Wall clock time and date at job start Tue Mar 31 2020 05:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47561 * 2 1 4 4 C 1.36938 * 119.99957 * 272.15857 * 3 2 1 5 5 H 1.08006 * 119.99829 * 8.16123 * 4 3 2 6 6 C 1.38810 * 120.00262 * 188.15302 * 4 3 2 7 7 N 1.31622 * 119.99352 * 25.02374 * 6 4 3 8 8 Si 1.86795 * 120.00348 * 205.01786 * 6 4 3 9 9 H 1.48510 * 109.46783 * 90.00516 * 8 6 4 10 10 H 1.48498 * 109.47166 * 210.00020 * 8 6 4 11 11 H 1.48500 * 109.47261 * 330.00592 * 8 6 4 12 12 C 1.46502 * 120.00156 * 91.87887 * 3 2 1 13 13 C 1.50691 * 109.46914 * 90.00461 * 12 3 2 14 14 O 1.21283 * 120.00411 * 0.02562 * 13 12 3 15 15 N 1.34779 * 120.00122 * 180.02562 * 13 12 3 16 16 C 1.46500 * 119.99629 * 359.97438 * 15 13 12 17 17 C 1.46501 * 120.00273 * 180.02562 * 15 13 12 18 18 H 1.09002 * 109.46904 * 359.97438 * 17 15 13 19 19 C 1.52995 * 109.47049 * 239.99891 * 17 15 13 20 20 C 1.52998 * 109.47610 * 179.97438 * 19 17 15 21 21 C 1.53006 * 109.47145 * 59.99479 * 20 19 17 22 22 C 1.53002 * 109.47048 * 300.00538 * 21 20 19 23 23 C 1.52994 * 109.47350 * 119.99763 * 17 15 13 24 24 H 1.08994 * 109.47322 * 59.99705 * 23 17 15 25 25 C 1.53002 * 109.46905 * 299.99889 * 23 17 15 26 26 H 1.09005 * 109.46823 * 299.99815 * 1 2 3 27 27 H 1.08998 * 109.47460 * 59.99879 * 1 2 3 28 28 H 1.08995 * 109.47070 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46823 * 240.00185 * 2 1 3 30 30 H 1.08998 * 109.47460 * 120.00121 * 2 1 3 31 31 H 0.97007 * 119.99419 * 179.97438 * 7 6 4 32 32 H 1.09001 * 109.47026 * 210.00469 * 12 3 2 33 33 H 1.09000 * 109.46813 * 330.00237 * 12 3 2 34 34 H 1.09005 * 109.46813 * 90.00285 * 16 15 13 35 35 H 1.08999 * 109.46847 * 210.00087 * 16 15 13 36 36 H 1.08993 * 109.47248 * 330.00396 * 16 15 13 37 37 H 1.09004 * 109.47299 * 300.00200 * 19 17 15 38 38 H 1.08997 * 109.47376 * 59.99739 * 19 17 15 39 39 H 1.09000 * 109.46516 * 300.00242 * 20 19 17 40 40 H 1.08999 * 109.47860 * 179.97438 * 20 19 17 41 41 H 1.08992 * 109.46777 * 180.02562 * 21 20 19 42 42 H 1.08998 * 109.46723 * 59.99976 * 21 20 19 43 43 H 1.09002 * 109.47158 * 300.00021 * 22 21 20 44 44 H 1.08997 * 109.47132 * 179.97438 * 22 21 20 45 45 H 1.09003 * 109.47335 * 60.00139 * 25 23 17 46 46 H 1.08997 * 109.47132 * 180.02562 * 25 23 17 47 47 H 1.09004 * 109.47566 * 299.99562 * 25 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2046 2.0416 -1.1851 5 1 1.8691 1.5961 -2.1100 6 6 2.8243 3.2836 -1.1976 7 7 3.6508 3.6164 -0.2289 8 14 2.4853 4.4826 -2.5893 9 1 1.3271 5.3408 -2.2322 10 1 3.6817 5.3335 -2.8121 11 1 2.1774 3.7268 -3.8299 12 6 2.3019 2.0579 1.2680 13 6 3.7378 1.8166 1.6561 14 8 4.4541 1.1458 0.9435 15 7 4.2262 2.3462 2.7952 16 6 3.3611 3.1570 3.6558 17 6 5.6223 2.1121 3.1723 18 1 6.1040 1.4925 2.4158 19 6 5.6725 1.3971 4.5239 20 6 7.1306 1.1520 4.9175 21 6 7.8629 2.4914 5.0215 22 6 7.8127 3.2063 3.6697 23 6 6.3540 3.4517 3.2764 24 1 5.8723 4.0709 4.0330 25 6 6.3038 4.1666 1.9247 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 4.0842 4.4842 -0.2379 32 1 2.1311 3.1285 1.1546 33 1 1.6448 1.6654 2.0441 34 1 2.8655 2.5132 4.3825 35 1 3.9629 3.8999 4.1792 36 1 2.6114 3.6609 3.0459 37 1 5.1907 2.0163 5.2807 38 1 5.1513 0.4427 4.4498 39 1 7.6119 0.5326 4.1607 40 1 7.1664 0.6430 5.8807 41 1 8.9016 2.3166 5.3014 42 1 7.3815 3.1108 5.7782 43 1 8.2940 2.5868 2.9129 44 1 8.3340 4.1607 3.7439 45 1 5.2651 4.3409 1.6441 46 1 6.8255 5.1208 1.9987 47 1 6.7857 3.5474 1.1679 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355651399.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:46 Heat of formation + Delta-G solvation = -40.245465 kcal Electronic energy + Delta-G solvation = -24636.182515 eV Core-core repulsion = 21432.603226 eV Total energy + Delta-G solvation = -3203.579289 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.94191 -39.05160 -37.14209 -35.51356 -33.75679 -33.33876 -31.44558 -30.48345 -28.47025 -27.58656 -26.71063 -25.42576 -23.42381 -22.37280 -21.91698 -20.55420 -19.96845 -18.49861 -17.53726 -16.96782 -16.82733 -16.02674 -15.64889 -15.45762 -15.32632 -15.21866 -14.86390 -14.32421 -14.16459 -13.85971 -13.74256 -13.53734 -13.28330 -13.20301 -13.11248 -12.94123 -12.77953 -12.69897 -12.54443 -12.36605 -12.22571 -12.00454 -11.97570 -11.73516 -11.69969 -11.58765 -11.30421 -11.12225 -11.06045 -10.64231 -10.06952 -9.08267 -8.78129 -7.79777 -5.05907 1.47562 1.49396 1.56592 2.44108 2.51665 2.71152 3.32997 3.69258 3.72431 3.90842 4.03338 4.22555 4.29884 4.37780 4.39397 4.49571 4.59003 4.61241 4.62210 4.64719 4.67158 4.79618 4.81876 4.88012 4.90812 4.98567 5.03059 5.06069 5.06686 5.12878 5.24729 5.26038 5.28337 5.31598 5.34337 5.37649 5.46376 5.56898 5.60086 5.64714 5.75244 6.16334 6.34236 6.97039 7.22529 7.87514 8.12086 8.34265 9.25841 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018844 B = 0.006136 C = 0.005057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.559703 B = 4562.346086 C = 5535.282022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.142 3.858 3 N -0.594 5.594 4 C -0.258 4.258 5 H 0.066 0.934 6 C -0.045 4.045 7 N -0.900 5.900 8 Si 0.956 3.044 9 H -0.282 1.282 10 H -0.305 1.305 11 H -0.282 1.282 12 C 0.170 3.830 13 C 0.534 3.466 14 O -0.590 6.590 15 N -0.622 5.622 16 C 0.086 3.914 17 C 0.150 3.850 18 H 0.043 0.957 19 C -0.116 4.116 20 C -0.114 4.114 21 C -0.111 4.111 22 C -0.110 4.110 23 C -0.087 4.087 24 H 0.085 0.915 25 C -0.133 4.133 26 H 0.051 0.949 27 H 0.041 0.959 28 H 0.069 0.931 29 H 0.028 0.972 30 H 0.036 0.964 31 H 0.244 0.756 32 H 0.086 0.914 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.079 0.921 36 H 0.059 0.941 37 H 0.082 0.918 38 H 0.046 0.954 39 H 0.045 0.955 40 H 0.083 0.917 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.042 0.958 44 H 0.075 0.925 45 H 0.055 0.945 46 H 0.055 0.945 47 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.373 0.112 15.089 15.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.017 3.983 3 N -0.315 5.315 4 C -0.387 4.387 5 H 0.083 0.917 6 C -0.241 4.241 7 N -0.547 5.547 8 Si 0.787 3.213 9 H -0.209 1.209 10 H -0.232 1.232 11 H -0.208 1.208 12 C 0.040 3.960 13 C 0.323 3.677 14 O -0.468 6.468 15 N -0.357 5.357 16 C -0.057 4.057 17 C 0.046 3.954 18 H 0.062 0.938 19 C -0.155 4.155 20 C -0.152 4.152 21 C -0.148 4.148 22 C -0.148 4.148 23 C -0.106 4.106 24 H 0.103 0.897 25 C -0.191 4.191 26 H 0.070 0.930 27 H 0.060 0.940 28 H 0.088 0.912 29 H 0.046 0.954 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.104 0.896 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.098 0.902 36 H 0.078 0.922 37 H 0.101 0.899 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.102 0.898 41 H 0.094 0.906 42 H 0.096 0.904 43 H 0.061 0.939 44 H 0.093 0.907 45 H 0.074 0.926 46 H 0.074 0.926 47 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges 2.789 -0.134 14.671 14.935 hybrid contribution 0.201 0.661 -1.506 1.657 sum 2.989 0.526 13.165 13.511 Atomic orbital electron populations 1.22114 0.96341 1.01064 1.01215 1.20841 0.94148 0.84910 0.98446 1.44157 1.74671 1.10607 1.02076 1.19347 1.32703 0.99640 0.87055 0.91655 1.25268 0.97830 1.00554 1.00438 1.70114 1.28142 1.20724 1.35697 0.85427 0.76547 0.79556 0.79807 1.20932 1.23215 1.20783 1.20687 0.89907 0.98899 0.86545 1.22022 0.91918 0.75853 0.77857 1.90452 1.61466 1.43072 1.51859 1.48006 1.11041 1.53288 1.23365 1.21715 0.94539 0.95149 0.94298 1.20862 0.82415 0.96061 0.96049 0.93830 1.21807 0.97931 0.99788 0.95927 1.21503 0.94135 0.97957 1.01614 1.21515 1.01014 0.95813 0.96447 1.21582 0.94714 1.00870 0.97650 1.21383 0.96536 0.95748 0.96952 0.89724 1.21661 1.02150 0.98797 0.96486 0.93012 0.93998 0.91206 0.95378 0.94534 0.94546 0.89569 0.92287 0.91686 0.90236 0.92225 0.89938 0.93466 0.93580 0.89819 0.90559 0.90444 0.93930 0.90686 0.92597 0.92619 0.96802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.15 10.23 71.98 0.74 -4.41 16 2 C 0.14 6.21 6.39 86.38 0.55 6.77 16 3 N -0.59 -30.50 2.02 -706.35 -1.43 -31.92 16 4 C -0.26 -14.54 9.70 84.03 0.82 -13.72 16 5 H 0.07 3.71 7.95 -2.91 -0.02 3.69 16 6 C -0.05 -2.52 4.90 84.86 0.42 -2.10 16 7 N -0.90 -50.77 8.43 21.65 0.18 -50.59 16 8 Si 0.96 45.96 29.62 68.60 2.03 47.99 16 9 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 10 H -0.30 -15.00 7.11 99.48 0.71 -14.30 16 11 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 12 C 0.17 7.97 3.97 85.63 0.34 8.31 16 13 C 0.53 25.83 5.76 87.65 0.50 26.33 16 14 O -0.59 -34.76 15.51 -3.04 -0.05 -34.81 16 15 N -0.62 -23.57 2.00 -822.62 -1.64 -25.22 16 16 C 0.09 2.44 9.30 127.77 1.19 3.63 16 17 C 0.15 5.20 1.97 44.99 0.09 5.29 16 18 H 0.04 1.94 6.90 -2.39 -0.02 1.92 16 19 C -0.12 -3.02 5.20 30.59 0.16 -2.86 16 20 C -0.11 -2.45 5.92 30.60 0.18 -2.27 16 21 C -0.11 -2.08 5.92 30.60 0.18 -1.90 16 22 C -0.11 -2.69 5.21 30.61 0.16 -2.53 16 23 C -0.09 -2.59 2.09 -10.78 -0.02 -2.61 16 24 H 0.08 2.18 6.66 -2.39 -0.02 2.16 16 25 C -0.13 -4.98 9.04 71.98 0.65 -4.33 16 26 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 27 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.03 1.28 8.06 -2.38 -0.02 1.26 16 30 H 0.04 1.54 8.06 -2.39 -0.02 1.52 16 31 H 0.24 13.66 7.82 -92.70 -0.72 12.94 16 32 H 0.09 4.33 5.53 -2.39 -0.01 4.32 16 33 H 0.06 2.38 8.04 -2.39 -0.02 2.36 16 34 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 35 H 0.08 1.89 6.42 -2.39 -0.02 1.87 16 36 H 0.06 1.84 6.44 -2.39 -0.02 1.83 16 37 H 0.08 1.78 7.67 -2.39 -0.02 1.77 16 38 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.04 1.19 8.14 -2.39 -0.02 1.18 16 44 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 45 H 0.05 2.41 6.50 -2.39 -0.02 2.40 16 46 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 47 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 Total: -1.00 -70.37 356.38 6.00 -64.37 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: 0.95 Total: 16.59 kcal Atomic # 6 Polarization: 7.63 SS G_CDS: 5.95 Total: 13.58 kcal Atomic # 7 Polarization: -104.84 SS G_CDS: -2.89 Total: -107.73 kcal Atomic # 8 Polarization: -34.76 SS G_CDS: -0.05 Total: -34.81 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Total: -70.37 6.00 -64.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355651399.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.128 kcal (2) G-P(sol) polarization free energy of solvation -70.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds