 H 1.07996 * 119.99707 * 0.02562 * 17 16 15 19 19 C 1.37878 * 120.00027 * 180.02562 * 17 16 15 20 20 N 1.31512 * 119.99896 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 119.99887 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47368 * 90.00070 * 21 19 17 23 23 H 1.48498 * 109.47129 * 209.99856 * 21 19 17 24 24 H 1.48504 * 109.47285 * 329.99961 * 21 19 17 25 25 H 1.09004 * 109.46811 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47325 * 300.00120 * 1 2 3 27 27 H 1.08997 * 109.47627 * 60.00739 * 1 2 3 28 28 H 0.97001 * 120.00384 * 179.97438 * 2 1 3 29 29 H 1.08997 * 109.47449 * 59.99732 * 5 3 2 30 30 H 1.08994 * 109.46769 * 299.98872 * 5 3 2 31 31 H 1.08998 * 109.46930 * 65.11472 * 6 5 3 32 32 H 1.08996 * 109.47327 * 305.11295 * 6 5 3 33 33 H 1.09005 * 109.50441 * 60.86161 * 9 7 6 34 34 H 1.08996 * 109.53597 * 300.76275 * 9 7 6 35 35 H 1.08995 * 109.53066 * 297.74916 * 10 9 7 36 36 H 1.09007 * 109.52036 * 177.55837 * 10 9 7 37 37 H 1.09008 * 109.49635 * 182.40233 * 11 10 9 38 38 H 1.09000 * 109.50656 * 62.28443 * 11 10 9 39 39 H 1.09001 * 109.46210 * 179.19697 * 12 11 10 40 40 H 1.08996 * 109.46851 * 299.18034 * 12 11 10 41 41 H 1.08996 * 109.46622 * 62.23641 * 14 13 7 42 42 H 1.09002 * 109.46642 * 182.23181 * 14 13 7 43 43 H 1.08995 * 109.47196 * 298.67416 * 15 14 13 44 44 H 1.09000 * 109.46955 * 58.67652 * 15 14 13 45 45 H 1.08995 * 109.47262 * 300.00006 * 16 15 14 46 46 H 1.09000 * 109.47114 * 60.00379 * 16 15 14 47 47 H 0.97002 * 120.00012 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5323 2.2176 -0.0005 5 6 3.6459 1.1673 -0.0006 6 6 4.1557 2.6099 -0.0011 7 6 5.6803 2.6118 -0.1302 8 1 5.9702 2.0513 -1.0190 9 6 6.2977 1.9587 1.1085 10 6 7.8237 1.9810 0.9840 11 6 8.2931 3.4288 0.8159 12 6 7.6179 4.0392 -0.4142 13 7 6.1597 3.9950 -0.2460 14 6 5.4816 4.6968 -1.3440 15 6 5.7116 3.9389 -2.6529 16 6 4.9779 4.6517 -3.7906 17 6 5.2050 3.9054 -5.0801 18 1 5.8116 3.0119 -5.0873 19 6 4.6383 4.3634 -6.2507 20 7 3.8993 5.4512 -6.2418 21 14 4.9193 3.4381 -7.8488 22 1 3.8543 2.4180 -8.0240 23 1 4.8827 4.3921 -8.9862 24 1 6.2441 2.7684 -7.8068 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5137 -0.8900 28 1 1.9500 -0.8400 0.0004 29 1 4.0089 0.6537 -0.8908 30 1 4.0095 0.6535 0.8892 31 1 3.8694 3.0967 0.9311 32 1 3.7192 3.1492 -0.8417 33 1 5.9539 0.9272 1.1856 34 1 5.9971 2.5101 1.9993 35 1 8.1270 1.3965 0.1154 36 1 8.2688 1.5559 1.8837 37 1 9.3751 3.4474 0.6840 38 1 8.0239 4.0039 1.7019 39 1 7.9391 5.0745 -0.5286 40 1 7.8984 3.4718 -1.3016 41 1 4.4127 4.7483 -1.1369 42 1 5.8834 5.7061 -1.4330 43 1 6.7789 3.9078 -2.8720 44 1 5.3309 2.9221 -2.5557 45 1 3.9107 4.6827 -3.5715 46 1 5.3587 5.6684 -3.8878 47 1 3.5003 5.7732 -7.0652 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353175661.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:46 Heat of formation + Delta-G solvation = -64.962624 kcal Electronic energy + Delta-G solvation = -23172.588753 eV Core-core repulsion = 19967.937647 eV Total energy + Delta-G solvation = -3204.651106 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.91226 -39.09483 -34.73102 -34.65441 -33.80126 -32.86550 -30.52045 -29.79060 -27.12577 -26.40683 -24.40749 -23.93491 -22.12889 -21.02044 -20.64196 -20.20829 -18.66393 -17.28940 -16.30070 -15.94604 -15.77461 -15.34332 -15.04423 -14.60312 -14.46638 -14.10884 -13.84773 -13.59043 -13.46275 -12.92191 -12.80581 -12.43920 -12.40469 -12.15847 -11.88889 -11.80238 -11.60680 -11.15377 -11.10635 -10.87309 -10.80149 -10.71446 -10.58776 -10.49076 -10.19234 -9.93922 -9.79857 -9.51233 -9.34411 -9.19488 -9.12560 -8.30855 -7.74350 -5.95525 -3.98041 2.70020 3.17701 3.32644 3.38787 3.41789 4.21758 4.48358 4.70398 4.84778 4.95832 4.99495 5.08192 5.14846 5.23528 5.33230 5.39632 5.40253 5.55042 5.60447 5.62820 5.69914 5.76263 5.78743 5.80721 5.95922 5.99006 6.04151 6.10028 6.15646 6.23140 6.29803 6.34154 6.36972 6.52073 6.55263 6.71187 6.92063 7.12960 7.39980 7.51441 7.54910 7.72204 7.88630 8.04741 8.24400 8.47633 9.08948 9.65506 11.15547 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.009594 B = 0.005459 C = 0.003835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2917.779125 B = 5128.149755 C = 7299.105927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.742 5.742 3 C 0.511 3.489 4 O -0.531 6.531 5 C -0.138 4.138 6 C -0.102 4.102 7 C 0.084 3.916 8 H 0.047 0.953 9 C -0.112 4.112 10 C -0.121 4.121 11 C -0.116 4.116 12 C 0.053 3.947 13 N -0.533 5.533 14 C 0.048 3.952 15 C -0.142 4.142 16 C 0.025 3.975 17 C -0.519 4.519 18 H 0.051 0.949 19 C 0.057 3.943 20 N -0.894 5.894 21 Si 0.889 3.111 22 H -0.281 1.281 23 H -0.286 1.286 24 H -0.275 1.275 25 H 0.072 0.928 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.400 0.600 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.072 0.928 32 H 0.084 0.916 33 H 0.062 0.938 34 H 0.068 0.932 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.061 0.939 38 H 0.067 0.933 39 H 0.071 0.929 40 H 0.037 0.963 41 H 0.077 0.923 42 H 0.068 0.932 43 H 0.045 0.955 44 H 0.048 0.952 45 H 0.016 0.984 46 H 0.015 0.985 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.124 -12.156 17.005 21.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.395 5.395 3 C 0.297 3.703 4 O -0.407 6.407 5 C -0.179 4.179 6 C -0.140 4.140 7 C -0.024 4.024 8 H 0.065 0.935 9 C -0.150 4.150 10 C -0.159 4.159 11 C -0.153 4.153 12 C -0.075 4.075 13 N -0.257 5.257 14 C -0.079 4.079 15 C -0.181 4.181 16 C -0.013 4.013 17 C -0.557 4.557 18 H 0.070 0.930 19 C -0.144 4.144 20 N -0.534 5.534 21 Si 0.717 3.283 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.200 1.200 25 H 0.091 0.909 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.233 0.767 29 H 0.112 0.888 30 H 0.110 0.890 31 H 0.091 0.909 32 H 0.103 0.897 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.090 0.910 40 H 0.055 0.945 41 H 0.096 0.904 42 H 0.087 0.913 43 H 0.064 0.936 44 H 0.067 0.933 45 H 0.034 0.966 46 H 0.033 0.967 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.456 -11.003 17.340 20.588 hybrid contribution 0.464 -1.379 -1.862 2.363 sum 1.920 -12.383 15.478 19.914 Atomic orbital electron populations 1.21504 0.79959 1.01875 1.02382 1.45852 1.07674 1.08858 1.77132 1.20871 0.90601 0.83430 0.75355 1.90736 1.70535 1.31227 1.48179 1.21700 0.91262 1.00767 1.04152 1.21465 0.93927 0.94109 1.04500 1.21593 0.94150 0.89701 0.96997 0.93485 1.21690 0.94991 0.99788 0.98545 1.21576 0.96085 0.96973 1.01220 1.21584 0.98949 0.95931 0.98885 1.22053 0.88151 1.00758 0.96552 1.62214 1.04514 1.14306 1.44623 1.22395 0.99450 0.97410 0.88673 1.22200 1.00318 0.99580 0.96034 1.19016 0.95365 0.95466 0.91456 1.21240 1.30847 1.10539 0.93075 0.93024 1.25021 0.95311 0.95076 0.99024 1.69966 1.33439 1.22459 1.27489 0.86642 0.78487 0.79674 0.83478 1.20729 1.21192 1.19974 0.90949 0.92427 0.92150 0.76655 0.88803 0.89039 0.90889 0.89721 0.91969 0.91315 0.92370 0.92303 0.92075 0.91439 0.91010 0.94455 0.90447 0.91327 0.93621 0.93313 0.96560 0.96704 0.93042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.79 10.70 59.84 0.64 1.43 16 2 N -0.74 -7.28 5.71 -67.08 -0.38 -7.67 16 3 C 0.51 6.88 7.83 -10.98 -0.09 6.80 16 4 O -0.53 -9.70 15.92 5.55 0.09 -9.61 16 5 C -0.14 -1.56 5.32 -27.88 -0.15 -1.71 16 6 C -0.10 -1.46 3.66 -26.73 -0.10 -1.55 16 7 C 0.08 1.15 1.30 -67.72 -0.09 1.07 16 8 H 0.05 0.71 6.57 -51.93 -0.34 0.37 16 9 C -0.11 -1.22 5.10 -26.65 -0.14 -1.36 16 10 C -0.12 -1.26 6.00 -26.60 -0.16 -1.42 16 11 C -0.12 -1.30 6.09 -26.65 -0.16 -1.46 16 12 C 0.05 0.74 5.06 -3.83 -0.02 0.72 16 13 N -0.53 -8.17 4.69 -226.69 -1.06 -9.24 16 14 C 0.05 0.87 4.79 -3.82 -0.02 0.85 16 15 C -0.14 -3.01 4.35 -26.73 -0.12 -3.12 16 16 C 0.02 0.66 4.97 -27.88 -0.14 0.52 16 17 C -0.52 -15.07 9.11 -34.44 -0.31 -15.39 16 18 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 19 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 20 N -0.89 -27.60 13.29 55.43 0.74 -26.87 16 21 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 22 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 25 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.40 2.54 8.83 -40.82 -0.36 2.18 16 29 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.09 0.76 6.83 -51.93 -0.35 0.41 16 31 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 32 H 0.08 1.50 5.70 -51.93 -0.30 1.21 16 33 H 0.06 0.56 6.72 -51.93 -0.35 0.21 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.07 1.00 8.06 -51.93 -0.42 0.58 16 40 H 0.04 0.57 6.80 -51.93 -0.35 0.21 16 41 H 0.08 1.47 6.24 -51.93 -0.32 1.15 16 42 H 0.07 1.25 8.05 -51.93 -0.42 0.83 16 43 H 0.05 0.96 6.76 -51.93 -0.35 0.61 16 44 H 0.05 1.02 6.22 -51.93 -0.32 0.70 16 45 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 360.76 15.07 5.44 5.44 Total: -1.00 -34.13 360.76 -9.65 -43.78 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -8.50 Total: 0.14 kcal Atomic # 6 Polarization: -12.12 SS G_CDS: -0.94 Total: -13.06 kcal Atomic # 7 Polarization: -43.06 SS G_CDS: -0.71 Total: -43.77 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: 0.09 Total: -9.61 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.13 -9.65 -43.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353175661.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.182 kcal (2) G-P(sol) polarization free energy of solvation -34.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds