Wall clock time and date at job start Tue Mar 31 2020 05:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46503 * 109.46728 * 2 1 4 4 C 1.36938 * 119.99208 * 85.10538 * 3 2 1 5 5 H 1.08002 * 120.00586 * 338.84476 * 4 3 2 6 6 C 1.38813 * 119.99713 * 158.57705 * 4 3 2 7 7 N 1.31620 * 119.99918 * 354.43145 * 6 4 3 8 8 Si 1.86801 * 120.00121 * 174.43082 * 6 4 3 9 9 H 1.48507 * 109.46884 * 359.97438 * 8 6 4 10 10 H 1.48489 * 109.47316 * 119.99746 * 8 6 4 11 11 H 1.48496 * 109.46927 * 240.00051 * 8 6 4 12 12 C 1.46492 * 120.00245 * 265.09950 * 3 2 1 13 13 C 1.50709 * 109.46935 * 275.86694 * 12 3 2 14 14 O 1.21272 * 120.00175 * 5.74181 * 13 12 3 15 15 N 1.34776 * 119.99552 * 185.74233 * 13 12 3 16 16 C 1.46495 * 120.00303 * 2.26130 * 15 13 12 17 17 C 1.46498 * 119.99572 * 182.26833 * 15 13 12 18 18 H 1.09003 * 109.47383 * 49.63606 * 17 15 13 19 19 C 1.53003 * 109.47375 * 169.63405 * 17 15 13 20 20 C 1.52995 * 109.47009 * 59.99615 * 19 17 15 21 21 C 1.53001 * 109.47356 * 60.00344 * 20 19 17 22 22 C 1.53004 * 109.46939 * 300.00149 * 21 20 19 23 23 C 1.52993 * 109.47299 * 289.63349 * 17 15 13 24 24 H 1.08996 * 109.47672 * 180.02562 * 23 17 15 25 25 C 1.52998 * 109.47310 * 59.99992 * 23 17 15 26 26 H 1.09003 * 109.47333 * 299.99481 * 1 2 3 27 27 H 1.09000 * 109.47392 * 59.99615 * 1 2 3 28 28 H 1.09005 * 109.47277 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46950 * 240.00821 * 2 1 3 30 30 H 1.08993 * 109.47537 * 120.00756 * 2 1 3 31 31 H 0.97003 * 120.00156 * 180.02562 * 7 6 4 32 32 H 1.08997 * 109.47274 * 35.86999 * 12 3 2 33 33 H 1.08999 * 109.46942 * 155.86996 * 12 3 2 34 34 H 1.09005 * 109.46846 * 92.26977 * 16 15 13 35 35 H 1.09006 * 109.47481 * 212.26992 * 16 15 13 36 36 H 1.08998 * 109.47403 * 332.27080 * 16 15 13 37 37 H 1.09000 * 109.47805 * 179.97438 * 19 17 15 38 38 H 1.09003 * 109.47292 * 299.99890 * 19 17 15 39 39 H 1.09005 * 109.47681 * 300.00484 * 20 19 17 40 40 H 1.09001 * 109.47689 * 180.02562 * 20 19 17 41 41 H 1.09003 * 109.47648 * 180.02562 * 21 20 19 42 42 H 1.09002 * 109.47072 * 59.99299 * 21 20 19 43 43 H 1.08996 * 109.47056 * 299.99964 * 22 21 20 44 44 H 1.08996 * 109.47135 * 179.97438 * 22 21 20 45 45 H 1.09004 * 109.47146 * 51.08897 * 25 23 17 46 46 H 1.08996 * 109.47733 * 171.09395 * 25 23 17 47 47 H 1.08999 * 109.47267 * 291.09526 * 25 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1510 2.0604 1.1817 5 1 1.5994 1.7405 2.0534 6 6 2.9988 3.1567 1.2606 7 7 3.7571 3.4775 0.2338 8 14 3.0633 4.1769 2.8242 9 1 2.1204 3.6121 3.8229 10 1 4.4420 4.1519 3.3750 11 1 2.6781 5.5778 2.5174 12 6 2.3646 2.0358 -1.2640 13 6 3.7750 1.6702 -1.6490 14 8 4.3902 0.8551 -0.9950 15 7 4.3526 2.2493 -2.7202 16 6 3.6278 3.2702 -3.4809 17 6 5.7053 1.8577 -3.1240 18 1 5.7671 0.7709 -3.1815 19 6 6.0230 2.4597 -4.4943 20 6 5.9363 3.9851 -4.4137 21 6 6.9447 4.4996 -3.3845 22 6 6.6271 3.8975 -2.0142 23 6 6.7138 2.3721 -2.0949 24 1 7.7203 2.0811 -2.3955 25 6 6.3963 1.7701 -0.7246 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5137 -0.8901 30 1 1.8934 -0.5139 0.8898 31 1 4.3499 4.2434 0.2891 32 1 1.6780 1.7063 -2.0438 33 1 2.2887 3.1167 -1.1461 34 1 3.8721 4.2573 -3.0884 35 1 3.9167 3.2147 -4.5305 36 1 2.5554 3.0981 -3.3897 37 1 7.0296 2.1688 -4.7946 38 1 5.3046 2.0932 -5.2276 39 1 4.9298 4.2765 -4.1132 40 1 6.1621 4.4141 -5.3899 41 1 6.8827 5.5863 -3.3266 42 1 7.9512 4.2082 -3.6848 43 1 5.6207 4.1888 -1.7138 44 1 7.3458 4.2637 -1.2810 45 1 6.3021 0.6880 -0.8161 46 1 7.2006 2.0072 -0.0283 47 1 5.4598 2.1861 -0.3532 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355651400.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:50 Heat of formation + Delta-G solvation = 26.647357 kcal Electronic energy + Delta-G solvation = -25501.603419 eV Core-core repulsion = 22300.924820 eV Total energy + Delta-G solvation = -3200.678599 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.06643 -37.27455 -35.24670 -33.73130 -32.03115 -31.79387 -30.05796 -28.93165 -26.75125 -26.47493 -24.73681 -23.57522 -21.80548 -20.90446 -20.59331 -19.32823 -17.84267 -16.65375 -15.88420 -15.58963 -15.07406 -14.63392 -14.08234 -14.01992 -13.72250 -13.50194 -13.15921 -12.91971 -12.59965 -12.35754 -12.25611 -11.82232 -11.67218 -11.55894 -11.49236 -11.30666 -11.13290 -10.94826 -10.80304 -10.66993 -10.60026 -10.31888 -10.20425 -9.90034 -9.80216 -9.73416 -9.65556 -9.37938 -9.17772 -8.68854 -7.97319 -7.32748 -6.66909 -5.75151 -3.15032 3.39570 3.48057 3.48799 4.02959 4.34962 4.55397 5.09800 5.13606 5.18176 5.45118 5.51402 5.61119 5.63773 5.75850 5.83937 5.89724 5.96894 5.98219 6.02666 6.05698 6.12144 6.25286 6.28129 6.32067 6.37745 6.39564 6.41514 6.51272 6.66028 6.66601 6.70065 6.78484 6.86548 6.91748 7.04502 7.10742 7.20252 7.30690 7.35060 7.69930 7.78074 8.17296 8.40760 8.67498 9.24951 9.78258 9.92186 10.34521 11.32056 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017240 B = 0.007641 C = 0.006233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.774595 B = 3663.589049 C = 4490.784680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.147 3.853 3 N -0.576 5.576 4 C -0.233 4.233 5 H 0.072 0.928 6 C -0.001 4.001 7 N -0.906 5.906 8 Si 0.908 3.092 9 H -0.282 1.282 10 H -0.292 1.292 11 H -0.292 1.292 12 C 0.165 3.835 13 C 0.527 3.473 14 O -0.527 6.527 15 N -0.618 5.618 16 C 0.086 3.914 17 C 0.160 3.840 18 H 0.061 0.939 19 C -0.121 4.121 20 C -0.161 4.161 21 C -0.114 4.114 22 C -0.112 4.112 23 C -0.088 4.088 24 H 0.045 0.955 25 C -0.160 4.160 26 H 0.050 0.950 27 H 0.042 0.958 28 H 0.037 0.963 29 H 0.036 0.964 30 H 0.042 0.958 31 H 0.253 0.747 32 H 0.024 0.976 33 H 0.113 0.887 34 H 0.054 0.946 35 H 0.064 0.936 36 H 0.059 0.941 37 H 0.064 0.936 38 H 0.061 0.939 39 H 0.106 0.894 40 H 0.050 0.950 41 H 0.052 0.948 42 H 0.047 0.953 43 H 0.086 0.914 44 H 0.045 0.955 45 H 0.055 0.945 46 H 0.002 0.998 47 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.245 0.926 -10.432 10.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.020 3.980 3 N -0.296 5.296 4 C -0.363 4.363 5 H 0.089 0.911 6 C -0.196 4.196 7 N -0.555 5.555 8 Si 0.740 3.260 9 H -0.207 1.207 10 H -0.219 1.219 11 H -0.219 1.219 12 C 0.035 3.965 13 C 0.316 3.684 14 O -0.403 6.403 15 N -0.356 5.356 16 C -0.058 4.058 17 C 0.056 3.944 18 H 0.079 0.921 19 C -0.159 4.159 20 C -0.197 4.197 21 C -0.152 4.152 22 C -0.150 4.150 23 C -0.108 4.108 24 H 0.064 0.936 25 C -0.216 4.216 26 H 0.069 0.931 27 H 0.061 0.939 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.042 0.958 33 H 0.130 0.870 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.123 0.877 40 H 0.068 0.932 41 H 0.071 0.929 42 H 0.066 0.934 43 H 0.104 0.896 44 H 0.064 0.936 45 H 0.074 0.926 46 H 0.021 0.979 47 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 1.646 0.585 -10.017 10.168 hybrid contribution 0.635 0.724 0.777 1.237 sum 2.281 1.309 -9.240 9.607 Atomic orbital electron populations 1.22322 0.99907 0.98987 1.01228 1.20705 0.91393 0.86726 0.99179 1.43740 1.74436 1.08832 1.02611 1.19312 1.19141 1.08347 0.89465 0.91067 1.24858 0.96846 1.00404 0.97538 1.69582 1.27605 1.28906 1.29376 0.86104 0.77215 0.79726 0.82975 1.20699 1.21943 1.21932 1.20703 0.88836 1.00753 0.86171 1.21866 0.90629 0.79462 0.76437 1.90586 1.63624 1.35545 1.50499 1.47913 1.14689 1.41706 1.31254 1.21945 0.96304 0.92037 0.95480 1.20791 0.83599 0.97642 0.92369 0.92058 1.21738 1.01163 0.96246 0.96765 1.22555 1.03459 0.95235 0.98476 1.21503 0.98241 0.99203 0.96249 1.21571 1.03169 0.95190 0.95052 1.21427 0.96632 0.95377 0.97368 0.93612 1.22788 1.03917 1.01393 0.93539 0.93108 0.93880 0.94444 0.94527 0.93948 0.93628 0.95804 0.86970 0.92770 0.91765 0.92229 0.91732 0.92030 0.87662 0.93162 0.92931 0.93386 0.89555 0.93603 0.92613 0.97887 0.84503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.97 10.21 37.16 0.38 -2.60 16 2 C 0.15 3.15 6.26 -4.04 -0.03 3.12 16 3 N -0.58 -14.03 2.07 -174.61 -0.36 -14.40 16 4 C -0.23 -6.17 9.70 -15.06 -0.15 -6.31 16 5 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 6 C 0.00 -0.02 5.21 -17.43 -0.09 -0.11 16 7 N -0.91 -23.36 7.03 55.49 0.39 -22.97 16 8 Si 0.91 21.55 29.56 -169.99 -5.02 16.52 16 9 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 C 0.17 3.72 3.77 -5.19 -0.02 3.70 16 13 C 0.53 11.79 4.72 -10.98 -0.05 11.73 16 14 O -0.53 -13.59 11.16 5.56 0.06 -13.52 16 15 N -0.62 -11.38 2.24 -178.07 -0.40 -11.78 16 16 C 0.09 1.28 7.81 59.84 0.47 1.75 16 17 C 0.16 2.77 2.59 -67.93 -0.18 2.60 16 18 H 0.06 1.15 8.06 -51.93 -0.42 0.73 16 19 C -0.12 -1.63 4.95 -26.73 -0.13 -1.76 16 20 C -0.16 -2.05 5.13 -26.73 -0.14 -2.19 16 21 C -0.11 -1.61 5.92 -26.73 -0.16 -1.77 16 22 C -0.11 -1.97 5.03 -26.73 -0.13 -2.11 16 23 C -0.09 -1.65 2.54 -90.62 -0.23 -1.88 16 24 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 25 C -0.16 -3.66 7.28 37.16 0.27 -3.39 16 26 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.04 0.77 8.03 -51.93 -0.42 0.35 16 30 H 0.04 0.95 8.08 -51.93 -0.42 0.53 16 31 H 0.25 6.53 8.21 -40.82 -0.34 6.20 16 32 H 0.02 0.49 7.74 -51.93 -0.40 0.09 16 33 H 0.11 2.69 5.93 -51.93 -0.31 2.38 16 34 H 0.05 0.84 6.23 -51.93 -0.32 0.52 16 35 H 0.06 0.79 4.89 -51.93 -0.25 0.54 16 36 H 0.06 0.86 6.49 -51.93 -0.34 0.53 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.06 0.75 7.35 -51.93 -0.38 0.37 16 39 H 0.11 1.38 2.97 -57.07 -0.17 1.21 16 40 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.09 1.72 6.74 -51.93 -0.35 1.37 16 44 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.06 1.35 6.63 -51.93 -0.34 1.01 16 46 H 0.00 0.05 8.14 -51.93 -0.42 -0.37 16 47 H 0.14 3.50 3.39 -51.93 -0.18 3.32 16 LS Contribution 334.53 15.07 5.04 5.04 Total: -1.00 -28.28 334.53 -8.55 -36.83 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -8.07 Total: 3.48 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: -0.18 Total: 0.79 kcal Atomic # 7 Polarization: -48.77 SS G_CDS: -0.37 Total: -49.14 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: 0.06 Total: -13.52 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -28.28 -8.55 -36.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355651400.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.478 kcal (2) G-P(sol) polarization free energy of solvation -28.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds