Wall clock time and date at job start Tue Mar 31 2020 05:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47561 * 2 1 4 4 C 1.36938 * 119.99957 * 272.15857 * 3 2 1 5 5 H 1.08006 * 119.99829 * 8.16123 * 4 3 2 6 6 C 1.38810 * 120.00262 * 188.15302 * 4 3 2 7 7 N 1.31622 * 119.99352 * 25.02374 * 6 4 3 8 8 Si 1.86795 * 120.00348 * 205.01786 * 6 4 3 9 9 H 1.48510 * 109.46783 * 90.00516 * 8 6 4 10 10 H 1.48498 * 109.47166 * 210.00020 * 8 6 4 11 11 H 1.48500 * 109.47261 * 330.00592 * 8 6 4 12 12 C 1.46502 * 120.00156 * 91.87887 * 3 2 1 13 13 C 1.50691 * 109.46914 * 90.00461 * 12 3 2 14 14 O 1.21283 * 120.00411 * 0.02562 * 13 12 3 15 15 N 1.34779 * 120.00122 * 180.02562 * 13 12 3 16 16 C 1.46500 * 119.99629 * 359.97438 * 15 13 12 17 17 C 1.46501 * 120.00273 * 180.02562 * 15 13 12 18 18 H 1.09002 * 109.46904 * 359.97438 * 17 15 13 19 19 C 1.52995 * 109.47049 * 239.99891 * 17 15 13 20 20 C 1.52998 * 109.47610 * 179.97438 * 19 17 15 21 21 C 1.53006 * 109.47145 * 59.99479 * 20 19 17 22 22 C 1.53002 * 109.47048 * 300.00538 * 21 20 19 23 23 C 1.52994 * 109.47350 * 119.99763 * 17 15 13 24 24 H 1.08994 * 109.47322 * 59.99705 * 23 17 15 25 25 C 1.53002 * 109.46905 * 299.99889 * 23 17 15 26 26 H 1.09005 * 109.46823 * 299.99815 * 1 2 3 27 27 H 1.08998 * 109.47460 * 59.99879 * 1 2 3 28 28 H 1.08995 * 109.47070 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46823 * 240.00185 * 2 1 3 30 30 H 1.08998 * 109.47460 * 120.00121 * 2 1 3 31 31 H 0.97007 * 119.99419 * 179.97438 * 7 6 4 32 32 H 1.09001 * 109.47026 * 210.00469 * 12 3 2 33 33 H 1.09000 * 109.46813 * 330.00237 * 12 3 2 34 34 H 1.09005 * 109.46813 * 90.00285 * 16 15 13 35 35 H 1.08999 * 109.46847 * 210.00087 * 16 15 13 36 36 H 1.08993 * 109.47248 * 330.00396 * 16 15 13 37 37 H 1.09004 * 109.47299 * 300.00200 * 19 17 15 38 38 H 1.08997 * 109.47376 * 59.99739 * 19 17 15 39 39 H 1.09000 * 109.46516 * 300.00242 * 20 19 17 40 40 H 1.08999 * 109.47860 * 179.97438 * 20 19 17 41 41 H 1.08992 * 109.46777 * 180.02562 * 21 20 19 42 42 H 1.08998 * 109.46723 * 59.99976 * 21 20 19 43 43 H 1.09002 * 109.47158 * 300.00021 * 22 21 20 44 44 H 1.08997 * 109.47132 * 179.97438 * 22 21 20 45 45 H 1.09003 * 109.47335 * 60.00139 * 25 23 17 46 46 H 1.08997 * 109.47132 * 180.02562 * 25 23 17 47 47 H 1.09004 * 109.47566 * 299.99562 * 25 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2046 2.0416 -1.1851 5 1 1.8691 1.5961 -2.1100 6 6 2.8243 3.2836 -1.1976 7 7 3.6508 3.6164 -0.2289 8 14 2.4853 4.4826 -2.5893 9 1 1.3271 5.3408 -2.2322 10 1 3.6817 5.3335 -2.8121 11 1 2.1774 3.7268 -3.8299 12 6 2.3019 2.0579 1.2680 13 6 3.7378 1.8166 1.6561 14 8 4.4541 1.1458 0.9435 15 7 4.2262 2.3462 2.7952 16 6 3.3611 3.1570 3.6558 17 6 5.6223 2.1121 3.1723 18 1 6.1040 1.4925 2.4158 19 6 5.6725 1.3971 4.5239 20 6 7.1306 1.1520 4.9175 21 6 7.8629 2.4914 5.0215 22 6 7.8127 3.2063 3.6697 23 6 6.3540 3.4517 3.2764 24 1 5.8723 4.0709 4.0330 25 6 6.3038 4.1666 1.9247 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 4.0842 4.4842 -0.2379 32 1 2.1311 3.1285 1.1546 33 1 1.6448 1.6654 2.0441 34 1 2.8655 2.5132 4.3825 35 1 3.9629 3.8999 4.1792 36 1 2.6114 3.6609 3.0459 37 1 5.1907 2.0163 5.2807 38 1 5.1513 0.4427 4.4498 39 1 7.6119 0.5326 4.1607 40 1 7.1664 0.6430 5.8807 41 1 8.9016 2.3166 5.3014 42 1 7.3815 3.1108 5.7782 43 1 8.2940 2.5868 2.9129 44 1 8.3340 4.1607 3.7439 45 1 5.2651 4.3409 1.6441 46 1 6.8255 5.1208 1.9987 47 1 6.7857 3.5474 1.1679 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355651399.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:47 Heat of formation + Delta-G solvation = -24.269612 kcal Electronic energy + Delta-G solvation = -24635.489750 eV Core-core repulsion = 21432.603226 eV Total energy + Delta-G solvation = -3202.886524 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.47750 -37.48590 -35.36156 -33.93935 -32.11868 -31.79960 -30.02927 -28.88729 -26.71393 -26.20113 -25.28797 -23.61154 -22.13735 -21.02506 -20.38501 -19.26151 -18.33023 -16.57346 -15.85997 -15.40810 -15.04183 -14.47027 -14.21289 -14.17799 -13.80951 -13.62613 -13.53975 -12.75153 -12.67088 -12.39859 -12.24363 -12.01385 -11.84015 -11.77034 -11.61535 -11.37764 -11.22648 -11.09665 -10.99190 -10.82319 -10.71703 -10.63158 -10.35571 -10.14586 -10.07782 -9.89801 -9.88238 -9.77297 -9.70904 -8.67622 -8.11298 -7.54204 -6.82915 -5.73900 -2.98327 3.43231 3.51180 3.51967 4.00156 4.34176 4.59898 4.88541 5.01487 5.09319 5.35129 5.40717 5.43843 5.51957 5.64794 5.68950 5.74440 5.78733 5.83201 5.91324 6.02089 6.03811 6.10631 6.16763 6.19811 6.23576 6.29142 6.33681 6.34351 6.37058 6.41384 6.47994 6.58376 6.62463 6.67874 6.73059 6.88067 6.91879 7.12588 7.18929 7.25487 7.63982 7.85537 8.33297 8.65874 9.24116 9.79038 9.96395 10.35538 11.35552 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018844 B = 0.006136 C = 0.005057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.559703 B = 4562.346086 C = 5535.282022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.147 3.853 3 N -0.577 5.577 4 C -0.241 4.241 5 H 0.075 0.925 6 C -0.002 4.002 7 N -0.893 5.893 8 Si 0.898 3.102 9 H -0.291 1.291 10 H -0.295 1.295 11 H -0.283 1.283 12 C 0.166 3.834 13 C 0.535 3.465 14 O -0.532 6.532 15 N -0.625 5.625 16 C 0.091 3.909 17 C 0.152 3.848 18 H 0.092 0.908 19 C -0.125 4.125 20 C -0.116 4.116 21 C -0.118 4.118 22 C -0.112 4.112 23 C -0.095 4.095 24 H 0.062 0.938 25 C -0.141 4.141 26 H 0.043 0.957 27 H 0.052 0.948 28 H 0.037 0.963 29 H 0.044 0.956 30 H 0.034 0.966 31 H 0.251 0.749 32 H 0.103 0.897 33 H 0.032 0.968 34 H 0.036 0.964 35 H 0.055 0.945 36 H 0.069 0.931 37 H 0.058 0.942 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.057 0.943 41 H 0.056 0.944 42 H 0.058 0.942 43 H 0.061 0.939 44 H 0.058 0.942 45 H 0.084 0.916 46 H 0.034 0.966 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.682 -0.629 12.283 12.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.020 3.980 3 N -0.297 5.297 4 C -0.370 4.370 5 H 0.093 0.907 6 C -0.199 4.199 7 N -0.539 5.539 8 Si 0.729 3.271 9 H -0.218 1.218 10 H -0.222 1.222 11 H -0.208 1.208 12 C 0.036 3.964 13 C 0.324 3.676 14 O -0.405 6.405 15 N -0.362 5.362 16 C -0.053 4.053 17 C 0.047 3.953 18 H 0.110 0.890 19 C -0.164 4.164 20 C -0.154 4.154 21 C -0.155 4.155 22 C -0.151 4.151 23 C -0.114 4.114 24 H 0.080 0.920 25 C -0.199 4.199 26 H 0.062 0.938 27 H 0.071 0.929 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.121 0.879 33 H 0.050 0.950 34 H 0.055 0.945 35 H 0.074 0.926 36 H 0.088 0.912 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.080 0.920 44 H 0.076 0.924 45 H 0.103 0.897 46 H 0.053 0.947 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.120 -0.885 11.810 12.247 hybrid contribution 0.076 0.917 -0.641 1.122 sum 3.195 0.032 11.168 11.616 Atomic orbital electron populations 1.22320 0.99640 0.99050 1.01412 1.20692 0.91755 0.86442 0.99107 1.43925 1.74203 1.09397 1.02142 1.19220 1.32541 0.98930 0.86297 0.90679 1.24638 0.97723 0.99422 0.98104 1.69952 1.28075 1.21185 1.34700 0.86324 0.77194 0.81611 0.81999 1.21828 1.22214 1.20835 1.20728 0.89396 0.99873 0.86432 1.22052 0.92037 0.76290 0.77236 1.90483 1.60234 1.40278 1.49526 1.48069 1.09855 1.54117 1.24191 1.21482 0.94754 0.94583 0.94524 1.20780 0.83692 0.95287 0.95524 0.88993 1.21888 0.96138 1.00585 0.97803 1.21490 0.95812 0.97189 1.00883 1.21539 0.99675 0.96624 0.97680 1.21599 0.96789 0.99957 0.96709 1.21422 0.94692 0.97065 0.98269 0.91978 1.21766 1.04348 0.98106 0.95637 0.93826 0.92890 0.94370 0.93740 0.94794 0.93833 0.87919 0.95023 0.94538 0.92648 0.91241 0.92292 0.92171 0.91994 0.92399 0.92507 0.92309 0.92019 0.92373 0.89712 0.94704 0.93079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.97 10.23 37.16 0.38 -2.59 16 2 C 0.15 3.17 6.39 -4.04 -0.03 3.15 16 3 N -0.58 -14.47 2.02 -174.61 -0.35 -14.83 16 4 C -0.24 -6.60 9.70 -15.06 -0.15 -6.75 16 5 H 0.08 2.06 7.95 -52.48 -0.42 1.64 16 6 C 0.00 -0.05 4.90 -17.43 -0.09 -0.13 16 7 N -0.89 -24.34 8.43 55.49 0.47 -23.88 16 8 Si 0.90 21.81 29.62 -169.99 -5.04 16.78 16 9 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 10 H -0.30 -7.36 7.11 56.52 0.40 -6.96 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 12 C 0.17 3.85 3.97 -5.20 -0.02 3.83 16 13 C 0.54 12.57 5.76 -10.99 -0.06 12.50 16 14 O -0.53 -14.86 15.51 5.55 0.09 -14.77 16 15 N -0.63 -11.85 2.00 -173.94 -0.35 -12.20 16 16 C 0.09 1.39 9.30 59.85 0.56 1.95 16 17 C 0.15 2.62 1.97 -67.94 -0.13 2.49 16 18 H 0.09 1.93 6.90 -51.93 -0.36 1.57 16 19 C -0.13 -1.76 5.20 -26.73 -0.14 -1.90 16 20 C -0.12 -1.39 5.92 -26.73 -0.16 -1.55 16 21 C -0.12 -1.33 5.92 -26.73 -0.16 -1.48 16 22 C -0.11 -1.48 5.21 -26.70 -0.14 -1.62 16 23 C -0.10 -1.47 2.09 -90.59 -0.19 -1.66 16 24 H 0.06 0.91 6.66 -51.93 -0.35 0.56 16 25 C -0.14 -2.59 9.04 37.16 0.34 -2.25 16 26 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 28 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.04 0.99 8.06 -51.93 -0.42 0.57 16 30 H 0.03 0.71 8.06 -51.93 -0.42 0.29 16 31 H 0.25 6.77 7.82 -40.82 -0.32 6.45 16 32 H 0.10 2.53 5.53 -51.93 -0.29 2.24 16 33 H 0.03 0.65 8.04 -51.93 -0.42 0.23 16 34 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.05 0.75 6.42 -51.93 -0.33 0.42 16 36 H 0.07 1.11 6.44 -51.93 -0.33 0.78 16 37 H 0.06 0.76 7.67 -51.93 -0.40 0.36 16 38 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 44 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 45 H 0.08 1.79 6.50 -51.93 -0.34 1.45 16 46 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 356.38 15.07 5.37 5.37 Total: -1.00 -30.55 356.38 -8.47 -39.02 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -8.68 Total: 0.52 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: 0.01 Total: 3.98 kcal Atomic # 7 Polarization: -50.67 SS G_CDS: -0.23 Total: -50.90 kcal Atomic # 8 Polarization: -14.86 SS G_CDS: 0.09 Total: -14.77 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.04 Total: 16.78 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.55 -8.47 -39.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355651399.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.753 kcal (2) G-P(sol) polarization free energy of solvation -30.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds