Wall clock time and date at job start Tue Mar 31 2020 05:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46906 * 110.99648 * 2 1 4 4 C 1.46895 * 111.00160 * 123.94908 * 2 1 3 5 5 C 1.53001 * 109.47254 * 169.99909 * 4 2 1 6 6 N 1.46496 * 109.47712 * 185.22944 * 5 4 2 7 7 C 1.46498 * 119.99999 * 94.90250 * 6 5 4 8 8 C 1.52999 * 109.47052 * 84.34275 * 7 6 5 9 9 C 1.53003 * 109.47174 * 65.70042 * 8 7 6 10 10 C 1.52995 * 109.46989 * 180.02562 * 9 8 7 11 11 C 1.53003 * 109.46846 * 299.99704 * 10 9 8 12 12 C 1.52996 * 109.46960 * 60.00604 * 11 10 9 13 13 C 1.52992 * 109.47246 * 185.70223 * 8 7 6 14 14 C 1.34774 * 119.99821 * 274.91184 * 6 5 4 15 15 O 1.21692 * 120.00173 * 180.02562 * 14 6 5 16 16 C 1.46382 * 120.00145 * 359.97438 * 14 6 5 17 17 H 1.07997 * 119.99736 * 0.02562 * 16 14 6 18 18 C 1.40050 * 119.99782 * 180.02562 * 16 14 6 19 19 N 1.30667 * 120.00156 * 359.97438 * 18 16 14 20 20 Si 1.86796 * 119.99809 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47186 * 59.99547 * 20 18 16 22 22 H 1.48496 * 109.47268 * 180.02562 * 20 18 16 23 23 H 1.48510 * 109.46943 * 299.99937 * 20 18 16 24 24 H 1.09008 * 109.46851 * 296.04526 * 1 2 3 25 25 H 1.08997 * 109.47200 * 56.04496 * 1 2 3 26 26 H 1.08998 * 109.47008 * 176.05173 * 1 2 3 27 27 H 1.08996 * 109.47010 * 183.95664 * 3 2 1 28 28 H 1.08999 * 109.46779 * 303.95731 * 3 2 1 29 29 H 1.08997 * 109.46947 * 63.95177 * 3 2 1 30 30 H 1.09005 * 109.47036 * 50.00521 * 4 2 1 31 31 H 1.08996 * 109.47401 * 290.00191 * 4 2 1 32 32 H 1.09000 * 109.46663 * 65.22594 * 5 4 2 33 33 H 1.08997 * 109.47272 * 305.23265 * 5 4 2 34 34 H 1.08998 * 109.47487 * 324.33936 * 7 6 5 35 35 H 1.09000 * 109.46880 * 204.34109 * 7 6 5 36 36 H 1.08994 * 109.46890 * 305.70039 * 8 7 6 37 37 H 1.08999 * 109.46660 * 299.99850 * 9 8 7 38 38 H 1.08998 * 109.46741 * 60.00181 * 9 8 7 39 39 H 1.09005 * 109.47100 * 179.97438 * 10 9 8 40 40 H 1.08999 * 109.47554 * 59.99539 * 10 9 8 41 41 H 1.08994 * 109.47358 * 300.00120 * 11 10 9 42 42 H 1.09003 * 109.46868 * 180.02562 * 11 10 9 43 43 H 1.09005 * 109.47356 * 179.97438 * 12 11 10 44 44 H 1.08999 * 109.47616 * 60.00058 * 12 11 10 45 45 H 1.09006 * 109.47405 * 299.99852 * 13 8 7 46 46 H 1.08999 * 109.47613 * 59.99534 * 13 8 7 47 47 H 0.97002 * 119.99917 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7658 1.1376 5 6 3.5045 -0.9552 0.9703 6 7 4.0091 -1.8233 2.0371 7 6 4.1539 -3.2623 1.8036 8 6 5.4980 -3.5363 1.1260 9 6 6.6350 -3.1810 2.0862 10 6 7.9791 -3.4544 1.4083 11 6 8.0703 -4.9355 1.0357 12 6 6.9334 -5.2907 0.0755 13 6 5.5889 -5.0174 0.7538 14 6 4.3398 -1.2980 3.2334 15 8 4.7594 -2.0190 4.1195 16 6 4.1955 0.1399 3.4666 17 1 3.8235 0.7797 2.6801 18 6 4.5398 0.6857 4.7096 19 7 4.9893 -0.0887 5.6613 20 14 4.3549 2.5204 5.0074 21 1 2.9337 2.9108 4.8253 22 1 4.7839 2.8429 6.3920 23 1 5.2008 3.2664 4.0412 24 1 -0.3633 0.4513 0.9234 25 1 -0.3633 0.5740 -0.8524 26 1 -0.3633 -1.0252 -0.0708 27 1 3.0827 1.3434 -0.0709 28 1 1.5897 1.9164 -0.8524 29 1 1.7043 1.8724 0.9233 30 1 1.5091 -1.7406 1.1757 31 1 1.7976 -0.2246 2.0628 32 1 4.0005 0.0138 1.0253 33 1 3.7082 -1.4132 0.0025 34 1 3.3452 -3.6092 1.1603 35 1 4.1127 -3.7908 2.7560 36 1 5.5807 -2.9293 0.2245 37 1 6.5702 -2.1257 2.3513 38 1 6.5522 -3.7879 2.9877 39 1 8.7891 -3.2008 2.0922 40 1 8.0616 -2.8472 0.5069 41 1 7.9878 -5.5427 1.9370 42 1 9.0281 -5.1304 0.5531 43 1 6.9986 -6.3459 -0.1904 44 1 7.0159 -4.6836 -0.8259 45 1 5.5061 -5.6245 1.6553 46 1 4.7789 -5.2706 0.0698 47 1 5.2281 0.2895 6.5220 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355618536.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:05 Heat of formation + Delta-G solvation = -57.460935 kcal Electronic energy + Delta-G solvation = -23885.728714 eV Core-core repulsion = 20681.402906 eV Total energy + Delta-G solvation = -3204.325808 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -38.85611 -37.52280 -36.59673 -33.95488 -32.45235 -31.33891 -30.28362 -28.30016 -27.31022 -26.70498 -24.64391 -23.45554 -22.08984 -21.04594 -20.76136 -19.26595 -18.71251 -16.54658 -15.77637 -15.30302 -15.08100 -14.87143 -14.47937 -14.26749 -13.99957 -13.83060 -13.66515 -13.31782 -12.90247 -12.56508 -12.38114 -12.11159 -11.79235 -11.75892 -11.49967 -11.41328 -11.36346 -11.22558 -11.15918 -11.01835 -10.81704 -10.70934 -10.48626 -10.38009 -10.26131 -10.04414 -9.91862 -9.66758 -9.48827 -8.83985 -8.08320 -7.53908 -7.15007 -6.18063 -4.62520 3.12711 3.18757 3.19417 4.04181 4.19214 4.56929 4.76797 5.04957 5.14623 5.16595 5.37710 5.43433 5.58359 5.61887 5.65327 5.69463 5.74822 5.83533 5.88115 5.89653 5.93910 5.96690 5.97140 5.98417 6.08171 6.14876 6.23413 6.25111 6.29494 6.34900 6.43832 6.50658 6.53550 6.61008 6.66446 6.76620 6.82972 7.06959 7.21768 7.28091 7.31080 7.44749 7.72938 8.16867 8.40251 9.03498 9.47471 10.59925 10.79948 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.011731 B = 0.006624 C = 0.004654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2386.175352 B = 4226.042005 C = 6015.061438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.548 5.548 3 C 0.022 3.978 4 C 0.036 3.964 5 C 0.139 3.861 6 N -0.640 5.640 7 C 0.129 3.871 8 C -0.096 4.096 9 C -0.101 4.101 10 C -0.119 4.119 11 C -0.117 4.117 12 C -0.115 4.115 13 C -0.112 4.112 14 C 0.561 3.439 15 O -0.572 6.572 16 C -0.543 4.543 17 H 0.068 0.932 18 C 0.090 3.910 19 N -0.766 5.766 20 Si 0.899 3.101 21 H -0.270 1.270 22 H -0.280 1.280 23 H -0.268 1.268 24 H 0.023 0.977 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.073 0.927 28 H 0.060 0.940 29 H 0.027 0.973 30 H 0.065 0.935 31 H 0.048 0.952 32 H 0.073 0.927 33 H 0.058 0.942 34 H 0.047 0.953 35 H 0.074 0.926 36 H 0.060 0.940 37 H 0.072 0.928 38 H 0.061 0.939 39 H 0.054 0.946 40 H 0.053 0.947 41 H 0.059 0.941 42 H 0.052 0.948 43 H 0.053 0.947 44 H 0.057 0.943 45 H 0.060 0.940 46 H 0.055 0.945 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.730 -3.043 -11.289 11.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.272 5.272 3 C -0.127 4.127 4 C -0.093 4.093 5 C 0.014 3.986 6 N -0.377 5.377 7 C 0.005 3.995 8 C -0.116 4.116 9 C -0.139 4.139 10 C -0.157 4.157 11 C -0.155 4.155 12 C -0.152 4.152 13 C -0.150 4.150 14 C 0.366 3.634 15 O -0.454 6.454 16 C -0.579 4.579 17 H 0.086 0.914 18 C -0.130 4.130 19 N -0.395 5.395 20 Si 0.724 3.276 21 H -0.195 1.195 22 H -0.206 1.206 23 H -0.193 1.193 24 H 0.042 0.958 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.091 0.909 28 H 0.078 0.922 29 H 0.046 0.954 30 H 0.083 0.917 31 H 0.067 0.933 32 H 0.091 0.909 33 H 0.077 0.923 34 H 0.065 0.935 35 H 0.093 0.907 36 H 0.079 0.921 37 H 0.091 0.909 38 H 0.080 0.920 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.077 0.923 42 H 0.070 0.930 43 H 0.072 0.928 44 H 0.076 0.924 45 H 0.079 0.921 46 H 0.074 0.926 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.263 -3.695 -11.001 11.673 hybrid contribution -0.496 1.446 0.813 1.731 sum -1.760 -2.249 -10.188 10.580 Atomic orbital electron populations 1.22334 0.88147 1.01728 1.00017 1.62030 1.07234 1.13906 1.44041 1.22422 1.01344 0.88901 1.00011 1.22680 0.97603 0.97563 0.91429 1.21005 0.91601 0.95739 0.90300 1.48003 1.69974 1.05322 1.14414 1.21078 0.94199 0.84364 0.99858 1.21533 0.96774 0.94786 0.98556 1.21436 0.91957 1.03071 0.97404 1.21566 0.98606 0.95421 1.00070 1.21527 0.97547 0.97247 0.99183 1.21497 0.95273 1.00104 0.98369 1.21541 0.96441 0.96985 1.00041 1.18140 0.77160 0.88973 0.79113 1.90603 1.49908 1.62101 1.42755 1.20944 1.46578 0.91672 0.98755 0.91432 1.25679 0.92955 0.98713 0.95656 1.69999 1.30996 1.35606 1.02896 0.86573 0.79256 0.83850 0.77936 1.19457 1.20562 1.19270 0.95846 0.91924 0.91769 0.90850 0.92161 0.95411 0.91681 0.93323 0.90909 0.92347 0.93452 0.90740 0.92138 0.90900 0.92015 0.92678 0.92790 0.92261 0.92961 0.92778 0.92427 0.92139 0.92605 0.92174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.57 60.07 0.57 0.91 16 2 N -0.55 -8.24 5.02 -251.26 -1.26 -9.50 16 3 C 0.02 0.30 9.32 60.07 0.56 0.86 16 4 C 0.04 0.64 5.16 -3.83 -0.02 0.62 16 5 C 0.14 2.59 4.84 -4.04 -0.02 2.57 16 6 N -0.64 -13.95 2.29 -175.35 -0.40 -14.35 16 7 C 0.13 2.48 4.93 -4.04 -0.02 2.46 16 8 C -0.10 -1.64 2.39 -90.62 -0.22 -1.86 16 9 C -0.10 -1.94 4.23 -26.73 -0.11 -2.06 16 10 C -0.12 -1.88 5.92 -26.73 -0.16 -2.03 16 11 C -0.12 -1.57 5.92 -26.73 -0.16 -1.73 16 12 C -0.11 -1.45 5.92 -26.71 -0.16 -1.60 16 13 C -0.11 -1.57 5.21 -26.71 -0.14 -1.71 16 14 C 0.56 15.14 6.27 -12.99 -0.08 15.06 16 15 O -0.57 -17.49 13.51 5.20 0.07 -17.42 16 16 C -0.54 -14.71 8.33 -35.63 -0.30 -15.00 16 17 H 0.07 1.70 5.89 -52.49 -0.31 1.39 16 18 C 0.09 2.44 5.50 -17.37 -0.10 2.35 16 19 N -0.77 -22.47 11.83 55.55 0.66 -21.81 16 20 Si 0.90 19.91 29.56 -169.99 -5.02 14.89 16 21 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 22 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 23 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 24 H 0.02 0.30 8.14 -51.92 -0.42 -0.12 16 25 H 0.06 0.68 8.12 -51.93 -0.42 0.26 16 26 H 0.06 0.77 8.12 -51.93 -0.42 0.34 16 27 H 0.07 1.05 6.59 -51.93 -0.34 0.71 16 28 H 0.06 0.71 8.12 -51.93 -0.42 0.29 16 29 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 1.13 8.06 -51.93 -0.42 0.71 16 31 H 0.05 0.98 7.56 -51.93 -0.39 0.59 16 32 H 0.07 1.44 5.05 -51.93 -0.26 1.17 16 33 H 0.06 1.00 8.03 -51.93 -0.42 0.58 16 34 H 0.05 0.80 8.11 -51.93 -0.42 0.38 16 35 H 0.07 1.62 7.26 -51.93 -0.38 1.24 16 36 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.07 1.70 6.51 -51.93 -0.34 1.36 16 38 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 39 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 44 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 46 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.27 7.21 8.29 -40.82 -0.34 6.87 16 LS Contribution 360.46 15.07 5.43 5.43 Total: -1.00 -30.96 360.46 -9.62 -40.58 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -8.75 Total: 3.33 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: -0.34 Total: -1.16 kcal Atomic # 7 Polarization: -44.66 SS G_CDS: -1.00 Total: -45.66 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: 0.07 Total: -17.42 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.89 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.96 -9.62 -40.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355618536.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.877 kcal (2) G-P(sol) polarization free energy of solvation -30.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds